Wall clock time and date at job start Tue Mar 31 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47014 * 2 1 4 4 C 1.52989 * 109.47387 * 120.00465 * 2 1 3 5 5 S 1.81394 * 109.47336 * 65.00115 * 4 2 1 6 6 C 1.81401 * 103.00539 * 180.02562 * 5 4 2 7 7 C 1.50695 * 109.47712 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99875 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00428 * 180.02562 * 7 6 5 10 10 C 1.39236 * 120.00141 * 184.29419 * 9 7 6 11 11 C 1.39480 * 119.83106 * 324.70365 * 10 9 7 12 12 C 1.36375 * 120.16649 * 180.30100 * 11 10 9 13 13 C 1.40868 * 119.82898 * 359.48341 * 12 11 10 14 14 C 1.41155 * 120.16304 * 180.25634 * 13 12 11 15 15 H 1.08007 * 119.99709 * 215.01619 * 14 13 12 16 16 C 1.39906 * 120.00720 * 35.00344 * 14 13 12 17 17 N 1.30873 * 119.99293 * 355.55656 * 16 14 13 18 18 Si 1.86797 * 120.00240 * 175.54751 * 16 14 13 19 19 H 1.48494 * 109.47220 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46828 * 120.00790 * 18 16 14 21 21 H 1.48499 * 109.47027 * 240.00626 * 18 16 14 22 22 C 1.40869 * 119.67371 * 0.51350 * 13 12 11 23 23 C 1.36379 * 119.82277 * 359.73907 * 22 13 12 24 24 H 1.08997 * 109.47087 * 299.99415 * 1 2 3 25 25 H 1.09003 * 109.47336 * 59.99948 * 1 2 3 26 26 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47418 * 240.00651 * 2 1 3 28 28 H 1.08997 * 109.47281 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47573 * 300.00237 * 3 2 1 30 30 H 1.09011 * 109.46751 * 60.00419 * 3 2 1 31 31 H 1.09008 * 109.47131 * 305.00081 * 4 2 1 32 32 H 1.08998 * 109.47459 * 185.00248 * 4 2 1 33 33 H 1.08997 * 109.46872 * 59.99368 * 6 5 4 34 34 H 1.09001 * 109.46808 * 300.00599 * 6 5 4 35 35 H 0.97003 * 119.99834 * 4.28293 * 9 7 6 36 36 H 1.08000 * 119.91840 * 0.02701 * 11 10 9 37 37 H 1.08003 * 120.08232 * 179.70255 * 12 11 10 38 38 H 0.97006 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.08862 * 179.71587 * 22 13 12 40 40 H 1.08000 * 119.90940 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 1.5602 -2.4691 1.1763 6 6 2.2419 -3.1440 2.7160 7 6 1.9223 -4.6139 2.8052 8 8 1.2958 -5.1532 1.9177 9 7 2.3316 -5.3291 3.8717 10 6 2.1149 -6.7039 3.9127 11 6 0.9537 -7.2402 3.3564 12 6 0.7315 -8.5851 3.3982 13 6 1.6836 -9.4342 3.9956 14 6 1.4634 -10.8279 4.0379 15 1 1.7988 -11.4019 4.8891 16 6 0.8105 -11.4656 2.9776 17 7 0.3270 -10.7595 1.9875 18 14 0.6293 -13.3248 2.9750 19 1 1.2567 -13.8850 4.1987 20 1 -0.8120 -13.6815 2.9504 21 1 1.2986 -13.8857 1.7739 22 6 2.8540 -8.8852 4.5553 23 6 3.0597 -7.5378 4.5104 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6443 1.2950 33 1 1.8019 -2.6238 3.5668 34 1 3.3231 -3.0063 2.7257 35 1 2.7774 -4.8861 4.6106 36 1 0.2265 -6.5883 2.8953 37 1 -0.1704 -8.9983 2.9713 38 1 -0.1254 -11.2017 1.2520 39 1 3.5862 -9.5296 5.0190 40 1 3.9567 -7.1154 4.9387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072707180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:45 Heat of formation + Delta-G solvation = -47.273815 kcal Electronic energy + Delta-G solvation = -19973.864751 eV Core-core repulsion = 16878.267142 eV Total energy + Delta-G solvation = -3095.597609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19786 -39.05784 -37.05197 -36.19605 -34.73962 -31.92783 -31.34049 -30.15329 -28.29090 -28.00363 -26.62349 -23.38531 -22.90254 -21.49688 -20.99217 -19.24324 -18.64688 -17.91534 -17.27687 -16.97505 -16.62455 -16.01251 -15.76962 -15.42516 -15.19353 -14.91320 -14.67317 -14.42179 -14.11063 -13.96805 -13.63470 -13.39462 -13.29491 -13.10855 -12.87350 -12.74623 -12.60930 -12.33213 -12.01141 -11.86735 -11.79477 -11.68340 -11.66969 -11.25541 -10.83126 -10.75188 -10.52115 -9.46629 -8.78513 -8.62694 -8.50460 -6.33953 0.48014 0.78985 1.12067 1.38361 1.42010 1.54515 1.65174 1.73146 2.22818 2.32652 2.80887 3.65986 3.74543 3.82191 3.90813 4.08790 4.18886 4.24634 4.42885 4.47787 4.53855 4.64049 4.72490 4.83362 4.98507 5.00731 5.05323 5.11335 5.15315 5.24940 5.33134 5.40825 5.41737 5.43203 5.70148 5.84929 6.06639 6.13764 6.34096 6.64349 6.70527 6.95233 7.01103 7.35042 8.42698 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.002679 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.752384 B =10450.631426 C =11094.694610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.081 4.081 5 S -0.260 6.260 6 C -0.104 4.104 7 C 0.508 3.492 8 O -0.561 6.561 9 N -0.638 5.638 10 C 0.020 3.980 11 C -0.108 4.108 12 C -0.170 4.170 13 C 0.065 3.935 14 C -0.495 4.495 15 H 0.081 0.919 16 C 0.020 3.980 17 N -0.848 5.848 18 Si 0.992 3.008 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.209 4.209 23 C -0.105 4.105 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.422 0.578 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.282 0.718 39 H 0.114 0.886 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 21.325 1.566 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.229 4.229 5 S -0.034 6.034 6 C -0.254 4.254 7 C 0.295 3.705 8 O -0.439 6.439 9 N -0.284 5.284 10 C -0.074 4.074 11 C -0.129 4.129 12 C -0.190 4.190 13 C 0.063 3.937 14 C -0.526 4.526 15 H 0.099 0.901 16 C -0.191 4.191 17 N -0.476 5.476 18 Si 0.813 3.187 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.229 4.229 23 C -0.125 4.125 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.260 0.740 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.338 20.422 -0.045 20.877 hybrid contribution 0.426 -0.339 0.855 1.014 sum 4.765 20.082 0.810 20.656 Atomic orbital electron populations 1.21901 0.94868 1.01564 1.02458 1.20880 0.96324 0.96826 0.95992 1.21799 1.01456 0.93508 1.02815 1.23674 1.04615 0.91735 1.02923 1.88041 1.75815 1.10260 1.29271 1.23382 1.07339 0.93417 1.01306 1.20546 0.79388 0.89139 0.81436 1.90765 1.40300 1.72428 1.40370 1.42734 1.59336 1.05650 1.20689 1.17322 0.96769 0.83080 1.10215 1.20655 0.96607 0.95254 1.00346 1.21171 1.00567 0.92121 1.05148 1.18088 0.90796 0.94048 0.90813 1.19800 1.34494 0.93274 1.04983 0.90117 1.26887 0.92169 1.05975 0.94097 1.69929 1.29517 1.39361 1.08747 0.85006 0.78748 0.75569 0.79391 1.17580 1.19304 1.19491 1.20977 0.97990 0.94937 1.09020 1.20454 0.97585 0.92840 1.01629 0.91757 0.91862 0.93777 0.91561 0.91799 0.91664 0.91633 0.88616 0.88597 0.84135 0.84267 0.74001 0.88759 0.87915 0.90786 0.86766 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.02 71.98 0.65 -1.83 16 2 C -0.08 -1.20 2.92 -10.80 -0.03 -1.23 16 3 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 4 C -0.08 -1.24 5.38 71.98 0.39 -0.85 16 5 S -0.26 -6.76 19.68 -56.49 -1.11 -7.87 16 6 C -0.10 -2.22 6.43 71.23 0.46 -1.76 16 7 C 0.51 17.23 7.68 87.66 0.67 17.90 16 8 O -0.56 -25.95 13.28 -3.04 -0.04 -25.99 16 9 N -0.64 -20.43 5.30 -303.13 -1.61 -22.04 16 10 C 0.02 0.86 6.31 38.56 0.24 1.10 16 11 C -0.11 -5.67 8.61 22.13 0.19 -5.48 16 12 C -0.17 -9.75 8.61 22.48 0.19 -9.55 16 13 C 0.06 3.62 5.55 -21.28 -0.12 3.50 16 14 C -0.49 -27.43 9.02 23.39 0.21 -27.22 16 15 H 0.08 4.22 7.85 -2.91 -0.02 4.19 16 16 C 0.02 1.06 5.42 85.24 0.46 1.52 16 17 N -0.85 -48.18 10.61 21.82 0.23 -47.95 16 18 Si 0.99 40.38 29.56 68.60 2.03 42.41 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 C -0.21 -10.01 9.74 22.48 0.22 -9.79 16 23 C -0.11 -4.33 9.90 22.13 0.22 -4.11 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 0.95 7.14 -2.39 -0.02 0.94 16 27 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.42 9.03 8.82 -92.71 -0.82 8.21 16 36 H 0.09 5.10 6.22 -2.91 -0.02 5.08 16 37 H 0.10 6.34 6.15 -2.91 -0.02 6.33 16 38 H 0.28 14.68 8.30 -92.70 -0.77 13.91 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -73.96 345.55 4.13 -69.83 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.22 Total: 30.09 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 4.42 Total: -38.49 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.38 Total: -69.99 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.04 Total: -25.99 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: -6.76 SS G_CDS: -1.11 Total: -7.87 kcal Total: -73.96 4.13 -69.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072707180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.556 kcal (2) G-P(sol) polarization free energy of solvation -73.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds