Wall clock time and date at job start Tue Mar 31 2020 07:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.76794 * 2 1 4 4 C 1.53420 * 109.82032 * 239.23147 * 2 1 3 5 5 N 1.46757 * 108.59845 * 177.13404 * 4 2 1 6 6 C 1.46906 * 110.99631 * 285.47283 * 5 4 2 7 7 C 1.52997 * 109.46848 * 191.46195 * 6 5 4 8 8 C 1.53006 * 109.46931 * 179.97438 * 7 6 5 9 9 S 1.81005 * 109.46998 * 180.02562 * 8 7 6 10 10 C 1.76192 * 99.99933 * 180.02562 * 9 8 7 11 11 H 1.08009 * 120.00256 * 359.97438 * 10 9 8 12 12 C 1.38796 * 120.00268 * 180.02562 * 10 9 8 13 13 N 1.31634 * 120.00448 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99703 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47136 * 90.00491 * 14 12 10 16 16 H 1.48510 * 109.46894 * 210.00223 * 14 12 10 17 17 H 1.48501 * 109.46913 * 330.00052 * 14 12 10 18 18 C 1.39847 * 112.12911 * 50.25622 * 5 4 2 19 19 C 1.39143 * 118.60318 * 159.97940 * 18 5 4 20 20 C 1.38070 * 120.24216 * 179.79387 * 19 18 5 21 21 C 1.38256 * 120.11355 * 0.02562 * 20 19 18 22 22 C 1.38174 * 120.03341 * 0.02976 * 21 20 19 23 23 C 1.38778 * 120.20441 * 0.03444 * 22 21 20 24 24 O 1.36142 * 118.74922 * 179.54148 * 23 22 21 25 25 H 1.09003 * 109.47085 * 299.25279 * 1 2 3 26 26 H 1.09004 * 109.47282 * 59.24720 * 1 2 3 27 27 H 1.09002 * 109.47735 * 179.24842 * 1 2 3 28 28 H 1.08999 * 109.61720 * 57.39189 * 4 2 1 29 29 H 1.09000 * 109.61628 * 296.86151 * 4 2 1 30 30 H 1.08998 * 109.47121 * 311.46028 * 6 5 4 31 31 H 1.09000 * 109.47141 * 71.46226 * 6 5 4 32 32 H 1.08998 * 109.47584 * 300.00097 * 7 6 5 33 33 H 1.09005 * 109.46901 * 60.00396 * 7 6 5 34 34 H 1.08998 * 109.47207 * 299.99936 * 8 7 6 35 35 H 1.09000 * 109.46973 * 60.00084 * 8 7 6 36 36 H 0.96996 * 120.00480 * 179.97438 * 13 12 10 37 37 H 1.07999 * 119.87972 * 359.81666 * 19 18 5 38 38 H 1.07991 * 119.94201 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.97946 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.89972 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8986 1.0258 0.0000 4 6 2.0502 -0.7384 -1.2402 5 7 3.5158 -0.6629 -1.2494 6 6 3.9713 0.6792 -1.6360 7 6 5.4758 0.6471 -1.9121 8 6 5.9502 2.0448 -2.3154 9 16 7.7300 2.0067 -2.6428 10 6 7.9984 3.6944 -3.0715 11 1 7.1718 4.3897 -3.0716 12 6 9.2718 4.1305 -3.4101 13 7 9.4723 5.3913 -3.7309 14 14 10.7013 2.9280 -3.4105 15 1 10.8262 2.3080 -4.7541 16 1 11.9561 3.6505 -3.0802 17 1 10.4582 1.8697 -2.3976 18 6 4.0708 -1.0471 -0.0246 19 6 5.4068 -1.4341 0.0092 20 6 5.9903 -1.8158 1.2010 21 6 5.2487 -1.8157 2.3678 22 6 3.9210 -1.4339 2.3433 23 6 3.3268 -1.0502 1.1493 24 8 2.0143 -0.6887 1.1575 25 1 -0.3633 0.5022 0.8966 26 1 -0.3634 0.5255 -0.8832 27 1 -0.3634 -1.0276 -0.0135 28 1 1.6538 -0.2673 -2.1396 29 1 1.7378 -1.7820 -1.2025 30 1 3.4436 0.9970 -2.5352 31 1 3.7653 1.3799 -0.8269 32 1 6.0037 0.3293 -1.0129 33 1 5.6819 -0.0536 -2.7212 34 1 5.4225 2.3621 -3.2147 35 1 5.7441 2.7458 -1.5066 36 1 10.3623 5.6961 -3.9671 37 1 5.9897 -1.4357 -0.9000 38 1 7.0278 -2.1149 1.2217 39 1 5.7074 -2.1143 3.2988 40 1 3.3438 -1.4342 3.2561 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:32 Heat of formation + Delta-G solvation = -31.821018 kcal Electronic energy + Delta-G solvation = -21059.596663 eV Core-core repulsion = 17964.669138 eV Total energy + Delta-G solvation = -3094.927526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27427 -38.65677 -38.04467 -34.69975 -34.51651 -33.32003 -31.43576 -29.76268 -28.20855 -27.71118 -25.58555 -24.15795 -23.47709 -22.79934 -20.76763 -19.66054 -19.07387 -17.89788 -17.33332 -17.11642 -16.64662 -16.55321 -16.02675 -15.67984 -15.44500 -15.11330 -14.92732 -14.57921 -14.56074 -13.79723 -13.72745 -13.63666 -13.43085 -13.15152 -13.04813 -13.01329 -12.75925 -12.68093 -12.48763 -12.10425 -11.92453 -11.78578 -11.68212 -11.62467 -11.16783 -10.58710 -10.31147 -9.33479 -8.99565 -8.93852 -8.52516 -6.23828 0.32672 0.44142 1.11573 1.32130 1.47639 1.71789 2.18827 2.24567 2.54935 2.68606 2.83224 2.85728 3.44441 3.77658 3.82956 3.83393 3.96073 4.08209 4.17705 4.21618 4.24185 4.35581 4.40321 4.50462 4.54506 4.61801 4.68321 4.70994 4.77223 4.88065 5.02629 5.06278 5.15619 5.16546 5.26777 5.32323 5.58703 5.68605 5.69693 5.89118 6.04821 6.09162 6.45686 6.91575 8.60688 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.003752 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.104933 B = 7461.104822 C = 8324.211263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.041 3.959 3 H 0.065 0.935 4 C 0.024 3.976 5 N -0.493 5.493 6 C 0.069 3.931 7 C -0.095 4.095 8 C -0.069 4.069 9 S -0.213 6.213 10 C -0.524 4.524 11 H 0.049 0.951 12 C 0.039 3.961 13 N -0.923 5.923 14 Si 0.925 3.075 15 H -0.260 1.260 16 H -0.263 1.263 17 H -0.228 1.228 18 C 0.013 3.987 19 C -0.098 4.098 20 C -0.145 4.145 21 C -0.096 4.096 22 C -0.148 4.148 23 C 0.069 3.931 24 O -0.323 6.323 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.277 0.723 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.001 -16.404 9.843 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.016 4.016 3 H 0.083 0.917 4 C -0.104 4.104 5 N -0.210 5.210 6 C -0.058 4.058 7 C -0.134 4.134 8 C -0.218 4.218 9 S 0.015 5.985 10 C -0.672 4.672 11 H 0.068 0.932 12 C -0.166 4.166 13 N -0.561 5.561 14 Si 0.746 3.254 15 H -0.185 1.185 16 H -0.188 1.188 17 H -0.151 1.151 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.167 4.167 23 C 0.022 3.978 24 O -0.238 6.238 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.139 0.861 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.174 0.826 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.143 -17.437 9.567 24.998 hybrid contribution -0.352 2.027 0.009 2.057 sum -15.495 -15.410 9.576 23.859 Atomic orbital electron populations 1.21750 0.89295 1.04034 1.04209 1.23310 0.98076 0.94880 0.85349 0.91716 1.23125 0.85272 1.02794 0.99180 1.59215 1.09393 1.26202 1.26179 1.22209 0.95772 0.87010 1.00808 1.21553 0.94995 0.94108 1.02701 1.23041 0.95176 1.00709 1.02885 1.83811 1.10240 1.14367 1.90053 1.22355 0.98170 0.93617 1.53053 0.93234 1.25773 1.01106 0.96947 0.92762 1.70037 1.24257 1.16631 1.45174 0.85723 0.78559 0.80070 0.81066 1.18498 1.18758 1.15140 1.18872 0.95379 1.06307 0.87801 1.21232 0.93178 0.97783 0.99580 1.21308 1.01293 1.01558 0.92186 1.21268 0.92579 0.98120 0.99419 1.20732 0.95896 1.04166 0.95861 1.19287 0.84742 0.99930 0.93851 1.86256 1.22128 1.72700 1.42677 0.91450 0.88058 0.90952 0.86066 0.88889 0.88141 0.94816 0.90610 0.90252 0.91185 0.92190 0.91386 0.85012 0.83798 0.82620 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.60 71.98 0.69 -0.97 16 2 C 0.04 0.78 3.44 30.73 0.11 0.88 16 3 H 0.06 1.33 6.94 -2.39 -0.02 1.31 16 4 C 0.02 0.43 5.33 86.47 0.46 0.89 16 5 N -0.49 -11.77 4.66 -694.35 -3.24 -15.01 16 6 C 0.07 1.71 4.58 86.30 0.39 2.10 16 7 C -0.09 -2.85 4.17 30.60 0.13 -2.72 16 8 C -0.07 -2.64 5.67 71.98 0.41 -2.23 16 9 S -0.21 -10.23 19.41 -56.49 -1.10 -11.32 16 10 C -0.52 -31.07 10.04 67.95 0.68 -30.39 16 11 H 0.05 3.19 8.03 -2.91 -0.02 3.17 16 12 C 0.04 2.29 5.50 84.86 0.47 2.75 16 13 N -0.92 -57.02 13.97 21.65 0.30 -56.72 16 14 Si 0.92 44.09 27.74 68.60 1.90 45.99 16 15 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.23 -10.45 6.74 99.48 0.67 -9.78 16 18 C 0.01 0.34 5.06 38.26 0.19 0.53 16 19 C -0.10 -2.52 7.61 22.45 0.17 -2.35 16 20 C -0.14 -3.19 10.03 22.23 0.22 -2.97 16 21 C -0.10 -1.89 10.04 22.26 0.22 -1.67 16 22 C -0.15 -3.31 9.94 22.38 0.22 -3.09 16 23 C 0.07 1.78 6.47 22.58 0.15 1.93 16 24 O -0.32 -7.88 10.06 -95.16 -0.96 -8.84 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.12 1.62 7.82 -2.39 -0.02 1.61 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.14 7.84 -2.39 -0.02 2.12 16 31 H 0.03 0.88 7.11 -2.39 -0.02 0.86 16 32 H 0.08 2.36 5.12 -2.39 -0.01 2.35 16 33 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.28 15.74 8.31 -92.71 -0.77 14.96 16 37 H 0.13 3.44 6.37 -2.91 -0.02 3.42 16 38 H 0.14 2.58 8.06 -2.92 -0.02 2.56 16 39 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -69.39 332.98 2.41 -66.97 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.98 Total: 16.23 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 4.52 Total: -37.30 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -2.93 Total: -71.73 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.96 Total: -8.84 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 45.99 kcal Atomic # 16 Polarization: -10.23 SS G_CDS: -1.10 Total: -11.32 kcal Total: -69.39 2.41 -66.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.153 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds