Wall clock time and date at job start Tue Mar 31 2020 08:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46983 * 2 1 4 4 C 1.53002 * 109.46920 * 120.00219 * 2 1 3 5 5 C 1.50694 * 109.47118 * 294.99517 * 4 2 1 6 6 O 1.21299 * 119.99956 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00291 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99470 * 0.02562 * 7 5 4 9 9 C 1.37095 * 119.99897 * 180.02562 * 7 5 4 10 10 H 1.07991 * 120.00220 * 24.39678 * 9 7 5 11 11 C 1.38954 * 119.99262 * 204.39843 * 9 7 5 12 12 N 1.31410 * 120.00398 * 12.63973 * 11 9 7 13 13 Si 1.86800 * 119.99500 * 192.64153 * 11 9 7 14 14 H 1.48500 * 109.47385 * 59.99847 * 13 11 9 15 15 H 1.48495 * 109.47454 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47289 * 299.99908 * 13 11 9 17 17 C 1.50706 * 109.47088 * 239.99894 * 2 1 3 18 18 O 1.21249 * 120.00256 * 270.00107 * 17 2 1 19 19 C 1.47173 * 119.99788 * 90.00097 * 17 2 1 20 20 C 1.39868 * 120.16009 * 180.02562 * 19 17 2 21 21 C 1.37872 * 119.88085 * 179.97438 * 20 19 17 22 22 C 1.38388 * 120.19576 * 0.27325 * 21 20 19 23 23 C 1.38592 * 120.32908 * 359.44528 * 22 21 20 24 24 F 1.35098 * 119.94540 * 180.27874 * 23 22 21 25 25 C 1.38144 * 120.11347 * 0.55406 * 23 22 21 26 26 H 1.08997 * 109.47037 * 299.99406 * 1 2 3 27 27 H 1.08999 * 109.47388 * 60.00433 * 1 2 3 28 28 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47344 * 55.00424 * 4 2 1 30 30 H 1.09002 * 109.46655 * 175.00011 * 4 2 1 31 31 H 1.09001 * 109.47064 * 85.86378 * 8 7 5 32 32 H 1.09003 * 109.46466 * 205.86089 * 8 7 5 33 33 H 1.08996 * 109.47300 * 325.86179 * 8 7 5 34 34 H 0.97001 * 119.99433 * 179.97438 * 12 11 9 35 35 H 1.08008 * 120.05810 * 359.94767 * 20 19 17 36 36 H 1.08000 * 119.90491 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.83699 * 179.72169 * 22 21 20 38 38 H 1.08001 * 120.10176 * 179.74420 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0871 2.3633 7 7 1.9854 -0.3915 3.7002 8 6 2.7472 -1.6353 3.8369 9 6 1.6222 0.3164 4.8167 10 1 0.7681 0.9763 4.7836 11 6 2.3534 0.1846 5.9909 12 7 3.5237 -0.4129 5.9728 13 14 1.6727 0.8568 7.5953 14 1 0.3799 0.1932 7.9012 15 1 2.6371 0.5903 8.6926 16 1 1.4595 2.3209 7.4678 17 6 2.0324 -0.7105 -1.2305 18 8 2.2344 -1.9056 -1.2005 19 6 2.2777 0.0465 -2.4686 20 6 2.7434 -0.6095 -3.6127 21 6 2.9707 0.1051 -4.7696 22 6 2.7449 1.4701 -4.8003 23 6 2.2779 2.1277 -3.6732 24 9 2.0548 3.4595 -3.7135 25 6 2.0457 1.4246 -2.5070 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2055 31 1 3.8121 -1.4210 3.7454 32 1 2.5481 -2.0777 4.8130 33 1 2.4483 -2.3324 3.0541 34 1 4.0342 -0.5045 6.7925 35 1 2.9250 -1.6740 -3.5898 36 1 3.3307 -0.4010 -5.6532 37 1 2.9292 2.0250 -5.7084 38 1 1.6857 1.9380 -1.6276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073207566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:38 Heat of formation + Delta-G solvation = -88.916731 kcal Electronic energy + Delta-G solvation = -22887.780470 eV Core-core repulsion = 19224.163913 eV Total energy + Delta-G solvation = -3663.616558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.10489 -40.33020 -38.66696 -38.00656 -34.99084 -33.68646 -31.75464 -31.47245 -30.71317 -27.76033 -26.09767 -25.37215 -24.22266 -23.23346 -22.10323 -19.75204 -18.49886 -17.88116 -16.86997 -16.67746 -16.43493 -16.02507 -15.83573 -15.41588 -14.96310 -14.79504 -14.41493 -14.15446 -14.04609 -13.89854 -13.29414 -13.15143 -12.55001 -12.37053 -12.21848 -12.07468 -11.90072 -11.72922 -11.50749 -11.27972 -11.13730 -10.89721 -10.70637 -10.63466 -10.38598 -10.19693 -9.55275 -9.41875 -9.04649 -8.98290 -8.33279 -7.63491 -6.31074 -3.87517 0.32713 0.88469 2.23780 3.19527 3.25154 3.28807 3.40534 3.74485 3.90918 4.00572 4.17747 4.40006 4.61136 4.81494 4.92830 4.97496 5.00793 5.12690 5.27734 5.39324 5.50769 5.65984 5.69420 5.75556 5.89409 5.93898 5.98724 6.08673 6.12422 6.26291 6.39838 6.47723 6.51507 6.72673 6.87929 7.22066 7.48133 7.57511 8.15702 8.49899 9.19849 9.44324 10.00217 10.73828 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.003352 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.995585 B = 8352.303047 C = 8875.538751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.118 4.118 5 C 0.448 3.552 6 O -0.589 6.589 7 N -0.445 5.445 8 C 0.110 3.890 9 C -0.308 4.308 10 H 0.098 0.902 11 C 0.031 3.969 12 N -0.882 5.882 13 Si 0.926 3.074 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.402 3.598 18 O -0.446 6.446 19 C -0.134 4.134 20 C -0.076 4.076 21 C -0.105 4.105 22 C -0.128 4.128 23 C 0.087 3.913 24 F -0.136 7.136 25 C -0.105 4.105 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.027 0.973 34 H 0.268 0.732 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 -0.871 -18.623 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 H 0.120 0.880 4 C -0.159 4.159 5 C 0.237 3.763 6 O -0.475 6.475 7 N -0.163 5.163 8 C -0.034 4.034 9 C -0.436 4.436 10 H 0.115 0.885 11 C -0.173 4.173 12 N -0.521 5.521 13 Si 0.753 3.247 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.198 1.198 17 C 0.279 3.721 18 O -0.320 6.320 19 C -0.135 4.135 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.147 4.147 23 C 0.068 3.932 24 F -0.115 7.115 25 C -0.124 4.124 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.341 -1.025 -18.473 18.505 hybrid contribution 0.006 0.538 0.806 0.969 sum -0.335 -0.487 -17.667 17.677 Atomic orbital electron populations 1.21833 0.91795 1.02195 1.04074 1.21322 0.98729 1.01307 0.91889 0.87967 1.21430 1.01775 0.99973 0.92685 1.19935 0.85627 0.86704 0.84071 1.90460 1.44882 1.26113 1.86023 1.43566 1.47876 1.20257 1.04626 1.21493 0.95956 0.85420 1.00493 1.19600 1.12068 1.24471 0.87457 0.88459 1.25349 0.94623 0.97287 1.00004 1.69990 1.10534 1.43036 1.28577 0.86003 0.78486 0.79536 0.80690 1.19939 1.20988 1.19787 1.22709 0.72779 0.88298 0.88284 1.90493 1.39477 1.16625 1.85372 1.20499 1.02930 0.93723 0.96344 1.21531 0.95294 1.01102 0.91459 1.21000 0.99744 0.93067 0.98514 1.21404 0.99871 0.95582 0.97852 1.17590 1.02459 0.77966 0.95193 1.91534 1.92479 1.30422 1.97023 1.21658 0.98855 0.93922 0.97981 0.88307 0.93072 0.92968 0.89605 0.90260 0.93035 0.90748 0.95411 0.92214 0.84165 0.84391 0.84374 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.92 37.16 0.33 -1.85 16 2 C -0.11 -1.81 1.81 -91.77 -0.17 -1.97 16 3 H 0.10 1.63 6.28 -51.93 -0.33 1.30 16 4 C -0.12 -2.20 3.29 -27.88 -0.09 -2.30 16 5 C 0.45 10.65 7.34 -10.99 -0.08 10.56 16 6 O -0.59 -15.30 13.68 5.54 0.08 -15.22 16 7 N -0.44 -11.41 3.01 -122.19 -0.37 -11.78 16 8 C 0.11 2.50 8.44 59.85 0.51 3.01 16 9 C -0.31 -8.58 9.24 -14.93 -0.14 -8.71 16 10 H 0.10 2.80 7.45 -52.49 -0.39 2.41 16 11 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 12 N -0.88 -23.69 10.83 55.50 0.60 -23.09 16 13 Si 0.93 20.78 29.57 -169.99 -5.03 15.75 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.40 5.82 6.17 -30.68 -0.19 5.64 16 18 O -0.45 -7.28 16.27 5.58 0.09 -7.19 16 19 C -0.13 -1.63 5.87 -105.07 -0.62 -2.25 16 20 C -0.08 -0.77 9.60 -39.11 -0.38 -1.15 16 21 C -0.11 -0.85 10.03 -39.66 -0.40 -1.24 16 22 C -0.13 -1.10 10.02 -39.40 -0.39 -1.49 16 23 C 0.09 0.94 7.29 -39.49 -0.29 0.65 16 24 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 25 C -0.11 -1.22 9.34 -39.03 -0.36 -1.58 16 26 H 0.10 1.80 5.95 -51.93 -0.31 1.50 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.54 7.29 -51.93 -0.38 1.16 16 30 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.05 1.20 7.83 -51.93 -0.41 0.79 16 32 H 0.07 1.77 6.80 -51.93 -0.35 1.42 16 33 H 0.03 0.53 6.61 -51.93 -0.34 0.19 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.14 1.35 7.65 -52.48 -0.40 0.95 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.15 1.73 6.36 -52.49 -0.33 1.40 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -30.94 325.37 -6.53 -37.47 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.49 Total: 2.67 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.35 Total: -1.98 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.23 Total: -34.87 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.17 Total: -22.41 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.94 -6.53 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073207566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.446 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds