Wall clock time and date at job start Tue Mar 31 2020 08:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47583 * 2 1 4 4 C 1.53006 * 109.46923 * 239.99979 * 2 1 3 5 5 C 1.50703 * 109.46843 * 65.00253 * 4 2 1 6 6 O 1.21288 * 120.00077 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99562 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00083 * 0.02562 * 7 5 4 9 9 C 1.37101 * 119.99625 * 179.97438 * 7 5 4 10 10 H 1.07999 * 119.99707 * 24.40438 * 9 7 5 11 11 C 1.38947 * 120.00074 * 204.39817 * 9 7 5 12 12 N 1.31414 * 119.99647 * 12.63968 * 11 9 7 13 13 Si 1.86797 * 120.00012 * 192.64357 * 11 9 7 14 14 H 1.48503 * 109.47154 * 89.99910 * 13 11 9 15 15 H 1.48503 * 109.47108 * 209.99766 * 13 11 9 16 16 H 1.48496 * 109.47169 * 329.99688 * 13 11 9 17 17 C 1.50696 * 109.47062 * 120.00568 * 2 1 3 18 18 O 1.21256 * 120.00792 * 94.99633 * 17 2 1 19 19 C 1.47178 * 119.99961 * 274.99255 * 17 2 1 20 20 C 1.39865 * 120.15903 * 179.97438 * 19 17 2 21 21 C 1.37885 * 119.87273 * 179.97438 * 20 19 17 22 22 C 1.38380 * 120.20294 * 359.97438 * 21 20 19 23 23 C 1.38597 * 120.32432 * 0.02562 * 22 21 20 24 24 F 1.35104 * 119.93852 * 179.97438 * 23 22 21 25 25 C 1.38144 * 120.11774 * 359.74287 * 23 22 21 26 26 H 1.09000 * 109.47226 * 59.99310 * 1 2 3 27 27 H 1.08998 * 109.47989 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47006 * 300.00403 * 1 2 3 29 29 H 1.08998 * 109.47346 * 185.00211 * 4 2 1 30 30 H 1.09000 * 109.47219 * 305.00559 * 4 2 1 31 31 H 1.08996 * 109.46880 * 85.86202 * 8 7 5 32 32 H 1.09005 * 109.47050 * 205.85654 * 8 7 5 33 33 H 1.08992 * 109.47327 * 325.85777 * 8 7 5 34 34 H 0.97000 * 119.99623 * 179.97438 * 12 11 9 35 35 H 1.07996 * 120.06633 * 0.02562 * 20 19 17 36 36 H 1.07997 * 119.89552 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.83696 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.09856 * 180.25529 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0876 -2.3632 7 7 1.9852 -0.3914 -3.7002 8 6 2.7461 -1.6357 -3.8370 9 6 1.6221 0.3165 -4.8168 10 1 1.4279 1.3764 -4.7446 11 6 1.5040 -0.3298 -6.0411 12 7 1.4936 -1.6428 -6.0926 13 14 1.3602 0.6679 -7.6138 14 1 2.7160 0.9264 -8.1618 15 1 0.5601 -0.0898 -8.6093 16 1 0.6901 1.9603 -7.3206 17 6 2.0322 -0.7105 1.2304 18 8 2.3206 -1.8870 1.1760 19 6 2.1729 0.0236 2.4982 20 6 2.6383 -0.6326 3.6423 21 6 2.7684 0.0610 4.8268 22 6 2.4404 1.4040 4.8867 23 6 1.9785 2.0626 3.7581 24 9 1.6601 3.3738 3.8255 25 6 1.8476 1.3817 2.5632 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1262 -0.7996 -1.2057 30 1 1.6052 -1.7198 -1.2953 31 1 2.0594 -2.4820 -3.8493 32 1 3.3131 -1.6144 -4.7678 33 1 3.4321 -1.7365 -2.9961 34 1 1.4108 -2.0940 -6.9473 35 1 2.8961 -1.6805 3.5978 36 1 3.1273 -0.4455 5.7106 37 1 2.5442 1.9415 5.8177 38 1 1.4915 1.8962 1.6829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073207569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:41 Heat of formation + Delta-G solvation = -106.209475 kcal Electronic energy + Delta-G solvation = -22882.010805 eV Core-core repulsion = 19217.644377 eV Total energy + Delta-G solvation = -3664.366427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.93858 -41.47491 -40.28276 -39.08884 -36.85054 -35.18301 -33.66058 -32.47012 -31.49174 -29.37102 -27.93554 -26.51976 -25.99267 -24.13921 -23.15525 -21.07158 -20.04623 -19.00283 -18.77208 -17.96830 -17.33982 -17.15068 -16.89037 -16.67157 -16.35226 -16.21729 -15.88012 -15.81133 -15.39158 -15.04442 -14.48787 -14.24063 -13.99465 -13.85031 -13.57812 -13.28002 -13.17460 -13.14919 -12.91980 -12.76224 -12.65540 -12.51093 -12.45279 -12.13690 -12.01008 -11.96382 -11.00112 -10.75195 -10.23988 -10.18289 -9.83580 -9.65391 -8.33401 -5.98812 -0.53900 0.12042 1.24811 1.37819 1.41106 1.53484 2.03148 2.27303 2.58908 2.67712 3.09106 3.11889 3.27834 3.60774 3.71978 3.92289 3.98167 4.05689 4.10030 4.23136 4.31970 4.45232 4.58745 4.65031 4.69993 4.75182 4.88973 4.90638 5.00693 5.01815 5.10405 5.16744 5.29788 5.34068 5.38069 5.46025 5.77053 6.11010 6.36052 6.48708 7.17203 7.47954 8.04100 8.69977 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.003308 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.761812 B = 8462.852676 C = 9122.674820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.103 0.897 4 C -0.108 4.108 5 C 0.443 3.557 6 O -0.617 6.617 7 N -0.466 5.466 8 C 0.121 3.879 9 C -0.344 4.344 10 H 0.074 0.926 11 C -0.005 4.005 12 N -0.899 5.899 13 Si 0.990 3.010 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.274 1.274 17 C 0.414 3.586 18 O -0.468 6.468 19 C -0.151 4.151 20 C -0.076 4.076 21 C -0.093 4.093 22 C -0.113 4.113 23 C 0.071 3.929 24 F -0.145 7.145 25 C -0.114 4.114 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.273 0.727 35 H 0.146 0.854 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 1.159 21.112 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 H 0.121 0.879 4 C -0.148 4.148 5 C 0.232 3.768 6 O -0.504 6.504 7 N -0.185 5.185 8 C -0.022 4.022 9 C -0.472 4.472 10 H 0.092 0.908 11 C -0.206 4.206 12 N -0.538 5.538 13 Si 0.814 3.186 14 H -0.191 1.191 15 H -0.200 1.200 16 H -0.199 1.199 17 C 0.292 3.708 18 O -0.344 6.344 19 C -0.152 4.152 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.132 4.132 23 C 0.052 3.948 24 F -0.123 7.123 25 C -0.132 4.132 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.164 0.836 36 H 0.194 0.806 37 H 0.186 0.814 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.828 0.909 20.956 21.322 hybrid contribution -0.310 0.611 -1.353 1.517 sum 3.518 1.520 19.603 19.974 Atomic orbital electron populations 1.21728 0.91801 1.02223 1.03641 1.21293 0.98868 1.01234 0.91802 0.87869 1.21355 1.02519 0.99566 0.91321 1.20798 0.82996 0.87698 0.85259 1.90434 1.45396 1.27758 1.86824 1.43850 1.47200 1.22499 1.04920 1.21403 0.94603 0.85731 1.00445 1.19645 1.47463 0.93327 0.86748 0.90761 1.26119 0.95547 0.96770 1.02165 1.70079 1.48176 1.08187 1.27322 0.84980 0.78705 0.77918 0.77022 1.19076 1.20017 1.19901 1.22532 0.72017 0.87343 0.88863 1.90495 1.39146 1.17942 1.86863 1.20229 1.05277 0.94110 0.95630 1.21737 0.94796 1.01362 0.91496 1.21397 0.98011 0.92986 0.98623 1.21789 0.97345 0.95898 0.98140 1.17791 1.02954 0.78595 0.95478 1.91515 1.90791 1.32992 1.97040 1.21596 0.99376 0.94090 0.98187 0.91665 0.92778 0.90437 0.88845 0.89257 0.94088 0.92334 0.91938 0.91774 0.83610 0.80594 0.81416 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.92 71.98 0.64 -3.73 16 2 C -0.11 -3.60 1.67 -11.54 -0.02 -3.62 16 3 H 0.10 3.28 6.54 -2.39 -0.02 3.27 16 4 C -0.11 -4.02 3.23 29.85 0.10 -3.93 16 5 C 0.44 21.60 7.34 87.66 0.64 22.24 16 6 O -0.62 -33.33 13.68 -3.05 -0.04 -33.38 16 7 N -0.47 -24.52 3.01 -658.90 -1.98 -26.50 16 8 C 0.12 5.56 8.44 127.77 1.08 6.64 16 9 C -0.34 -19.76 9.24 84.04 0.78 -18.99 16 10 H 0.07 4.51 7.45 -2.91 -0.02 4.49 16 11 C 0.00 -0.24 5.04 84.93 0.43 0.19 16 12 N -0.90 -48.68 10.83 21.66 0.23 -48.44 16 13 Si 0.99 42.94 29.57 68.60 2.03 44.97 16 14 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 15 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 C 0.41 11.60 6.23 28.03 0.17 11.77 16 18 O -0.47 -14.91 16.19 -2.95 -0.05 -14.96 16 19 C -0.15 -3.42 5.87 -20.16 -0.12 -3.54 16 20 C -0.08 -1.32 9.60 22.58 0.22 -1.11 16 21 C -0.09 -1.08 10.03 22.22 0.22 -0.85 16 22 C -0.11 -1.48 10.02 22.39 0.22 -1.25 16 23 C 0.07 1.36 7.29 22.33 0.16 1.52 16 24 F -0.14 -3.11 17.26 44.97 0.78 -2.33 16 25 C -0.11 -2.47 9.35 22.63 0.21 -2.26 16 26 H 0.06 2.56 5.95 -2.39 -0.01 2.55 16 27 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.09 3.18 7.41 -2.39 -0.02 3.16 16 30 H 0.09 3.33 8.00 -2.39 -0.02 3.31 16 31 H 0.04 1.94 7.82 -2.39 -0.02 1.92 16 32 H 0.06 2.82 6.80 -2.38 -0.02 2.81 16 33 H 0.06 2.35 6.61 -2.39 -0.02 2.34 16 34 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.15 2.39 7.65 -2.91 -0.02 2.37 16 36 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.14 3.23 6.47 -2.91 -0.02 3.21 16 Total: -1.00 -68.61 325.52 6.79 -61.82 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.08 Total: 15.72 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 4.74 Total: 3.09 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.75 Total: -74.94 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.09 Total: -48.33 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -68.61 6.79 -61.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073207569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.386 kcal (2) G-P(sol) polarization free energy of solvation -68.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds