Wall clock time and date at job start Tue Mar 31 2020 08:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47203 * 2 1 4 4 C 1.50700 * 109.47339 * 239.99714 * 2 1 3 5 5 O 1.21295 * 120.00274 * 259.42211 * 4 2 1 6 6 N 1.34773 * 120.00003 * 79.41966 * 4 2 1 7 7 C 1.37100 * 120.00444 * 183.98223 * 6 4 2 8 8 H 1.07993 * 119.99882 * 227.88854 * 7 6 4 9 9 C 1.38947 * 119.99619 * 47.88693 * 7 6 4 10 10 N 1.31415 * 120.00325 * 11.61039 * 9 7 6 11 11 Si 1.86795 * 119.99881 * 191.60470 * 9 7 6 12 12 H 1.48503 * 109.47094 * 60.00270 * 11 9 7 13 13 H 1.48507 * 109.47086 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47469 * 299.99875 * 11 9 7 15 15 C 1.46505 * 119.99568 * 3.98807 * 6 4 2 16 16 C 1.55240 * 110.46733 * 228.59551 * 15 6 4 17 17 C 1.54888 * 102.59026 * 203.39637 * 16 15 6 18 18 C 1.54263 * 104.31402 * 37.92992 * 17 16 15 19 19 C 1.53877 * 106.59925 * 336.32556 * 18 17 16 20 20 C 1.50709 * 109.47054 * 119.99972 * 2 1 3 21 21 C 1.33382 * 125.20261 * 239.71763 * 20 2 1 22 22 C 1.38425 * 114.92078 * 179.85713 * 21 20 2 23 23 C 1.33383 * 114.92101 * 0.43740 * 22 21 20 24 24 S 1.75885 * 125.20183 * 60.02617 * 20 2 1 25 25 H 1.08996 * 109.47080 * 63.86497 * 1 2 3 26 26 H 1.09006 * 109.46800 * 183.86568 * 1 2 3 27 27 H 1.08997 * 109.46970 * 303.86327 * 1 2 3 28 28 H 0.97001 * 120.00325 * 179.97438 * 10 9 7 29 29 H 1.08997 * 110.43853 * 351.24091 * 15 6 4 30 30 H 1.09001 * 110.89960 * 85.09778 * 16 15 6 31 31 H 1.09000 * 110.76485 * 321.62905 * 16 15 6 32 32 H 1.09000 * 110.48141 * 279.18474 * 17 16 15 33 33 H 1.09005 * 110.48978 * 156.67768 * 17 16 15 34 34 H 1.09000 * 110.03121 * 95.60788 * 18 17 16 35 35 H 1.09001 * 110.03330 * 216.99211 * 18 17 16 36 36 H 1.09004 * 110.03241 * 119.28323 * 19 18 17 37 37 H 1.08994 * 110.03271 * 240.66612 * 19 18 17 38 38 H 1.08005 * 122.53827 * 0.02562 * 21 20 2 39 39 H 1.08000 * 122.53797 * 180.20264 * 22 21 20 40 40 H 1.07995 * 125.20561 * 179.75130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4164 -1.8585 -1.1536 6 7 2.0550 -0.0703 -2.4162 7 6 2.4345 -0.7408 -3.5502 8 1 3.1554 -0.2997 -4.2225 9 6 1.8916 -1.9879 -3.8343 10 7 0.8572 -2.4252 -3.1519 11 14 2.6320 -3.0427 -5.1865 12 1 4.0522 -3.3345 -4.8651 13 1 1.8757 -4.3165 -5.2908 14 1 2.5563 -2.3155 -6.4791 15 6 1.6740 1.3423 -2.4933 16 6 0.6589 1.5686 -3.6458 17 6 0.8453 3.0717 -3.9696 18 6 2.3625 3.3084 -3.8216 19 6 2.8894 2.2088 -2.8829 20 6 2.0323 -0.7104 1.2305 21 6 2.8068 -0.1662 2.1703 22 6 3.1408 -1.0129 3.2132 23 6 2.6450 -2.2474 3.1158 24 16 1.6933 -2.3863 1.6432 25 1 -0.3633 0.4527 -0.9226 26 1 -0.3633 -1.0254 0.0693 27 1 -0.3633 0.5726 0.8533 28 1 0.4780 -3.2957 -3.3505 29 1 1.2562 1.6762 -1.5436 30 1 -0.3593 1.3687 -3.3119 31 1 0.9111 0.9532 -4.5093 32 1 0.2922 3.6864 -3.2594 33 1 0.5236 3.2852 -4.9890 34 1 2.8487 3.2335 -4.7943 35 1 2.5465 4.2910 -3.3871 36 1 3.6314 1.6003 -3.4001 37 1 3.3298 2.6574 -1.9926 38 1 3.1453 0.8583 2.1225 39 1 3.7591 -0.6989 4.0411 40 1 2.8039 -3.0404 3.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:32 Heat of formation + Delta-G solvation = -1.911629 kcal Electronic energy + Delta-G solvation = -22318.456215 eV Core-core repulsion = 19224.825658 eV Total energy + Delta-G solvation = -3093.630557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.10223 -37.44310 -36.54468 -33.54288 -32.99937 -31.24884 -28.15234 -28.02211 -26.78475 -25.16101 -23.91255 -22.20685 -19.98705 -19.80606 -19.36643 -18.72603 -16.66890 -16.11827 -15.86265 -15.11806 -14.91163 -14.63052 -14.08105 -13.63123 -13.41141 -13.08727 -12.74844 -12.53997 -12.34795 -12.13772 -11.72942 -11.71829 -11.49240 -11.18248 -10.95355 -10.89633 -10.76748 -10.71650 -10.54266 -10.50750 -10.47365 -10.18647 -10.01062 -9.95928 -9.70400 -8.66458 -8.33163 -7.96290 -7.64742 -7.00597 -6.06336 -3.85337 1.54802 2.25806 2.68713 3.21057 3.31871 3.38270 3.41577 4.19415 4.41129 4.89705 5.17989 5.20843 5.24341 5.37211 5.42417 5.45755 5.71902 5.76146 5.87194 5.90001 5.97451 6.03276 6.08848 6.11971 6.18226 6.24343 6.30764 6.33073 6.42260 6.47086 6.56858 6.59549 6.69800 6.79558 6.86213 6.94318 6.98600 7.19347 7.67741 8.34988 9.14007 9.22094 9.70398 10.34568 11.02665 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.007019 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.097481 B = 3987.961244 C = 5350.388892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 H 0.090 0.910 4 C 0.492 3.508 5 O -0.524 6.524 6 N -0.447 5.447 7 C -0.334 4.334 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.839 5.839 11 Si 0.908 3.092 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.127 3.873 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.165 4.165 22 C -0.136 4.136 23 C -0.255 4.255 24 S 0.172 5.828 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 8.093 6.430 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.072 4.072 3 H 0.108 0.892 4 C 0.277 3.723 5 O -0.400 6.400 6 N -0.169 5.169 7 C -0.461 4.461 8 H 0.091 0.909 9 C -0.139 4.139 10 N -0.472 5.472 11 Si 0.736 3.264 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.204 1.204 15 C 0.021 3.979 16 C -0.157 4.157 17 C -0.163 4.163 18 C -0.155 4.155 19 C -0.174 4.174 20 C -0.252 4.252 21 C -0.196 4.196 22 C -0.168 4.168 23 C -0.391 4.391 24 S 0.438 5.562 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.565 6.115 5.821 8.586 hybrid contribution 1.210 0.668 0.024 1.383 sum -0.354 6.782 5.845 8.960 Atomic orbital electron populations 1.21711 0.92709 1.02808 1.01684 1.19971 0.97094 0.98872 0.91236 0.89239 1.19629 0.81952 0.87641 0.83039 1.90535 1.48186 1.17241 1.84071 1.43132 1.60914 1.07173 1.05690 1.18712 1.24186 1.02016 1.01210 0.90898 1.25254 0.93940 0.98245 0.96468 1.69795 1.19690 1.18778 1.38987 0.86350 0.79577 0.79548 0.80973 1.20116 1.21288 1.20412 1.22039 0.93445 0.84890 0.97500 1.22726 0.98343 0.94236 1.00356 1.22328 0.95881 0.97629 1.00483 1.22035 0.96080 0.97917 0.99517 1.22496 0.99447 0.96780 0.98670 1.24207 1.03758 0.97550 0.99672 1.19950 1.02608 1.01359 0.95640 1.19925 1.03324 0.93361 1.00192 1.25754 1.08738 1.01259 1.03390 1.84587 1.48604 1.09892 1.13158 0.91425 0.91918 0.92858 0.92719 0.91125 0.92547 0.89349 0.92516 0.92403 0.92333 0.92858 0.90738 0.93010 0.85180 0.85440 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.84 37.16 0.33 -2.02 16 2 C -0.05 -0.94 2.23 -92.92 -0.21 -1.15 16 3 H 0.09 1.57 6.59 -51.93 -0.34 1.22 16 4 C 0.49 12.09 5.99 -10.99 -0.07 12.02 16 5 O -0.52 -14.92 13.11 5.54 0.07 -14.84 16 6 N -0.45 -10.69 2.51 -105.77 -0.27 -10.95 16 7 C -0.33 -8.81 7.20 -14.93 -0.11 -8.92 16 8 H 0.07 1.89 7.12 -52.49 -0.37 1.52 16 9 C 0.07 1.93 4.61 -17.47 -0.08 1.85 16 10 N -0.84 -23.94 11.74 55.50 0.65 -23.29 16 11 Si 0.91 21.70 29.57 -169.99 -5.03 16.67 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.13 2.41 2.60 -66.08 -0.17 2.24 16 16 C -0.12 -2.15 6.38 -24.55 -0.16 -2.30 16 17 C -0.13 -1.79 6.82 -25.07 -0.17 -1.96 16 18 C -0.12 -1.67 6.80 -25.61 -0.17 -1.84 16 19 C -0.14 -2.29 6.44 -25.61 -0.16 -2.46 16 20 C -0.13 -2.54 4.81 -36.00 -0.17 -2.72 16 21 C -0.17 -2.77 10.01 -41.21 -0.41 -3.19 16 22 C -0.14 -2.09 10.18 -41.21 -0.42 -2.51 16 23 C -0.26 -4.03 11.23 29.04 0.33 -3.70 16 24 S 0.17 3.26 21.65 -107.50 -2.33 0.94 16 25 H 0.07 1.22 7.12 -51.93 -0.37 0.85 16 26 H 0.06 1.23 7.87 -51.93 -0.41 0.83 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.07 1.24 4.92 -51.93 -0.26 0.98 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.85 6.97 -51.93 -0.36 1.49 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.42 6.91 -51.93 -0.36 1.06 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.15 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -30.81 331.02 -9.39 -40.20 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.83 Total: 2.96 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.65 Total: -16.67 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.39 Total: -34.24 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.07 Total: -14.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.33 Total: 0.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.81 -9.39 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.288 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds