Wall clock time and date at job start Tue Mar 31 2020 07:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.76794 * 2 1 4 4 C 1.53420 * 109.82032 * 239.23147 * 2 1 3 5 5 N 1.46757 * 108.59845 * 177.13404 * 4 2 1 6 6 C 1.46906 * 110.99631 * 285.47283 * 5 4 2 7 7 C 1.52997 * 109.46848 * 191.46195 * 6 5 4 8 8 C 1.53006 * 109.46931 * 179.97438 * 7 6 5 9 9 S 1.81005 * 109.46998 * 180.02562 * 8 7 6 10 10 C 1.76192 * 99.99933 * 180.02562 * 9 8 7 11 11 H 1.08009 * 120.00256 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00268 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00448 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99703 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47136 * 90.00491 * 14 12 10 16 16 H 1.48510 * 109.46894 * 210.00223 * 14 12 10 17 17 H 1.48501 * 109.46913 * 330.00052 * 14 12 10 18 18 C 1.39847 * 112.12911 * 50.25622 * 5 4 2 19 19 C 1.39143 * 118.60318 * 159.97940 * 18 5 4 20 20 C 1.38070 * 120.24216 * 179.79387 * 19 18 5 21 21 C 1.38256 * 120.11355 * 0.02562 * 20 19 18 22 22 C 1.38174 * 120.03341 * 0.02976 * 21 20 19 23 23 C 1.38778 * 120.20441 * 0.03444 * 22 21 20 24 24 O 1.36142 * 118.74922 * 179.54148 * 23 22 21 25 25 H 1.09003 * 109.47085 * 299.25279 * 1 2 3 26 26 H 1.09004 * 109.47282 * 59.24720 * 1 2 3 27 27 H 1.09002 * 109.47735 * 179.24842 * 1 2 3 28 28 H 1.08999 * 109.61720 * 57.39189 * 4 2 1 29 29 H 1.09000 * 109.61628 * 296.86151 * 4 2 1 30 30 H 1.08998 * 109.47121 * 311.46028 * 6 5 4 31 31 H 1.09000 * 109.47141 * 71.46226 * 6 5 4 32 32 H 1.08998 * 109.47584 * 300.00097 * 7 6 5 33 33 H 1.09005 * 109.46901 * 60.00396 * 7 6 5 34 34 H 1.08998 * 109.47207 * 299.99936 * 8 7 6 35 35 H 1.09000 * 109.46973 * 60.00084 * 8 7 6 36 36 H 0.96996 * 120.00480 * 179.97438 * 13 12 10 37 37 H 1.07999 * 119.87972 * 359.81666 * 19 18 5 38 38 H 1.07991 * 119.94201 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.97946 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.89972 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0258 0.0000 4 6 2.0502 -0.7384 -1.2402 5 7 3.5158 -0.6629 -1.2494 6 6 3.9713 0.6792 -1.6360 7 6 5.4758 0.6471 -1.9121 8 6 5.9502 2.0448 -2.3154 9 16 7.7300 2.0067 -2.6428 10 6 7.9984 3.6944 -3.0715 11 1 7.1718 4.3897 -3.0716 12 6 9.2718 4.1305 -3.4101 13 7 9.4723 5.3913 -3.7309 14 14 10.7013 2.9280 -3.4105 15 1 10.8262 2.3080 -4.7541 16 1 11.9561 3.6505 -3.0802 17 1 10.4582 1.8697 -2.3976 18 6 4.0708 -1.0471 -0.0246 19 6 5.4068 -1.4341 0.0092 20 6 5.9903 -1.8158 1.2010 21 6 5.2487 -1.8157 2.3678 22 6 3.9210 -1.4339 2.3433 23 6 3.3268 -1.0502 1.1493 24 8 2.0143 -0.6887 1.1575 25 1 -0.3633 0.5022 0.8966 26 1 -0.3634 0.5255 -0.8832 27 1 -0.3634 -1.0276 -0.0135 28 1 1.6538 -0.2673 -2.1396 29 1 1.7378 -1.7820 -1.2025 30 1 3.4436 0.9970 -2.5352 31 1 3.7653 1.3799 -0.8269 32 1 6.0037 0.3293 -1.0129 33 1 5.6819 -0.0536 -2.7212 34 1 5.4225 2.3621 -3.2147 35 1 5.7441 2.7458 -1.5066 36 1 10.3623 5.6961 -3.9671 37 1 5.9897 -1.4357 -0.9000 38 1 7.0278 -2.1149 1.2217 39 1 5.7074 -2.1143 3.2988 40 1 3.3438 -1.4342 3.2561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:33 Heat of formation + Delta-G solvation = -12.723879 kcal Electronic energy + Delta-G solvation = -21058.768549 eV Core-core repulsion = 17964.669138 eV Total energy + Delta-G solvation = -3094.099411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38114 -37.78267 -37.06914 -33.37455 -32.46905 -32.42572 -30.52888 -28.87207 -26.96038 -25.67851 -24.58321 -23.32522 -22.53517 -21.58418 -19.86930 -18.23565 -17.45603 -16.98265 -16.44421 -15.62768 -15.35849 -15.07860 -14.94129 -14.48402 -14.34681 -13.95030 -13.65677 -13.46712 -12.99488 -12.90623 -12.81642 -12.52647 -12.21588 -12.11353 -11.84528 -11.68656 -11.58649 -11.24481 -11.05610 -11.04744 -10.75362 -10.45673 -10.20777 -9.81303 -9.38685 -9.01229 -8.57914 -8.40657 -8.00596 -6.95077 -6.29148 -4.01506 1.24614 1.37263 2.96376 3.01212 3.29592 3.41622 3.45150 3.62332 3.74921 4.22201 4.31015 4.60706 4.62260 4.69623 4.77704 4.89457 5.00338 5.09512 5.11502 5.16301 5.24922 5.31902 5.34979 5.40152 5.46414 5.50970 5.55381 5.70567 5.75515 5.79596 5.92378 6.14136 6.16836 6.21744 6.41186 6.48584 6.54532 6.62979 6.80845 6.96017 7.36994 7.94552 8.43210 9.16739 10.80396 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.003752 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.104933 B = 7461.104822 C = 8324.211263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 H 0.074 0.926 4 C 0.023 3.977 5 N -0.488 5.488 6 C 0.060 3.940 7 C -0.108 4.108 8 C -0.082 4.082 9 S -0.211 6.211 10 C -0.503 4.503 11 H 0.087 0.913 12 C 0.092 3.908 13 N -0.882 5.882 14 Si 0.861 3.139 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.237 1.237 18 C 0.029 3.971 19 C -0.081 4.081 20 C -0.139 4.139 21 C -0.099 4.099 22 C -0.138 4.138 23 C 0.086 3.914 24 O -0.310 6.310 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.270 0.730 37 H 0.138 0.862 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 -14.600 9.268 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.012 4.012 3 H 0.092 0.908 4 C -0.105 4.105 5 N -0.204 5.204 6 C -0.067 4.067 7 C -0.146 4.146 8 C -0.231 4.231 9 S 0.017 5.983 10 C -0.651 4.651 11 H 0.105 0.895 12 C -0.116 4.116 13 N -0.519 5.519 14 Si 0.686 3.314 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.161 1.161 18 C -0.067 4.067 19 C -0.100 4.100 20 C -0.157 4.157 21 C -0.118 4.118 22 C -0.157 4.157 23 C 0.039 3.961 24 O -0.225 6.225 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.156 0.844 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.732 -15.631 8.989 23.285 hybrid contribution -0.349 1.445 0.142 1.494 sum -15.081 -14.186 9.130 22.628 Atomic orbital electron populations 1.21731 0.91559 1.03406 1.03200 1.23112 0.96388 0.95673 0.86032 0.90787 1.23015 0.86816 1.02419 0.98223 1.59242 1.07844 1.27006 1.26301 1.22364 0.97632 0.86424 1.00259 1.21682 0.93120 0.96912 1.02933 1.23000 0.98909 0.98251 1.02949 1.84129 1.05719 1.18318 1.90175 1.22125 0.98869 0.91247 1.52821 0.89468 1.24790 0.98291 0.95128 0.93399 1.69936 1.23113 1.14609 1.44242 0.86675 0.81965 0.82217 0.80526 1.19343 1.20095 1.16127 1.18724 0.95083 1.05642 0.87297 1.21128 0.93002 0.96784 0.99125 1.21022 1.00351 1.02020 0.92335 1.20921 0.93001 0.99357 0.98526 1.20403 0.95218 1.04487 0.95641 1.19021 0.84311 0.99399 0.93360 1.86266 1.22364 1.72455 1.41384 0.91368 0.90195 0.91387 0.88319 0.89002 0.89819 0.94185 0.90270 0.90468 0.91425 0.91607 0.91968 0.84388 0.85453 0.85495 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.60 37.16 0.36 -0.65 16 2 C 0.05 0.46 3.44 -26.51 -0.09 0.37 16 3 H 0.07 0.79 6.94 -51.93 -0.36 0.43 16 4 C 0.02 0.23 5.33 -3.68 -0.02 0.21 16 5 N -0.49 -6.13 4.66 -170.82 -0.80 -6.93 16 6 C 0.06 0.78 4.58 -3.82 -0.02 0.76 16 7 C -0.11 -1.68 4.17 -26.73 -0.11 -1.79 16 8 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 9 S -0.21 -5.13 19.41 -107.50 -2.09 -7.21 16 10 C -0.50 -14.61 10.04 30.94 0.31 -14.30 16 11 H 0.09 2.70 8.03 -52.48 -0.42 2.27 16 12 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 13 N -0.88 -26.80 13.97 55.49 0.78 -26.03 16 14 Si 0.86 21.52 27.74 -169.99 -4.71 16.81 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 18 C 0.03 0.39 5.06 -83.59 -0.42 -0.03 16 19 C -0.08 -1.07 7.61 -39.31 -0.30 -1.37 16 20 C -0.14 -1.63 10.03 -39.64 -0.40 -2.02 16 21 C -0.10 -1.08 10.04 -39.60 -0.40 -1.48 16 22 C -0.14 -1.65 9.94 -39.41 -0.39 -2.04 16 23 C 0.09 1.15 6.47 -39.11 -0.25 0.90 16 24 O -0.31 -3.93 10.06 -20.19 -0.20 -4.13 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.79 7.82 -51.93 -0.41 0.39 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 31 H 0.04 0.54 7.11 -51.93 -0.37 0.17 16 32 H 0.08 1.27 5.12 -51.93 -0.27 1.00 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 36 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 37 H 0.14 1.84 6.37 -52.49 -0.33 1.50 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -31.95 332.98 -9.57 -41.53 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.95 Total: 1.16 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -1.62 Total: -20.22 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: -0.02 Total: -32.96 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.20 Total: -4.13 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.09 Total: -7.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.95 -9.57 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.803 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds