Wall clock time and date at job start Tue Mar 31 2020 07:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.77360 * 2 1 4 4 C 1.53417 * 109.77144 * 120.74756 * 2 1 3 5 5 N 1.46754 * 108.61110 * 182.86872 * 4 2 1 6 6 C 1.46907 * 110.99923 * 74.51809 * 5 4 2 7 7 C 1.53008 * 109.46918 * 168.54315 * 6 5 4 8 8 C 1.52995 * 109.46687 * 179.97438 * 7 6 5 9 9 S 1.81004 * 109.46939 * 179.97438 * 8 7 6 10 10 C 1.76197 * 99.99935 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00566 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99758 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00200 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99974 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47139 * 60.00173 * 14 12 10 16 16 H 1.48500 * 109.47462 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46941 * 300.00325 * 14 12 10 18 18 C 1.39855 * 112.12748 * 309.74050 * 5 4 2 19 19 C 1.39135 * 118.60337 * 199.99849 * 18 5 4 20 20 C 1.38068 * 120.24373 * 180.28858 * 19 18 5 21 21 C 1.38256 * 120.11419 * 0.05484 * 20 19 18 22 22 C 1.38185 * 120.03088 * 359.89057 * 21 20 19 23 23 C 1.38782 * 120.19966 * 359.97438 * 22 21 20 24 24 O 1.36145 * 118.74295 * 180.49863 * 23 22 21 25 25 H 1.08999 * 109.47336 * 299.25963 * 1 2 3 26 26 H 1.09006 * 109.46642 * 59.25855 * 1 2 3 27 27 H 1.08992 * 109.47705 * 179.25247 * 1 2 3 28 28 H 1.08998 * 109.61720 * 63.13321 * 4 2 1 29 29 H 1.09003 * 109.76107 * 302.68923 * 4 2 1 30 30 H 1.08996 * 109.47082 * 288.53918 * 6 5 4 31 31 H 1.08997 * 109.47274 * 48.54581 * 6 5 4 32 32 H 1.09003 * 109.46670 * 300.00017 * 7 6 5 33 33 H 1.08997 * 109.46931 * 60.00055 * 7 6 5 34 34 H 1.08989 * 109.47554 * 299.99729 * 8 7 6 35 35 H 1.08997 * 109.47386 * 60.00338 * 8 7 6 36 36 H 0.96999 * 120.00615 * 179.97438 * 13 12 10 37 37 H 1.08007 * 119.87910 * 0.31144 * 19 18 5 38 38 H 1.07999 * 119.94554 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.98805 * 179.86915 * 21 20 19 40 40 H 1.07991 * 119.89977 * 179.70098 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8987 1.0257 0.0000 4 6 2.0489 -0.7381 1.2408 5 7 3.5145 -0.6634 1.2513 6 6 3.9705 0.6786 1.6377 7 6 5.4748 0.6459 1.9151 8 6 5.9497 2.0437 2.3169 9 16 7.7292 2.0049 2.6459 10 6 7.9983 3.6931 3.0725 11 1 7.1724 4.3888 3.0711 12 6 9.2719 4.1286 3.4116 13 7 10.2786 3.2807 3.4139 14 14 9.5572 5.9182 3.8647 15 1 8.7317 6.2667 5.0489 16 1 10.9928 6.1256 4.1830 17 1 9.1738 6.7853 2.7216 18 6 4.0704 -1.0484 0.0271 19 6 5.4064 -1.4357 -0.0054 20 6 5.9913 -1.8165 -1.1966 21 6 5.2516 -1.8137 -2.3647 22 6 3.9238 -1.4316 -2.3414 23 6 3.3279 -1.0501 -1.1475 24 8 2.0152 -0.6891 -1.1570 25 1 -0.3634 0.5023 0.8965 26 1 -0.3633 0.5253 -0.8833 27 1 -0.3634 -1.0275 -0.0134 28 1 1.7361 -1.7816 1.2034 29 1 1.6522 -0.2692 2.1413 30 1 3.7655 1.3790 0.8281 31 1 3.4422 0.9971 2.5363 32 1 5.6797 -0.0546 2.7247 33 1 6.0031 0.3273 1.0166 34 1 5.7448 2.7438 1.5071 35 1 5.4215 2.3626 3.2154 36 1 11.1687 3.5851 3.6505 37 1 5.9880 -1.4388 0.9047 38 1 7.0285 -2.1166 -1.2163 39 1 5.7117 -2.1099 -3.2957 40 1 3.3493 -1.4255 -3.2558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:37 Heat of formation + Delta-G solvation = -13.050994 kcal Electronic energy + Delta-G solvation = -21007.968769 eV Core-core repulsion = 17913.855173 eV Total energy + Delta-G solvation = -3094.113596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32624 -37.72749 -37.00130 -33.28567 -32.46242 -32.34368 -30.46681 -28.81466 -26.88894 -25.56213 -24.48068 -23.27453 -22.47369 -21.47202 -19.81254 -18.18204 -17.44200 -16.92300 -16.39036 -15.57425 -15.26642 -14.99151 -14.80328 -14.41806 -14.26447 -13.94424 -13.63341 -13.40946 -12.96947 -12.91130 -12.75571 -12.45609 -12.12269 -11.87261 -11.76449 -11.56481 -11.44886 -11.05081 -11.03694 -10.99458 -10.67641 -10.59748 -10.34912 -9.62648 -9.30263 -9.05151 -8.35267 -8.30802 -7.94737 -6.52725 -6.22728 -3.92996 1.30699 1.43294 3.03923 3.20392 3.22990 3.27533 3.42655 3.66272 3.81004 4.22336 4.26562 4.64430 4.66100 4.75187 4.92074 5.06285 5.13144 5.15441 5.21514 5.27958 5.35100 5.39897 5.43708 5.47214 5.53511 5.58112 5.63965 5.73483 5.85694 5.90257 6.01556 6.22680 6.24098 6.32146 6.51959 6.56690 6.63496 6.72191 6.88207 7.01704 7.42493 7.60057 8.36190 9.23401 10.85404 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003529 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.772495 B = 7933.138617 C = 8728.476751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 H 0.074 0.926 4 C 0.023 3.977 5 N -0.488 5.488 6 C 0.060 3.940 7 C -0.104 4.104 8 C -0.113 4.113 9 S -0.128 6.128 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.029 3.971 19 C -0.080 4.080 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.139 4.139 23 C 0.085 3.915 24 O -0.311 6.311 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.268 0.732 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.007 -9.493 -8.286 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.012 4.012 3 H 0.092 0.908 4 C -0.105 4.105 5 N -0.204 5.204 6 C -0.066 4.066 7 C -0.143 4.143 8 C -0.262 4.262 9 S 0.100 5.900 10 C -0.666 4.666 11 H 0.089 0.911 12 C -0.137 4.137 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.067 4.067 19 C -0.099 4.099 20 C -0.156 4.156 21 C -0.119 4.119 22 C -0.158 4.158 23 C 0.038 3.962 24 O -0.225 6.225 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.058 -10.703 -8.028 20.902 hybrid contribution -0.886 2.802 0.021 2.939 sum -16.944 -7.902 -8.007 20.338 Atomic orbital electron populations 1.21727 0.91615 1.03413 1.03117 1.23094 0.96324 0.95660 0.86114 0.90845 1.23007 0.86947 1.02395 0.98143 1.59251 1.07694 1.27088 1.26354 1.22387 0.97951 0.86273 1.00035 1.21622 0.92733 0.97088 1.02835 1.23219 1.02759 0.97958 1.02251 1.84601 0.99913 1.16317 1.89140 1.22651 0.97041 0.93658 1.53280 0.91063 1.25001 0.95047 0.98709 0.94937 1.70006 1.00301 1.34616 1.45580 0.86236 0.77358 0.82982 0.79024 1.19937 1.20789 1.19957 1.18727 0.95110 1.05615 0.87278 1.21149 0.92957 0.96583 0.99216 1.21037 1.00395 1.01916 0.92302 1.20923 0.92989 0.99413 0.98526 1.20393 0.95216 1.04614 0.95595 1.19017 0.84287 0.99517 0.93383 1.86263 1.22400 1.72477 1.41372 0.90234 0.91429 0.91373 0.89055 0.88389 0.94369 0.90000 0.90566 0.90373 0.92380 0.92160 0.92239 0.84273 0.85372 0.85510 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.60 37.16 0.36 -0.69 16 2 C 0.05 0.48 3.44 -26.52 -0.09 0.39 16 3 H 0.07 0.82 6.94 -51.93 -0.36 0.46 16 4 C 0.02 0.24 5.32 -3.69 -0.02 0.22 16 5 N -0.49 -6.45 4.66 -170.82 -0.80 -7.24 16 6 C 0.06 0.83 4.58 -3.82 -0.02 0.81 16 7 C -0.10 -1.73 4.17 -26.73 -0.11 -1.84 16 8 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 9 S -0.13 -3.34 21.44 -107.50 -2.30 -5.65 16 10 C -0.52 -14.90 9.50 30.94 0.29 -14.61 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 13 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 14 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.03 0.41 5.06 -83.59 -0.42 -0.01 16 19 C -0.08 -1.11 7.61 -39.31 -0.30 -1.41 16 20 C -0.14 -1.71 10.03 -39.64 -0.40 -2.11 16 21 C -0.10 -1.14 10.04 -39.59 -0.40 -1.54 16 22 C -0.14 -1.72 9.94 -39.40 -0.39 -2.11 16 23 C 0.09 1.18 6.47 -39.11 -0.25 0.92 16 24 O -0.31 -4.06 10.06 -20.20 -0.20 -4.26 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 0.83 7.82 -51.93 -0.41 0.43 16 30 H 0.04 0.54 7.11 -51.93 -0.37 0.17 16 31 H 0.08 1.02 7.84 -51.93 -0.41 0.61 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.34 5.12 -51.93 -0.27 1.07 16 34 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.14 1.98 6.37 -52.48 -0.33 1.65 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -32.01 335.67 -10.09 -42.09 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.92 Total: 0.82 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -1.64 Total: -22.09 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: -0.06 Total: -32.50 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.20 Total: -4.26 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.30 Total: -5.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.01 -10.09 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.043 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds