Wall clock time and date at job start Tue Mar 31 2020 07:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.77360 * 2 1 4 4 C 1.53417 * 109.77144 * 120.74756 * 2 1 3 5 5 N 1.46754 * 108.61110 * 182.86872 * 4 2 1 6 6 C 1.46907 * 110.99923 * 74.51809 * 5 4 2 7 7 C 1.53008 * 109.46918 * 168.54315 * 6 5 4 8 8 C 1.52995 * 109.46687 * 179.97438 * 7 6 5 9 9 S 1.81004 * 109.46939 * 179.97438 * 8 7 6 10 10 C 1.76197 * 99.99935 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00566 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99758 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00200 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99974 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47139 * 60.00173 * 14 12 10 16 16 H 1.48500 * 109.47462 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46941 * 300.00325 * 14 12 10 18 18 C 1.39855 * 112.12748 * 309.74050 * 5 4 2 19 19 C 1.39135 * 118.60337 * 199.99849 * 18 5 4 20 20 C 1.38068 * 120.24373 * 180.28858 * 19 18 5 21 21 C 1.38256 * 120.11419 * 0.05484 * 20 19 18 22 22 C 1.38185 * 120.03088 * 359.89057 * 21 20 19 23 23 C 1.38782 * 120.19966 * 359.97438 * 22 21 20 24 24 O 1.36145 * 118.74295 * 180.49863 * 23 22 21 25 25 H 1.08999 * 109.47336 * 299.25963 * 1 2 3 26 26 H 1.09006 * 109.46642 * 59.25855 * 1 2 3 27 27 H 1.08992 * 109.47705 * 179.25247 * 1 2 3 28 28 H 1.08998 * 109.61720 * 63.13321 * 4 2 1 29 29 H 1.09003 * 109.76107 * 302.68923 * 4 2 1 30 30 H 1.08996 * 109.47082 * 288.53918 * 6 5 4 31 31 H 1.08997 * 109.47274 * 48.54581 * 6 5 4 32 32 H 1.09003 * 109.46670 * 300.00017 * 7 6 5 33 33 H 1.08997 * 109.46931 * 60.00055 * 7 6 5 34 34 H 1.08989 * 109.47554 * 299.99729 * 8 7 6 35 35 H 1.08997 * 109.47386 * 60.00338 * 8 7 6 36 36 H 0.96999 * 120.00615 * 179.97438 * 13 12 10 37 37 H 1.08007 * 119.87910 * 0.31144 * 19 18 5 38 38 H 1.07999 * 119.94554 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.98805 * 179.86915 * 21 20 19 40 40 H 1.07991 * 119.89977 * 179.70098 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8987 1.0257 0.0000 4 6 2.0489 -0.7381 1.2408 5 7 3.5145 -0.6634 1.2513 6 6 3.9705 0.6786 1.6377 7 6 5.4748 0.6459 1.9151 8 6 5.9497 2.0437 2.3169 9 16 7.7292 2.0049 2.6459 10 6 7.9983 3.6931 3.0725 11 1 7.1724 4.3888 3.0711 12 6 9.2719 4.1286 3.4116 13 7 10.2786 3.2807 3.4139 14 14 9.5572 5.9182 3.8647 15 1 8.7317 6.2667 5.0489 16 1 10.9928 6.1256 4.1830 17 1 9.1738 6.7853 2.7216 18 6 4.0704 -1.0484 0.0271 19 6 5.4064 -1.4357 -0.0054 20 6 5.9913 -1.8165 -1.1966 21 6 5.2516 -1.8137 -2.3647 22 6 3.9238 -1.4316 -2.3414 23 6 3.3279 -1.0501 -1.1475 24 8 2.0152 -0.6891 -1.1570 25 1 -0.3634 0.5023 0.8965 26 1 -0.3633 0.5253 -0.8833 27 1 -0.3634 -1.0275 -0.0134 28 1 1.7361 -1.7816 1.2034 29 1 1.6522 -0.2692 2.1413 30 1 3.7655 1.3790 0.8281 31 1 3.4422 0.9971 2.5363 32 1 5.6797 -0.0546 2.7247 33 1 6.0031 0.3273 1.0166 34 1 5.7448 2.7438 1.5071 35 1 5.4215 2.3626 3.2154 36 1 11.1687 3.5851 3.6505 37 1 5.9880 -1.4388 0.9047 38 1 7.0285 -2.1166 -1.2163 39 1 5.7117 -2.1099 -3.2957 40 1 3.3493 -1.4255 -3.2558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:36 Heat of formation + Delta-G solvation = -31.717980 kcal Electronic energy + Delta-G solvation = -21008.778230 eV Core-core repulsion = 17913.855173 eV Total energy + Delta-G solvation = -3094.923057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.27286 -38.65642 -38.03545 -34.65026 -34.43922 -33.31001 -31.43738 -29.75860 -28.17503 -27.52863 -25.55490 -24.15014 -23.47771 -22.76475 -20.76783 -19.59995 -19.06719 -17.88875 -17.33166 -16.89730 -16.66312 -16.52290 -16.04826 -15.67731 -15.43848 -15.21592 -14.75247 -14.55975 -14.40924 -13.76734 -13.70556 -13.50624 -13.24926 -13.04168 -13.01893 -12.92775 -12.71287 -12.67173 -12.49092 -12.37564 -11.91710 -11.76959 -11.65083 -11.42548 -11.13703 -10.37567 -10.27312 -9.33528 -8.93838 -8.66673 -8.37406 -6.13714 0.32432 0.43642 1.30718 1.40406 1.47132 1.71661 2.18593 2.27704 2.56129 2.82972 2.96786 3.31147 3.45165 3.78456 3.83289 3.84484 3.97501 4.11431 4.18745 4.23848 4.27280 4.36379 4.41266 4.50417 4.55065 4.63332 4.69683 4.72802 4.78250 4.88583 5.02647 5.08884 5.16205 5.19404 5.27270 5.32407 5.38986 5.58540 5.69546 5.89628 6.04939 6.17444 6.45598 7.04605 8.71752 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003529 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.772495 B = 7933.138617 C = 8728.476751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.042 3.958 3 H 0.066 0.934 4 C 0.023 3.977 5 N -0.495 5.495 6 C 0.071 3.929 7 C -0.092 4.092 8 C -0.087 4.087 9 S -0.190 6.190 10 C -0.542 4.542 11 H 0.072 0.928 12 C 0.017 3.983 13 N -0.907 5.907 14 Si 0.993 3.007 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.265 1.265 18 C 0.013 3.987 19 C -0.099 4.099 20 C -0.146 4.146 21 C -0.095 4.095 22 C -0.146 4.146 23 C 0.070 3.930 24 O -0.322 6.322 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.034 0.966 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.272 0.728 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.157 0.843 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.588 -8.783 -8.590 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 H 0.084 0.916 4 C -0.104 4.104 5 N -0.212 5.212 6 C -0.055 4.055 7 C -0.131 4.131 8 C -0.237 4.237 9 S 0.038 5.962 10 C -0.689 4.689 11 H 0.090 0.910 12 C -0.188 4.188 13 N -0.543 5.543 14 Si 0.814 3.186 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.190 1.190 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.165 4.165 21 C -0.113 4.113 22 C -0.165 4.165 23 C 0.023 3.977 24 O -0.237 6.237 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.140 0.860 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.657 -10.006 -8.335 21.940 hybrid contribution -0.448 2.497 0.061 2.538 sum -18.105 -7.509 -8.274 21.275 Atomic orbital electron populations 1.21747 0.89183 1.04013 1.04282 1.23310 0.98119 0.94874 0.85297 0.91649 1.23128 0.85193 1.02822 0.99253 1.59201 1.09428 1.26317 1.26252 1.22204 0.95692 0.86924 1.00727 1.21489 0.94940 0.94460 1.02203 1.23122 0.97890 1.00245 1.02404 1.84618 1.05920 1.16207 1.89422 1.23020 0.97645 0.94512 1.53762 0.90959 1.26048 0.94558 1.03762 0.94440 1.70141 1.00846 1.36995 1.46326 0.85089 0.77660 0.76716 0.79102 1.18835 1.19921 1.19015 1.18856 0.95281 1.06266 0.87904 1.21212 0.93290 0.97830 0.99495 1.21300 1.01242 1.01655 0.92284 1.21267 0.92636 0.98142 0.99293 1.20734 0.95793 1.04101 0.95894 1.19262 0.84764 0.99921 0.93757 1.86256 1.22001 1.72702 1.42697 0.87987 0.91372 0.91000 0.88960 0.86016 0.94758 0.88124 0.91017 0.91152 0.92508 0.91493 0.91929 0.85455 0.84053 0.82531 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.60 71.98 0.69 -1.00 16 2 C 0.04 0.80 3.44 30.73 0.11 0.91 16 3 H 0.07 1.37 6.94 -2.39 -0.02 1.35 16 4 C 0.02 0.45 5.32 86.47 0.46 0.91 16 5 N -0.50 -12.68 4.66 -694.35 -3.24 -15.91 16 6 C 0.07 1.89 4.58 86.30 0.39 2.29 16 7 C -0.09 -3.06 4.17 30.60 0.13 -2.94 16 8 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 9 S -0.19 -10.19 21.44 -56.49 -1.21 -11.40 16 10 C -0.54 -31.46 9.50 67.96 0.65 -30.82 16 11 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 12 C 0.02 0.97 5.49 84.86 0.47 1.44 16 13 N -0.91 -54.91 13.22 21.65 0.29 -54.63 16 14 Si 0.99 43.93 29.55 68.60 2.03 45.95 16 15 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 C 0.01 0.37 5.06 38.25 0.19 0.57 16 19 C -0.10 -2.80 7.61 22.44 0.17 -2.63 16 20 C -0.15 -3.58 10.03 22.23 0.22 -3.36 16 21 C -0.10 -2.04 10.04 22.26 0.22 -1.82 16 22 C -0.15 -3.45 9.94 22.39 0.22 -3.23 16 23 C 0.07 1.90 6.47 22.57 0.15 2.04 16 24 O -0.32 -8.08 10.06 -95.21 -0.96 -9.04 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.12 1.73 7.82 -2.39 -0.02 1.71 16 30 H 0.03 0.94 7.11 -2.39 -0.02 0.92 16 31 H 0.10 2.28 7.84 -2.39 -0.02 2.26 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.47 5.12 -2.39 -0.01 2.46 16 34 H 0.06 2.30 8.14 -2.40 -0.02 2.28 16 35 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.13 3.80 6.37 -2.91 -0.02 3.78 16 38 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 39 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.14 2.79 8.06 -2.92 -0.02 2.77 16 Total: -1.00 -69.62 335.67 2.41 -67.22 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.02 Total: 18.56 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 4.48 Total: -40.75 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -2.95 Total: -70.54 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.96 Total: -9.04 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -10.19 SS G_CDS: -1.21 Total: -11.40 kcal Total: -69.62 2.41 -67.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.499 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds