Wall clock time and date at job start Tue Mar 31 2020 08:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47203 * 2 1 4 4 C 1.50700 * 109.47339 * 239.99714 * 2 1 3 5 5 O 1.21295 * 120.00274 * 259.42211 * 4 2 1 6 6 N 1.34773 * 120.00003 * 79.41966 * 4 2 1 7 7 C 1.37100 * 120.00444 * 183.98223 * 6 4 2 8 8 H 1.07993 * 119.99882 * 227.88854 * 7 6 4 9 9 C 1.38947 * 119.99619 * 47.88693 * 7 6 4 10 10 N 1.31415 * 120.00325 * 11.61039 * 9 7 6 11 11 Si 1.86795 * 119.99881 * 191.60470 * 9 7 6 12 12 H 1.48503 * 109.47094 * 60.00270 * 11 9 7 13 13 H 1.48507 * 109.47086 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47469 * 299.99875 * 11 9 7 15 15 C 1.46505 * 119.99568 * 3.98807 * 6 4 2 16 16 C 1.55240 * 110.46733 * 228.59551 * 15 6 4 17 17 C 1.54888 * 102.59026 * 203.39637 * 16 15 6 18 18 C 1.54263 * 104.31402 * 37.92992 * 17 16 15 19 19 C 1.53877 * 106.59925 * 336.32556 * 18 17 16 20 20 C 1.50709 * 109.47054 * 119.99972 * 2 1 3 21 21 C 1.33382 * 125.20261 * 239.71763 * 20 2 1 22 22 C 1.38425 * 114.92078 * 179.85713 * 21 20 2 23 23 C 1.33383 * 114.92101 * 0.43740 * 22 21 20 24 24 S 1.75885 * 125.20183 * 60.02617 * 20 2 1 25 25 H 1.08996 * 109.47080 * 63.86497 * 1 2 3 26 26 H 1.09006 * 109.46800 * 183.86568 * 1 2 3 27 27 H 1.08997 * 109.46970 * 303.86327 * 1 2 3 28 28 H 0.97001 * 120.00325 * 179.97438 * 10 9 7 29 29 H 1.08997 * 110.43853 * 351.24091 * 15 6 4 30 30 H 1.09001 * 110.89960 * 85.09778 * 16 15 6 31 31 H 1.09000 * 110.76485 * 321.62905 * 16 15 6 32 32 H 1.09000 * 110.48141 * 279.18474 * 17 16 15 33 33 H 1.09005 * 110.48978 * 156.67768 * 17 16 15 34 34 H 1.09000 * 110.03121 * 95.60788 * 18 17 16 35 35 H 1.09001 * 110.03330 * 216.99211 * 18 17 16 36 36 H 1.09004 * 110.03241 * 119.28323 * 19 18 17 37 37 H 1.08994 * 110.03271 * 240.66612 * 19 18 17 38 38 H 1.08005 * 122.53827 * 0.02562 * 21 20 2 39 39 H 1.08000 * 122.53797 * 180.20264 * 22 21 20 40 40 H 1.07995 * 125.20561 * 179.75130 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.4164 -1.8585 -1.1536 6 7 2.0550 -0.0703 -2.4162 7 6 2.4345 -0.7408 -3.5502 8 1 3.1554 -0.2997 -4.2225 9 6 1.8916 -1.9879 -3.8343 10 7 0.8572 -2.4252 -3.1519 11 14 2.6320 -3.0427 -5.1865 12 1 4.0522 -3.3345 -4.8651 13 1 1.8757 -4.3165 -5.2908 14 1 2.5563 -2.3155 -6.4791 15 6 1.6740 1.3423 -2.4933 16 6 0.6589 1.5686 -3.6458 17 6 0.8453 3.0717 -3.9696 18 6 2.3625 3.3084 -3.8216 19 6 2.8894 2.2088 -2.8829 20 6 2.0323 -0.7104 1.2305 21 6 2.8068 -0.1662 2.1703 22 6 3.1408 -1.0129 3.2132 23 6 2.6450 -2.2474 3.1158 24 16 1.6933 -2.3863 1.6432 25 1 -0.3633 0.4527 -0.9226 26 1 -0.3633 -1.0254 0.0693 27 1 -0.3633 0.5726 0.8533 28 1 0.4780 -3.2957 -3.3505 29 1 1.2562 1.6762 -1.5436 30 1 -0.3593 1.3687 -3.3119 31 1 0.9111 0.9532 -4.5093 32 1 0.2922 3.6864 -3.2594 33 1 0.5236 3.2852 -4.9890 34 1 2.8487 3.2335 -4.7943 35 1 2.5465 4.2910 -3.3871 36 1 3.6314 1.6003 -3.4001 37 1 3.3298 2.6574 -1.9926 38 1 3.1453 0.8583 2.1225 39 1 3.7591 -0.6989 4.0411 40 1 2.8039 -3.0404 3.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078208086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:32 Heat of formation + Delta-G solvation = -18.433902 kcal Electronic energy + Delta-G solvation = -22319.172675 eV Core-core repulsion = 19224.825658 eV Total energy + Delta-G solvation = -3094.347017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.78329 -38.79041 -38.05824 -35.31545 -34.64120 -33.12825 -29.49200 -29.36658 -28.29095 -27.00936 -25.34509 -23.74779 -21.49373 -21.18058 -20.95084 -20.05955 -18.35391 -17.77682 -17.39557 -16.83874 -16.28687 -16.20981 -15.68817 -15.33125 -14.97201 -14.63212 -14.11901 -13.99653 -13.76567 -13.48582 -13.37422 -13.15219 -13.05664 -12.79759 -12.72510 -12.55860 -12.34502 -12.26349 -12.16180 -12.00745 -11.90780 -11.76802 -11.37720 -11.27021 -11.13104 -10.67656 -10.00815 -9.40858 -9.16285 -8.92167 -8.12640 -5.93337 0.23022 0.91466 1.35814 1.38716 1.43087 1.46248 1.95549 2.30013 2.54599 3.22468 3.29875 3.78263 3.93047 3.97002 4.01638 4.29192 4.31857 4.34791 4.40472 4.60234 4.72126 4.74702 4.77893 4.81520 4.85603 4.88031 4.92389 4.98874 5.13666 5.20945 5.23507 5.31176 5.34537 5.48093 5.49135 5.59697 5.60314 5.70009 5.74763 6.30421 7.14349 7.30465 7.79116 8.45473 8.94992 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.007019 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.097481 B = 3987.961244 C = 5350.388892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.037 4.037 3 H 0.115 0.885 4 C 0.477 3.523 5 O -0.574 6.574 6 N -0.460 5.460 7 C -0.336 4.336 8 H 0.069 0.931 9 C 0.022 3.978 10 N -0.870 5.870 11 Si 0.959 3.041 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.259 1.259 15 C 0.118 3.882 16 C -0.119 4.119 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.161 4.161 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.238 4.238 24 S 0.088 5.912 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.255 0.745 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 11.102 7.855 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.060 4.060 3 H 0.133 0.867 4 C 0.265 3.735 5 O -0.454 6.454 6 N -0.181 5.181 7 C -0.464 4.464 8 H 0.087 0.913 9 C -0.183 4.183 10 N -0.505 5.505 11 Si 0.785 3.215 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.184 1.184 15 C 0.014 3.986 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.171 4.171 20 C -0.279 4.279 21 C -0.182 4.182 22 C -0.167 4.167 23 C -0.373 4.373 24 S 0.353 5.647 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.811 9.176 7.221 11.704 hybrid contribution 1.054 -0.218 -0.332 1.126 sum 0.243 8.958 6.889 11.303 Atomic orbital electron populations 1.21642 0.91838 1.01630 1.02895 1.19845 0.97730 0.99355 0.89095 0.86709 1.20524 0.81066 0.87409 0.84516 1.90495 1.50167 1.19511 1.85245 1.43396 1.60662 1.09006 1.05047 1.18865 1.23562 1.02282 1.01704 0.91300 1.25947 0.94419 0.99511 0.98449 1.69917 1.21180 1.18609 1.40811 0.85547 0.77995 0.78196 0.79743 1.21079 1.21607 1.18374 1.22333 0.94914 0.82397 0.98909 1.22652 0.97633 0.96919 0.98566 1.22288 0.96376 0.94476 1.01975 1.22019 0.95599 0.98260 0.99006 1.22453 0.97780 0.96926 0.99909 1.24198 1.06164 0.96985 1.00569 1.20395 1.00363 1.02691 0.94788 1.20352 1.03021 0.92669 1.00704 1.26048 1.07107 1.02490 1.01690 1.84885 1.51157 1.12096 1.16564 0.92046 0.94718 0.89188 0.93621 0.89108 0.93197 0.92955 0.89976 0.91188 0.92408 0.89675 0.93746 0.90997 0.82400 0.81540 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.84 71.98 0.64 -3.71 16 2 C -0.04 -1.43 2.23 -12.28 -0.03 -1.46 16 3 H 0.12 3.73 6.59 -2.39 -0.02 3.71 16 4 C 0.48 23.99 5.99 87.66 0.52 24.51 16 5 O -0.57 -34.13 13.11 -3.08 -0.04 -34.17 16 6 N -0.46 -22.40 2.51 -606.94 -1.52 -23.92 16 7 C -0.34 -18.33 7.20 84.04 0.61 -17.72 16 8 H 0.07 3.71 7.12 -2.91 -0.02 3.69 16 9 C 0.02 1.26 4.61 84.93 0.39 1.66 16 10 N -0.87 -52.16 11.74 21.66 0.25 -51.91 16 11 Si 0.96 46.14 29.57 68.60 2.03 48.17 16 12 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 14 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 15 C 0.12 4.42 2.60 46.19 0.12 4.54 16 16 C -0.12 -4.28 6.38 32.01 0.20 -4.07 16 17 C -0.11 -2.90 6.82 31.67 0.22 -2.68 16 18 C -0.11 -2.79 6.80 31.32 0.21 -2.58 16 19 C -0.13 -4.23 6.44 31.32 0.20 -4.03 16 20 C -0.16 -6.01 4.81 24.59 0.12 -5.89 16 21 C -0.15 -4.63 10.01 21.22 0.21 -4.41 16 22 C -0.14 -3.71 10.18 21.22 0.22 -3.49 16 23 C -0.24 -7.01 11.23 66.72 0.75 -6.27 16 24 S 0.09 3.41 21.65 -56.49 -1.22 2.19 16 25 H 0.06 2.21 7.12 -2.39 -0.02 2.19 16 26 H 0.03 1.41 7.87 -2.38 -0.02 1.39 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.09 2.98 4.92 -2.39 -0.01 2.97 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 2.24 6.97 -2.39 -0.02 2.22 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.68 6.91 -2.39 -0.02 1.66 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.18 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -71.50 331.02 4.91 -66.60 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.03 Total: 18.64 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.38 Total: -25.60 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -1.27 Total: -75.83 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.04 Total: -34.17 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.22 Total: 2.19 kcal Total: -71.50 4.91 -66.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.162 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds