Wall clock time and date at job start Tue Mar 31 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46646 * 2 1 4 4 H 1.08993 * 109.47555 * 304.99956 * 3 2 1 5 5 C 1.53002 * 109.46816 * 64.99976 * 3 2 1 6 6 C 1.50699 * 109.46959 * 184.99537 * 3 2 1 7 7 O 1.21297 * 120.00199 * 0.02562 * 6 3 2 8 8 N 1.34774 * 120.00307 * 179.97438 * 6 3 2 9 9 C 1.40134 * 120.00450 * 184.47192 * 8 6 3 10 10 C 1.38643 * 120.10174 * 325.32791 * 9 8 6 11 11 C 1.38249 * 120.01104 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20982 * 359.97438 * 11 10 9 13 13 C 1.38190 * 120.19907 * 0.02562 * 12 11 10 14 14 C 1.38787 * 119.98800 * 359.97438 * 13 12 11 15 15 S 1.76207 * 120.10506 * 180.02562 * 14 13 12 16 16 C 1.81398 * 102.99666 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.47045 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99563 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99893 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47098 * 89.99950 * 21 19 17 23 23 H 1.48506 * 109.47356 * 210.00016 * 21 19 17 24 24 H 1.48505 * 109.47289 * 330.00260 * 21 19 17 25 25 H 1.09001 * 109.47431 * 299.99728 * 1 2 3 26 26 H 1.09002 * 109.47388 * 60.00045 * 1 2 3 27 27 H 1.09007 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47431 * 240.00272 * 2 1 3 29 29 H 1.08994 * 109.47236 * 119.99693 * 2 1 3 30 30 H 1.08995 * 109.47354 * 299.99802 * 5 3 2 31 31 H 1.09007 * 109.47242 * 59.99890 * 5 3 2 32 32 H 1.09007 * 109.47073 * 179.97438 * 5 3 2 33 33 H 0.97006 * 119.99606 * 4.47600 * 8 6 3 34 34 H 1.08000 * 119.99546 * 0.03769 * 10 9 8 35 35 H 1.08004 * 119.89381 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.89574 * 180.28012 * 12 11 10 37 37 H 1.07997 * 120.00920 * 180.02562 * 13 12 11 38 38 H 1.09004 * 109.47577 * 299.99992 * 16 15 14 39 39 H 1.09001 * 109.47627 * 60.00172 * 16 15 14 40 40 H 0.96993 * 120.00471 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6350 2.1265 1.3074 6 6 3.5418 1.4445 -0.1237 7 8 4.1450 0.3952 -0.2045 8 7 4.2147 2.6120 -0.1457 9 6 5.6004 2.6183 -0.3547 10 6 6.3842 1.5913 0.1484 11 6 7.7511 1.5997 -0.0584 12 6 8.3414 2.6303 -0.7671 13 6 7.5684 3.6583 -1.2724 14 6 6.1954 3.6582 -1.0696 15 16 5.2068 4.9671 -1.7131 16 6 6.4240 6.0313 -2.5355 17 6 5.7230 7.2172 -3.1466 18 1 4.6523 7.3201 -3.0502 19 6 6.4485 8.1703 -3.8296 20 7 7.7523 8.0447 -3.9475 21 14 5.5794 9.6398 -4.5876 22 1 5.5257 10.7469 -3.5994 23 1 6.3232 10.0874 -5.7926 24 1 4.1984 9.2533 -4.9735 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.5488 2.1252 1.3969 31 1 2.0697 1.5875 2.1492 32 1 1.9987 3.1542 1.3076 33 1 3.7399 3.4480 -0.0168 34 1 5.9268 0.7844 0.7018 35 1 8.3598 0.7984 0.3339 36 1 9.4090 2.6294 -0.9296 37 1 8.0325 4.4614 -1.8257 38 1 7.1553 6.3785 -1.8055 39 1 6.9314 5.4662 -3.3175 40 1 8.2626 8.7149 -4.4282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:32 Heat of formation + Delta-G solvation = -36.060853 kcal Electronic energy + Delta-G solvation = -20581.811640 eV Core-core repulsion = 17486.700262 eV Total energy + Delta-G solvation = -3095.111379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50766 -38.34190 -35.60728 -34.66175 -33.28901 -30.76824 -30.43270 -28.82821 -28.61412 -25.52628 -23.64829 -22.83730 -22.54259 -21.09507 -19.70387 -17.97868 -17.06545 -16.67260 -16.28032 -15.67215 -15.09437 -15.01035 -14.63463 -14.29055 -14.02045 -13.70903 -13.39703 -13.07877 -12.96836 -12.79813 -12.40889 -12.36503 -12.23271 -11.91382 -11.80589 -11.66881 -11.24083 -11.01083 -10.97519 -10.87667 -10.79089 -10.29620 -10.01579 -9.72981 -9.61063 -9.22980 -9.16845 -8.67181 -8.05398 -6.62464 -6.30662 -4.36713 1.50322 1.68746 2.36851 2.66066 3.15591 3.19416 3.25756 3.29723 3.58394 4.07438 4.25936 4.48925 4.58898 4.71535 5.06943 5.09079 5.17386 5.26236 5.28507 5.32002 5.38189 5.55992 5.61192 5.67491 5.73350 5.80125 5.83000 5.89156 6.04794 6.15973 6.21304 6.49488 6.54883 6.72434 6.84662 6.91168 6.94670 7.27580 7.49897 7.61778 7.84925 8.17726 8.64194 9.27511 10.80513 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004009 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.158159 B = 6982.810621 C = 8490.444883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.111 4.111 4 H 0.102 0.898 5 C -0.148 4.148 6 C 0.518 3.482 7 O -0.527 6.527 8 N -0.662 5.662 9 C 0.145 3.855 10 C -0.108 4.108 11 C -0.126 4.126 12 C -0.114 4.114 13 C -0.118 4.118 14 C -0.092 4.092 15 S -0.167 6.167 16 C 0.076 3.924 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.412 0.588 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 -12.216 9.552 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.132 4.132 4 H 0.120 0.880 5 C -0.205 4.205 6 C 0.305 3.695 7 O -0.403 6.403 8 N -0.307 5.307 9 C 0.045 3.955 10 C -0.129 4.129 11 C -0.147 4.147 12 C -0.135 4.135 13 C -0.142 4.142 14 C -0.207 4.207 15 S 0.079 5.921 16 C -0.071 4.071 17 C -0.559 4.559 18 H 0.086 0.914 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.195 1.195 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.154 0.846 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.153 0.847 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.363 -12.597 9.413 18.302 hybrid contribution 0.942 1.123 -0.568 1.572 sum -8.422 -11.474 8.845 16.757 Atomic orbital electron populations 1.21847 0.95427 1.01849 1.01985 1.21340 0.95383 0.93998 1.03519 1.21376 0.91125 0.99710 1.00987 0.87989 1.21858 1.02560 1.00440 0.95669 1.20826 0.90145 0.83176 0.75316 1.90669 1.69997 1.31325 1.48331 1.43535 1.06366 1.10096 1.70676 1.17201 0.82566 0.96384 0.99385 1.21083 0.93226 0.98419 1.00188 1.20944 0.94253 0.98844 1.00694 1.21037 0.99607 0.94273 0.98572 1.21239 0.91966 0.99909 1.01129 1.21915 0.97503 0.99935 1.01387 1.85059 1.20150 1.20683 1.66198 1.21369 0.93648 0.94843 0.97198 1.20605 0.94475 1.05344 1.35499 0.91361 1.24952 0.94906 0.98211 0.95561 1.69938 1.05749 1.35586 1.41325 0.86321 0.79629 0.81819 0.78726 1.20246 1.20860 1.19499 0.92411 0.92576 0.92505 0.91034 0.91323 0.90921 0.91991 0.91939 0.75046 0.84575 0.86161 0.86097 0.84727 0.93746 0.93729 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.10 -1.00 4.75 -26.73 -0.13 -1.13 16 3 C -0.11 -1.12 2.73 -91.77 -0.25 -1.37 16 4 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.15 -1.20 8.84 37.16 0.33 -0.87 16 6 C 0.52 7.26 7.00 -10.99 -0.08 7.19 16 7 O -0.53 -8.89 13.34 5.54 0.07 -8.81 16 8 N -0.66 -9.81 4.94 -9.71 -0.05 -9.86 16 9 C 0.14 2.52 6.32 -83.43 -0.53 1.99 16 10 C -0.11 -1.76 8.70 -39.43 -0.34 -2.11 16 11 C -0.13 -1.88 10.04 -39.55 -0.40 -2.28 16 12 C -0.11 -1.80 10.04 -39.57 -0.40 -2.20 16 13 C -0.12 -2.18 9.36 -39.40 -0.37 -2.55 16 14 C -0.09 -1.76 6.12 -38.90 -0.24 -2.00 16 15 S -0.17 -3.48 20.72 -107.50 -2.23 -5.70 16 16 C 0.08 1.89 4.09 36.01 0.15 2.04 16 17 C -0.52 -14.01 9.13 -34.44 -0.31 -14.32 16 18 H 0.07 1.82 7.71 -52.49 -0.40 1.41 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 20 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 21 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.79 7.95 -51.93 -0.41 0.37 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.49 7.47 -51.93 -0.39 0.10 16 33 H 0.41 5.53 7.27 -40.82 -0.30 5.23 16 34 H 0.14 2.19 6.20 -52.49 -0.33 1.87 16 35 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.65 5.88 -52.49 -0.31 2.34 16 38 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 39 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -29.77 341.64 -9.36 -39.12 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.72 Total: 5.38 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.30 Total: -16.63 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.69 Total: -34.11 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.23 Total: -5.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.77 -9.36 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.061 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds