Wall clock time and date at job start Tue Mar 31 2020 06:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47014 * 2 1 4 4 C 1.52989 * 109.47387 * 120.00465 * 2 1 3 5 5 S 1.81394 * 109.47336 * 65.00115 * 4 2 1 6 6 C 1.81401 * 103.00539 * 180.02562 * 5 4 2 7 7 C 1.50695 * 109.47712 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99875 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00428 * 180.02562 * 7 6 5 10 10 C 1.39236 * 120.00141 * 184.29419 * 9 7 6 11 11 C 1.39480 * 119.83106 * 324.70365 * 10 9 7 12 12 C 1.36375 * 120.16649 * 180.30100 * 11 10 9 13 13 C 1.40868 * 119.82898 * 359.48341 * 12 11 10 14 14 C 1.41155 * 120.16304 * 180.25634 * 13 12 11 15 15 H 1.08007 * 119.99709 * 215.01619 * 14 13 12 16 16 C 1.39906 * 120.00720 * 35.00344 * 14 13 12 17 17 N 1.30873 * 119.99293 * 355.55656 * 16 14 13 18 18 Si 1.86797 * 120.00240 * 175.54751 * 16 14 13 19 19 H 1.48494 * 109.47220 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46828 * 120.00790 * 18 16 14 21 21 H 1.48499 * 109.47027 * 240.00626 * 18 16 14 22 22 C 1.40869 * 119.67371 * 0.51350 * 13 12 11 23 23 C 1.36379 * 119.82277 * 359.73907 * 22 13 12 24 24 H 1.08997 * 109.47087 * 299.99415 * 1 2 3 25 25 H 1.09003 * 109.47336 * 59.99948 * 1 2 3 26 26 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47418 * 240.00651 * 2 1 3 28 28 H 1.08997 * 109.47281 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47573 * 300.00237 * 3 2 1 30 30 H 1.09011 * 109.46751 * 60.00419 * 3 2 1 31 31 H 1.09008 * 109.47131 * 305.00081 * 4 2 1 32 32 H 1.08998 * 109.47459 * 185.00248 * 4 2 1 33 33 H 1.08997 * 109.46872 * 59.99368 * 6 5 4 34 34 H 1.09001 * 109.46808 * 300.00599 * 6 5 4 35 35 H 0.97003 * 119.99834 * 4.28293 * 9 7 6 36 36 H 1.08000 * 119.91840 * 0.02701 * 11 10 9 37 37 H 1.08003 * 120.08232 * 179.70255 * 12 11 10 38 38 H 0.97006 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.08862 * 179.71587 * 22 13 12 40 40 H 1.08000 * 119.90940 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 1.5602 -2.4691 1.1763 6 6 2.2419 -3.1440 2.7160 7 6 1.9223 -4.6139 2.8052 8 8 1.2958 -5.1532 1.9177 9 7 2.3316 -5.3291 3.8717 10 6 2.1149 -6.7039 3.9127 11 6 0.9537 -7.2402 3.3564 12 6 0.7315 -8.5851 3.3982 13 6 1.6836 -9.4342 3.9956 14 6 1.4634 -10.8279 4.0379 15 1 1.7988 -11.4019 4.8891 16 6 0.8105 -11.4656 2.9776 17 7 0.3270 -10.7595 1.9875 18 14 0.6293 -13.3248 2.9750 19 1 1.2567 -13.8850 4.1987 20 1 -0.8120 -13.6815 2.9504 21 1 1.2986 -13.8857 1.7739 22 6 2.8540 -8.8852 4.5553 23 6 3.0597 -7.5378 4.5104 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6443 1.2950 33 1 1.8019 -2.6238 3.5668 34 1 3.3231 -3.0063 2.7257 35 1 2.7774 -4.8861 4.6106 36 1 0.2265 -6.5883 2.8953 37 1 -0.1704 -8.9983 2.9713 38 1 -0.1254 -11.2017 1.2520 39 1 3.5862 -9.5296 5.0190 40 1 3.9567 -7.1154 4.9387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072707180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:46 Heat of formation + Delta-G solvation = -29.421974 kcal Electronic energy + Delta-G solvation = -19973.090637 eV Core-core repulsion = 16878.267142 eV Total energy + Delta-G solvation = -3094.823495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.62498 -37.24432 -36.40356 -34.45128 -32.94360 -30.48080 -29.45990 -28.52807 -27.58753 -27.38815 -24.78531 -21.63603 -21.10850 -20.54578 -19.58810 -17.30055 -17.18330 -16.44713 -16.15082 -15.55258 -15.23571 -14.97930 -14.61232 -13.98158 -13.96290 -13.63794 -13.34301 -13.03027 -12.73085 -12.53687 -12.41653 -12.13429 -11.99876 -11.69536 -11.47776 -11.35926 -11.19115 -11.14970 -11.04497 -10.89117 -10.50911 -9.94802 -9.88647 -9.86918 -9.51446 -9.03307 -8.76389 -7.62818 -7.52633 -6.89703 -6.58694 -4.32881 1.42215 2.51231 2.54195 2.98265 3.09184 3.11677 3.16621 3.30731 3.68756 3.99831 4.43660 4.53845 4.71951 4.80281 4.95612 4.97515 5.12170 5.17287 5.28459 5.34684 5.40144 5.58608 5.66287 5.66442 5.81394 6.00545 6.11277 6.12073 6.38309 6.76832 6.97447 7.04437 7.19962 7.29253 7.62838 7.65925 7.96067 8.10013 8.15966 8.33222 8.66445 8.71599 8.94008 9.01064 10.32312 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.002679 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.752384 B =10450.631426 C =11094.694610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.106 4.106 5 S -0.175 6.175 6 C -0.128 4.128 7 C 0.513 3.487 8 O -0.505 6.505 9 N -0.649 5.649 10 C 0.003 3.997 11 C -0.092 4.092 12 C -0.144 4.144 13 C 0.100 3.900 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.806 5.806 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.395 0.605 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 19.209 0.106 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 C -0.202 4.202 4 C -0.254 4.254 5 S 0.051 5.949 6 C -0.279 4.279 7 C 0.297 3.703 8 O -0.380 6.380 9 N -0.293 5.293 10 C -0.089 4.089 11 C -0.112 4.112 12 C -0.164 4.164 13 C 0.098 3.902 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.147 4.147 17 N -0.433 5.433 18 Si 0.740 3.260 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.224 4.224 23 C -0.132 4.132 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.228 0.772 36 H 0.126 0.874 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.088 18.254 -1.549 18.438 hybrid contribution 1.089 0.083 1.319 1.713 sum 3.177 18.337 -0.230 18.612 Atomic orbital electron populations 1.21921 0.94316 1.03026 1.01633 1.20845 0.96739 0.95615 0.96656 1.21846 1.00993 0.95274 1.02069 1.23654 1.03600 0.96099 1.02070 1.87610 1.74615 1.05297 1.27338 1.23517 1.05232 0.97960 1.01195 1.19591 0.81117 0.86961 0.82617 1.90766 1.38090 1.70739 1.38368 1.42855 1.59372 1.07586 1.19474 1.17259 0.98381 0.80465 1.12789 1.20650 0.95172 0.96056 0.99344 1.21311 1.00704 0.90990 1.03410 1.17746 0.89528 0.93522 0.89432 1.19518 1.32832 0.92839 1.04107 0.90569 1.25910 0.93053 1.00844 0.94932 1.69802 1.28360 1.37257 1.07862 0.86148 0.78580 0.82122 0.79115 1.18625 1.19977 1.19986 1.20689 0.98697 0.93345 1.09698 1.20066 0.96457 0.93847 1.02872 0.92633 0.92597 0.91225 0.90213 0.92593 0.92157 0.92568 0.90307 0.90320 0.87712 0.87689 0.77163 0.87421 0.85157 0.91080 0.88489 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.02 37.16 0.34 -0.98 16 2 C -0.08 -0.66 2.92 -90.63 -0.26 -0.92 16 3 C -0.14 -0.92 9.19 37.16 0.34 -0.57 16 4 C -0.11 -0.95 5.38 37.15 0.20 -0.75 16 5 S -0.18 -2.36 19.68 -107.50 -2.12 -4.47 16 6 C -0.13 -1.57 6.43 36.00 0.23 -1.34 16 7 C 0.51 9.09 7.68 -10.99 -0.08 9.00 16 8 O -0.50 -11.45 13.28 5.55 0.07 -11.38 16 9 N -0.65 -11.24 5.30 -9.74 -0.05 -11.29 16 10 C 0.00 0.07 6.31 -83.57 -0.53 -0.45 16 11 C -0.09 -2.32 8.61 -39.79 -0.34 -2.67 16 12 C -0.14 -3.91 8.61 -39.26 -0.34 -4.25 16 13 C 0.10 2.71 5.55 -106.80 -0.59 2.12 16 14 C -0.46 -12.41 9.02 -37.85 -0.34 -12.75 16 15 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 16 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 17 N -0.81 -21.75 10.61 55.55 0.59 -21.16 16 18 Si 0.92 19.27 29.56 -169.99 -5.03 14.24 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.20 -4.95 9.74 -39.26 -0.38 -5.33 16 23 C -0.11 -2.45 9.90 -39.79 -0.39 -2.84 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.74 7.14 -51.93 -0.37 0.37 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.40 5.10 8.82 -40.82 -0.36 4.74 16 36 H 0.11 2.75 6.22 -52.49 -0.33 2.42 16 37 H 0.13 3.70 6.15 -52.48 -0.32 3.38 16 38 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -31.28 345.55 -9.57 -40.85 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.00 Total: 8.08 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.25 Total: -20.08 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.54 Total: -32.45 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -2.12 Total: -4.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.28 -9.57 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072707180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.430 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds