Wall clock time and date at job start Tue Mar 31 2020 08:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46983 * 2 1 4 4 C 1.53002 * 109.46920 * 120.00219 * 2 1 3 5 5 C 1.50694 * 109.47118 * 294.99517 * 4 2 1 6 6 O 1.21299 * 119.99956 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00291 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99470 * 0.02562 * 7 5 4 9 9 C 1.37095 * 119.99897 * 180.02562 * 7 5 4 10 10 H 1.07991 * 120.00220 * 24.39678 * 9 7 5 11 11 C 1.38954 * 119.99262 * 204.39843 * 9 7 5 12 12 N 1.31410 * 120.00398 * 12.63973 * 11 9 7 13 13 Si 1.86800 * 119.99500 * 192.64153 * 11 9 7 14 14 H 1.48500 * 109.47385 * 59.99847 * 13 11 9 15 15 H 1.48495 * 109.47454 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47289 * 299.99908 * 13 11 9 17 17 C 1.50706 * 109.47088 * 239.99894 * 2 1 3 18 18 O 1.21249 * 120.00256 * 270.00107 * 17 2 1 19 19 C 1.47173 * 119.99788 * 90.00097 * 17 2 1 20 20 C 1.39868 * 120.16009 * 180.02562 * 19 17 2 21 21 C 1.37872 * 119.88085 * 179.97438 * 20 19 17 22 22 C 1.38388 * 120.19576 * 0.27325 * 21 20 19 23 23 C 1.38592 * 120.32908 * 359.44528 * 22 21 20 24 24 F 1.35098 * 119.94540 * 180.27874 * 23 22 21 25 25 C 1.38144 * 120.11347 * 0.55406 * 23 22 21 26 26 H 1.08997 * 109.47037 * 299.99406 * 1 2 3 27 27 H 1.08999 * 109.47388 * 60.00433 * 1 2 3 28 28 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47344 * 55.00424 * 4 2 1 30 30 H 1.09002 * 109.46655 * 175.00011 * 4 2 1 31 31 H 1.09001 * 109.47064 * 85.86378 * 8 7 5 32 32 H 1.09003 * 109.46466 * 205.86089 * 8 7 5 33 33 H 1.08996 * 109.47300 * 325.86179 * 8 7 5 34 34 H 0.97001 * 119.99433 * 179.97438 * 12 11 9 35 35 H 1.08008 * 120.05810 * 359.94767 * 20 19 17 36 36 H 1.08000 * 119.90491 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.83699 * 179.72169 * 22 21 20 38 38 H 1.08001 * 120.10176 * 179.74420 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0871 2.3633 7 7 1.9854 -0.3915 3.7002 8 6 2.7472 -1.6353 3.8369 9 6 1.6222 0.3164 4.8167 10 1 0.7681 0.9763 4.7836 11 6 2.3534 0.1846 5.9909 12 7 3.5237 -0.4129 5.9728 13 14 1.6727 0.8568 7.5953 14 1 0.3799 0.1932 7.9012 15 1 2.6371 0.5903 8.6926 16 1 1.4595 2.3209 7.4678 17 6 2.0324 -0.7105 -1.2305 18 8 2.2344 -1.9056 -1.2005 19 6 2.2777 0.0465 -2.4686 20 6 2.7434 -0.6095 -3.6127 21 6 2.9707 0.1051 -4.7696 22 6 2.7449 1.4701 -4.8003 23 6 2.2779 2.1277 -3.6732 24 9 2.0548 3.4595 -3.7135 25 6 2.0457 1.4246 -2.5070 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2055 31 1 3.8121 -1.4210 3.7454 32 1 2.5481 -2.0777 4.8130 33 1 2.4483 -2.3324 3.0541 34 1 4.0342 -0.5045 6.7925 35 1 2.9250 -1.6740 -3.5898 36 1 3.3307 -0.4010 -5.6532 37 1 2.9292 2.0250 -5.7084 38 1 1.6857 1.9380 -1.6276 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073207566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:37 Heat of formation + Delta-G solvation = -105.923728 kcal Electronic energy + Delta-G solvation = -22888.517949 eV Core-core repulsion = 19224.163913 eV Total energy + Delta-G solvation = -3664.354036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.94700 -41.47373 -40.28368 -39.09402 -36.84849 -35.17103 -33.65914 -32.47806 -31.49815 -29.37322 -27.93783 -26.52506 -25.98954 -24.15938 -23.14244 -21.07025 -20.05587 -19.00684 -18.79892 -17.95734 -17.31559 -17.15019 -16.76878 -16.69445 -16.61734 -16.08659 -15.90678 -15.72574 -15.41651 -15.06344 -14.47487 -14.30071 -14.07673 -13.64860 -13.61181 -13.36404 -13.19631 -13.12274 -12.91111 -12.78047 -12.66202 -12.53093 -12.35862 -12.15561 -12.11662 -11.88314 -10.98719 -10.75734 -10.24898 -10.19159 -9.84160 -9.64547 -8.33604 -5.98695 -0.54453 0.11502 1.24345 1.39505 1.41190 1.51766 2.03253 2.27317 2.58270 2.67892 3.09239 3.11496 3.27468 3.60627 3.70936 3.91780 3.99905 4.04577 4.10475 4.22549 4.31827 4.45055 4.59134 4.62644 4.72107 4.74188 4.89207 4.90381 5.01071 5.01284 5.11050 5.16102 5.29168 5.32927 5.38691 5.45617 5.76572 6.10889 6.35587 6.48706 7.17108 7.47857 8.04075 8.69755 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.003352 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.995585 B = 8352.303047 C = 8875.538751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.108 4.108 5 C 0.443 3.557 6 O -0.617 6.617 7 N -0.465 5.465 8 C 0.121 3.879 9 C -0.345 4.345 10 H 0.075 0.925 11 C -0.004 4.004 12 N -0.899 5.899 13 Si 0.990 3.010 14 H -0.267 1.267 15 H -0.272 1.272 16 H -0.276 1.276 17 C 0.414 3.586 18 O -0.467 6.467 19 C -0.152 4.152 20 C -0.075 4.075 21 C -0.093 4.093 22 C -0.113 4.113 23 C 0.070 3.930 24 F -0.145 7.145 25 C -0.115 4.115 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.273 0.727 35 H 0.147 0.853 36 H 0.177 0.823 37 H 0.169 0.831 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -1.388 -20.678 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 H 0.116 0.884 4 C -0.148 4.148 5 C 0.232 3.768 6 O -0.504 6.504 7 N -0.184 5.184 8 C -0.022 4.022 9 C -0.473 4.473 10 H 0.093 0.907 11 C -0.205 4.205 12 N -0.537 5.537 13 Si 0.813 3.187 14 H -0.192 1.192 15 H -0.196 1.196 16 H -0.201 1.201 17 C 0.293 3.707 18 O -0.343 6.343 19 C -0.153 4.153 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.132 4.132 23 C 0.051 3.949 24 F -0.124 7.124 25 C -0.134 4.134 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.165 0.835 36 H 0.195 0.805 37 H 0.186 0.814 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.215 -1.552 -20.540 20.599 hybrid contribution -0.147 0.739 1.343 1.540 sum 0.068 -0.813 -19.197 19.214 Atomic orbital electron populations 1.21724 0.91488 1.02415 1.03665 1.21308 0.99115 1.01076 0.91818 0.88370 1.21353 1.02261 0.99840 0.91304 1.20788 0.84308 0.86673 0.84990 1.90436 1.45770 1.27559 1.86673 1.43838 1.48565 1.21177 1.04830 1.21410 0.95057 0.84909 1.00849 1.19612 1.12516 1.25849 0.89335 0.90741 1.26113 0.94679 0.97200 1.02552 1.70066 1.11011 1.43110 1.29556 0.85055 0.78282 0.78527 0.76833 1.19185 1.19619 1.20092 1.22516 0.71895 0.87889 0.88417 1.90485 1.40825 1.17304 1.85730 1.20250 1.05366 0.93709 0.96020 1.21741 0.94541 1.01622 0.91450 1.21404 0.98047 0.92717 0.98835 1.21794 0.97523 0.95958 0.97892 1.17797 1.03506 0.77735 0.95828 1.91512 1.92698 1.31068 1.97082 1.21604 0.99467 0.93922 0.98359 0.91482 0.90628 0.92373 0.88527 0.89509 0.94013 0.92341 0.91947 0.91749 0.83522 0.80531 0.81394 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.92 71.98 0.64 -3.57 16 2 C -0.11 -3.65 1.81 -11.54 -0.02 -3.67 16 3 H 0.10 3.22 6.28 -2.39 -0.01 3.21 16 4 C -0.11 -4.02 3.29 29.85 0.10 -3.92 16 5 C 0.44 21.58 7.34 87.65 0.64 22.23 16 6 O -0.62 -33.35 13.68 -3.09 -0.04 -33.40 16 7 N -0.47 -24.47 3.01 -658.89 -1.98 -26.45 16 8 C 0.12 5.53 8.44 127.77 1.08 6.61 16 9 C -0.35 -19.83 9.24 84.04 0.78 -19.05 16 10 H 0.07 4.50 7.45 -2.91 -0.02 4.48 16 11 C 0.00 -0.21 5.04 84.93 0.43 0.22 16 12 N -0.90 -48.55 10.83 21.66 0.23 -48.32 16 13 Si 0.99 42.87 29.57 68.60 2.03 44.90 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.41 11.68 6.17 28.04 0.17 11.85 16 18 O -0.47 -14.77 16.27 -2.93 -0.05 -14.81 16 19 C -0.15 -3.51 5.87 -20.16 -0.12 -3.63 16 20 C -0.08 -1.34 9.60 22.58 0.22 -1.12 16 21 C -0.09 -1.11 10.03 22.22 0.22 -0.88 16 22 C -0.11 -1.53 10.02 22.39 0.22 -1.30 16 23 C 0.07 1.40 7.29 22.33 0.16 1.56 16 24 F -0.14 -3.22 17.26 44.97 0.78 -2.44 16 25 C -0.11 -2.57 9.34 22.63 0.21 -2.36 16 26 H 0.07 2.54 5.95 -2.39 -0.01 2.52 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 3.40 7.29 -2.39 -0.02 3.39 16 30 H 0.09 3.11 8.11 -2.39 -0.02 3.09 16 31 H 0.04 1.95 7.83 -2.39 -0.02 1.94 16 32 H 0.06 2.82 6.80 -2.39 -0.02 2.80 16 33 H 0.06 2.36 6.61 -2.39 -0.02 2.34 16 34 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.15 2.42 7.65 -2.91 -0.02 2.40 16 36 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.14 3.34 6.36 -2.91 -0.02 3.32 16 Total: -1.00 -68.39 325.37 6.79 -61.60 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.09 Total: 15.97 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.74 Total: 2.95 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.75 Total: -74.77 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.09 Total: -48.21 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.39 6.79 -61.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073207566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.327 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds