Wall clock time and date at job start Tue Mar 31 2020 08:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47583 * 2 1 4 4 C 1.53006 * 109.46923 * 239.99979 * 2 1 3 5 5 C 1.50703 * 109.46843 * 65.00253 * 4 2 1 6 6 O 1.21288 * 120.00077 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99562 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00083 * 0.02562 * 7 5 4 9 9 C 1.37101 * 119.99625 * 179.97438 * 7 5 4 10 10 H 1.07999 * 119.99707 * 24.40438 * 9 7 5 11 11 C 1.38947 * 120.00074 * 204.39817 * 9 7 5 12 12 N 1.31414 * 119.99647 * 12.63968 * 11 9 7 13 13 Si 1.86797 * 120.00012 * 192.64357 * 11 9 7 14 14 H 1.48503 * 109.47154 * 89.99910 * 13 11 9 15 15 H 1.48503 * 109.47108 * 209.99766 * 13 11 9 16 16 H 1.48496 * 109.47169 * 329.99688 * 13 11 9 17 17 C 1.50696 * 109.47062 * 120.00568 * 2 1 3 18 18 O 1.21256 * 120.00792 * 94.99633 * 17 2 1 19 19 C 1.47178 * 119.99961 * 274.99255 * 17 2 1 20 20 C 1.39865 * 120.15903 * 179.97438 * 19 17 2 21 21 C 1.37885 * 119.87273 * 179.97438 * 20 19 17 22 22 C 1.38380 * 120.20294 * 359.97438 * 21 20 19 23 23 C 1.38597 * 120.32432 * 0.02562 * 22 21 20 24 24 F 1.35104 * 119.93852 * 179.97438 * 23 22 21 25 25 C 1.38144 * 120.11774 * 359.74287 * 23 22 21 26 26 H 1.09000 * 109.47226 * 59.99310 * 1 2 3 27 27 H 1.08998 * 109.47989 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47006 * 300.00403 * 1 2 3 29 29 H 1.08998 * 109.47346 * 185.00211 * 4 2 1 30 30 H 1.09000 * 109.47219 * 305.00559 * 4 2 1 31 31 H 1.08996 * 109.46880 * 85.86202 * 8 7 5 32 32 H 1.09005 * 109.47050 * 205.85654 * 8 7 5 33 33 H 1.08992 * 109.47327 * 325.85777 * 8 7 5 34 34 H 0.97000 * 119.99623 * 179.97438 * 12 11 9 35 35 H 1.07996 * 120.06633 * 0.02562 * 20 19 17 36 36 H 1.07997 * 119.89552 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.83696 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.09856 * 180.25529 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0876 -2.3632 7 7 1.9852 -0.3914 -3.7002 8 6 2.7461 -1.6357 -3.8370 9 6 1.6221 0.3165 -4.8168 10 1 1.4279 1.3764 -4.7446 11 6 1.5040 -0.3298 -6.0411 12 7 1.4936 -1.6428 -6.0926 13 14 1.3602 0.6679 -7.6138 14 1 2.7160 0.9264 -8.1618 15 1 0.5601 -0.0898 -8.6093 16 1 0.6901 1.9603 -7.3206 17 6 2.0322 -0.7105 1.2304 18 8 2.3206 -1.8870 1.1760 19 6 2.1729 0.0236 2.4982 20 6 2.6383 -0.6326 3.6423 21 6 2.7684 0.0610 4.8268 22 6 2.4404 1.4040 4.8867 23 6 1.9785 2.0626 3.7581 24 9 1.6601 3.3738 3.8255 25 6 1.8476 1.3817 2.5632 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1262 -0.7996 -1.2057 30 1 1.6052 -1.7198 -1.2953 31 1 2.0594 -2.4820 -3.8493 32 1 3.3131 -1.6144 -4.7678 33 1 3.4321 -1.7365 -2.9961 34 1 1.4108 -2.0940 -6.9473 35 1 2.8961 -1.6805 3.5978 36 1 3.1273 -0.4455 5.7106 37 1 2.5442 1.9415 5.8177 38 1 1.4915 1.8962 1.6829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073207569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:41 Heat of formation + Delta-G solvation = -89.150493 kcal Electronic energy + Delta-G solvation = -22881.271072 eV Core-core repulsion = 19217.644377 eV Total energy + Delta-G solvation = -3663.626694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.11805 -40.33565 -38.66900 -38.00673 -34.99116 -33.69544 -31.75827 -31.46668 -30.72255 -27.74996 -26.08887 -25.36273 -24.22647 -23.22561 -22.12118 -19.76236 -18.48643 -17.86440 -16.87425 -16.67966 -16.45158 -16.01918 -15.85112 -15.51707 -14.95590 -14.65825 -14.43362 -14.26454 -13.99606 -13.90426 -13.30393 -13.13550 -12.52441 -12.27941 -12.22594 -12.09820 -12.02015 -11.74466 -11.38485 -11.27992 -11.15669 -10.93667 -10.72012 -10.60502 -10.34209 -10.19653 -9.56633 -9.42695 -9.05765 -8.98692 -8.32110 -7.63956 -6.30740 -3.87434 0.31973 0.87267 2.23414 3.17133 3.25879 3.31088 3.39651 3.73522 3.90974 4.00261 4.17582 4.39158 4.60106 4.80774 4.92587 4.96806 5.00584 5.13188 5.27466 5.39693 5.50182 5.65554 5.68923 5.74722 5.88465 5.92972 5.99607 6.11692 6.14884 6.23355 6.44553 6.46463 6.50311 6.75971 6.89024 7.22832 7.48065 7.57979 8.16080 8.50095 9.20103 9.44574 10.00391 10.74073 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.003308 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.761812 B = 8462.852676 C = 9122.674820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 H 0.103 0.897 4 C -0.118 4.118 5 C 0.448 3.552 6 O -0.589 6.589 7 N -0.446 5.446 8 C 0.111 3.889 9 C -0.307 4.307 10 H 0.098 0.902 11 C 0.030 3.970 12 N -0.882 5.882 13 Si 0.926 3.074 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.401 3.599 18 O -0.445 6.445 19 C -0.133 4.133 20 C -0.076 4.076 21 C -0.105 4.105 22 C -0.128 4.128 23 C 0.087 3.913 24 F -0.136 7.136 25 C -0.105 4.105 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.267 0.733 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 1.389 19.003 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 H 0.121 0.879 4 C -0.159 4.159 5 C 0.237 3.763 6 O -0.475 6.475 7 N -0.164 5.164 8 C -0.033 4.033 9 C -0.435 4.435 10 H 0.116 0.884 11 C -0.173 4.173 12 N -0.521 5.521 13 Si 0.752 3.248 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.194 1.194 17 C 0.278 3.722 18 O -0.319 6.319 19 C -0.134 4.134 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.147 4.147 23 C 0.068 3.932 24 F -0.115 7.115 25 C -0.124 4.124 26 H 0.118 0.882 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.953 1.151 18.836 19.101 hybrid contribution -0.026 0.514 -0.800 0.951 sum 2.927 1.665 18.036 18.347 Atomic orbital electron populations 1.21842 0.91722 1.02317 1.04088 1.21307 0.98808 1.01200 0.91871 0.87938 1.21434 1.01518 1.00230 0.92670 1.19945 0.84073 0.87966 0.84346 1.90457 1.44463 1.26375 1.86180 1.43579 1.46348 1.21726 1.04732 1.21488 0.94824 0.87280 0.99727 1.19655 1.45160 0.93766 0.84952 0.88405 1.25352 0.96535 0.95680 0.99738 1.70002 1.48543 1.07212 1.26332 0.85935 0.78239 0.79673 0.80905 1.20412 1.20984 1.19363 1.22721 0.72988 0.87826 0.88643 1.90502 1.37705 1.17165 1.86511 1.20500 1.02762 0.93994 0.96184 1.21535 0.95520 1.00933 0.91409 1.21002 0.99639 0.93342 0.98330 1.21401 0.99717 0.95668 0.97944 1.17593 1.01964 0.78765 0.94908 1.91535 1.90561 1.32385 1.96996 1.21648 0.98869 0.94148 0.97766 0.88239 0.92919 0.93068 0.90450 0.89429 0.92954 0.90772 0.95512 0.92271 0.84159 0.84396 0.84382 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.92 37.15 0.33 -1.92 16 2 C -0.11 -1.79 1.67 -91.77 -0.15 -1.95 16 3 H 0.10 1.60 6.54 -51.93 -0.34 1.26 16 4 C -0.12 -2.21 3.23 -27.88 -0.09 -2.30 16 5 C 0.45 10.65 7.34 -10.98 -0.08 10.57 16 6 O -0.59 -15.30 13.68 5.55 0.08 -15.22 16 7 N -0.45 -11.43 3.01 -122.20 -0.37 -11.80 16 8 C 0.11 2.51 8.44 59.85 0.51 3.02 16 9 C -0.31 -8.56 9.24 -14.93 -0.14 -8.70 16 10 H 0.10 2.83 7.45 -52.49 -0.39 2.44 16 11 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 12 N -0.88 -23.69 10.83 55.50 0.60 -23.09 16 13 Si 0.93 20.78 29.57 -169.99 -5.03 15.76 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C 0.40 5.79 6.23 -30.68 -0.19 5.59 16 18 O -0.44 -7.29 16.19 5.58 0.09 -7.20 16 19 C -0.13 -1.60 5.87 -105.07 -0.62 -2.22 16 20 C -0.08 -0.76 9.60 -39.10 -0.38 -1.14 16 21 C -0.11 -0.83 10.03 -39.66 -0.40 -1.23 16 22 C -0.13 -1.08 10.02 -39.40 -0.39 -1.47 16 23 C 0.09 0.92 7.29 -39.48 -0.29 0.63 16 24 F -0.14 -1.55 17.26 2.25 0.04 -1.51 16 25 C -0.11 -1.20 9.35 -39.03 -0.36 -1.56 16 26 H 0.10 1.88 5.95 -51.93 -0.31 1.57 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.08 1.35 7.41 -51.93 -0.38 0.96 16 30 H 0.09 1.64 8.00 -51.93 -0.42 1.22 16 31 H 0.05 1.22 7.82 -51.93 -0.41 0.82 16 32 H 0.07 1.77 6.80 -51.93 -0.35 1.42 16 33 H 0.03 0.51 6.61 -51.93 -0.34 0.17 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.14 1.34 7.65 -52.49 -0.40 0.94 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.15 1.69 6.47 -52.49 -0.34 1.35 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -30.96 325.52 -6.53 -37.49 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.51 Total: 2.62 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.34 Total: -1.96 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.23 Total: -34.89 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.17 Total: -22.42 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.96 -6.53 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073207569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.659 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds