Wall clock time and date at job start Tue Mar 31 2020 06:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46646 * 2 1 4 4 H 1.08993 * 109.47555 * 304.99956 * 3 2 1 5 5 C 1.53002 * 109.46816 * 64.99976 * 3 2 1 6 6 C 1.50699 * 109.46959 * 184.99537 * 3 2 1 7 7 O 1.21297 * 120.00199 * 0.02562 * 6 3 2 8 8 N 1.34774 * 120.00307 * 179.97438 * 6 3 2 9 9 C 1.40134 * 120.00450 * 184.47192 * 8 6 3 10 10 C 1.38643 * 120.10174 * 325.32791 * 9 8 6 11 11 C 1.38249 * 120.01104 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20982 * 359.97438 * 11 10 9 13 13 C 1.38190 * 120.19907 * 0.02562 * 12 11 10 14 14 C 1.38787 * 119.98800 * 359.97438 * 13 12 11 15 15 S 1.76207 * 120.10506 * 180.02562 * 14 13 12 16 16 C 1.81398 * 102.99666 * 0.02562 * 15 14 13 17 17 C 1.50706 * 109.47045 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99563 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00000 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00254 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99893 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47098 * 89.99950 * 21 19 17 23 23 H 1.48506 * 109.47356 * 210.00016 * 21 19 17 24 24 H 1.48505 * 109.47289 * 330.00260 * 21 19 17 25 25 H 1.09001 * 109.47431 * 299.99728 * 1 2 3 26 26 H 1.09002 * 109.47388 * 60.00045 * 1 2 3 27 27 H 1.09007 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47431 * 240.00272 * 2 1 3 29 29 H 1.08994 * 109.47236 * 119.99693 * 2 1 3 30 30 H 1.08995 * 109.47354 * 299.99802 * 5 3 2 31 31 H 1.09007 * 109.47242 * 59.99890 * 5 3 2 32 32 H 1.09007 * 109.47073 * 179.97438 * 5 3 2 33 33 H 0.97006 * 119.99606 * 4.47600 * 8 6 3 34 34 H 1.08000 * 119.99546 * 0.03769 * 10 9 8 35 35 H 1.08004 * 119.89381 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.89574 * 180.28012 * 12 11 10 37 37 H 1.07997 * 120.00920 * 180.02562 * 13 12 11 38 38 H 1.09004 * 109.47577 * 299.99992 * 16 15 14 39 39 H 1.09001 * 109.47627 * 60.00172 * 16 15 14 40 40 H 0.96993 * 120.00471 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6350 2.1265 1.3074 6 6 3.5418 1.4445 -0.1237 7 8 4.1450 0.3952 -0.2045 8 7 4.2147 2.6120 -0.1457 9 6 5.6004 2.6183 -0.3547 10 6 6.3842 1.5913 0.1484 11 6 7.7511 1.5997 -0.0584 12 6 8.3414 2.6303 -0.7671 13 6 7.5684 3.6583 -1.2724 14 6 6.1954 3.6582 -1.0696 15 16 5.2068 4.9671 -1.7131 16 6 6.4240 6.0313 -2.5355 17 6 5.7230 7.2172 -3.1466 18 1 4.6523 7.3201 -3.0502 19 6 6.4485 8.1703 -3.8296 20 7 7.7523 8.0447 -3.9475 21 14 5.5794 9.6398 -4.5876 22 1 5.5257 10.7469 -3.5994 23 1 6.3232 10.0874 -5.7926 24 1 4.1984 9.2533 -4.9735 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.5488 2.1252 1.3969 31 1 2.0697 1.5875 2.1492 32 1 1.9987 3.1542 1.3076 33 1 3.7399 3.4480 -0.0168 34 1 5.9268 0.7844 0.7018 35 1 8.3598 0.7984 0.3339 36 1 9.4090 2.6294 -0.9296 37 1 8.0325 4.4614 -1.8257 38 1 7.1553 6.3785 -1.8055 39 1 6.9314 5.4662 -3.3175 40 1 8.2626 8.7149 -4.4282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078568660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:31 Heat of formation + Delta-G solvation = -51.559605 kcal Electronic energy + Delta-G solvation = -20582.483717 eV Core-core repulsion = 17486.700262 eV Total energy + Delta-G solvation = -3095.783455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69203 -39.60039 -36.46401 -35.92275 -35.32957 -32.17932 -31.37668 -30.63773 -29.84417 -26.31267 -25.47730 -24.18626 -23.81838 -22.20788 -20.74008 -19.38003 -18.47475 -18.07732 -17.91037 -16.83102 -16.68280 -16.14486 -15.92342 -15.57179 -15.16807 -14.83682 -14.72868 -14.65844 -14.42196 -14.25714 -13.89512 -13.57761 -13.16107 -12.97504 -12.79571 -12.75169 -12.58228 -12.55814 -12.44996 -11.91474 -11.72985 -11.65123 -11.60031 -11.39306 -10.98936 -10.88941 -10.75968 -10.51607 -9.38544 -8.36734 -8.22904 -6.51382 0.17395 0.31446 0.75735 1.40815 1.41568 1.52022 1.53580 1.77240 2.03731 2.34858 2.74048 2.98751 3.54155 3.81633 3.87173 3.96708 4.12634 4.31701 4.39223 4.46304 4.49893 4.53547 4.61806 4.72590 4.84031 4.84344 4.89387 4.94888 5.01454 5.11043 5.17478 5.22286 5.26449 5.36305 5.43942 5.50786 5.51650 5.53733 5.80380 5.98003 6.33777 6.55838 7.02882 7.17686 8.75398 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.004009 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.158159 B = 6982.810621 C = 8490.444883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.105 4.105 4 H 0.113 0.887 5 C -0.145 4.145 6 C 0.515 3.485 7 O -0.557 6.557 8 N -0.661 5.661 9 C 0.143 3.857 10 C -0.115 4.115 11 C -0.109 4.109 12 C -0.113 4.113 13 C -0.135 4.135 14 C -0.119 4.119 15 S -0.150 6.150 16 C 0.081 3.919 17 C -0.541 4.541 18 H 0.069 0.931 19 C 0.017 3.983 20 N -0.922 5.922 21 Si 0.978 3.022 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.263 1.263 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.418 0.582 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.113 0.887 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 -12.771 10.390 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.126 4.126 4 H 0.131 0.869 5 C -0.202 4.202 6 C 0.304 3.696 7 O -0.435 6.435 8 N -0.306 5.306 9 C 0.043 3.957 10 C -0.137 4.137 11 C -0.130 4.130 12 C -0.133 4.133 13 C -0.159 4.159 14 C -0.234 4.234 15 S 0.095 5.905 16 C -0.067 4.067 17 C -0.580 4.580 18 H 0.087 0.913 19 C -0.184 4.184 20 N -0.561 5.561 21 Si 0.801 3.199 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.187 1.187 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.256 0.744 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.131 0.869 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.753 -13.166 10.271 19.861 hybrid contribution 1.434 1.131 -0.752 1.975 sum -9.319 -12.036 9.519 17.953 Atomic orbital electron populations 1.21819 0.93347 1.02586 1.02849 1.21321 0.97094 0.93284 1.02330 1.21456 0.87911 1.00566 1.02644 0.86896 1.21877 1.04018 1.00150 0.94154 1.21611 0.91691 0.82262 0.73991 1.90645 1.70975 1.32230 1.49618 1.43635 1.05566 1.10864 1.70584 1.17371 0.83908 0.95845 0.98623 1.21304 0.93975 0.98145 1.00272 1.21381 0.94002 0.98927 0.98708 1.21327 1.00854 0.93337 0.97799 1.21239 0.92243 1.00551 1.01874 1.21921 0.97754 1.00321 1.03443 1.84638 1.18626 1.20857 1.66381 1.21002 0.94243 0.95199 0.96241 1.20953 0.94686 1.06347 1.36035 0.91318 1.25912 0.95577 1.01134 0.95786 1.70052 1.07272 1.36735 1.42000 0.85250 0.78641 0.78062 0.77960 1.19292 1.20263 1.18687 0.91012 0.92192 0.91923 0.92935 0.91889 0.88665 0.92162 0.91732 0.74376 0.84065 0.82364 0.83274 0.86924 0.95966 0.96305 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 71.98 0.70 -1.15 16 2 C -0.10 -1.83 4.75 30.60 0.15 -1.69 16 3 C -0.10 -1.96 2.73 -11.54 -0.03 -1.99 16 4 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 5 C -0.14 -2.02 8.84 71.98 0.64 -1.38 16 6 C 0.51 14.06 7.00 87.66 0.61 14.67 16 7 O -0.56 -18.49 13.34 -3.08 -0.04 -18.53 16 8 N -0.66 -19.27 4.94 -303.02 -1.50 -20.76 16 9 C 0.14 4.93 6.32 38.22 0.24 5.17 16 10 C -0.12 -3.62 8.70 22.37 0.19 -3.43 16 11 C -0.11 -3.01 10.04 22.29 0.22 -2.78 16 12 C -0.11 -3.42 10.04 22.27 0.22 -3.20 16 13 C -0.13 -5.11 9.36 22.39 0.21 -4.91 16 14 C -0.12 -4.65 6.12 22.71 0.14 -4.51 16 15 S -0.15 -6.41 20.72 -56.49 -1.17 -7.58 16 16 C 0.08 4.21 4.09 71.24 0.29 4.50 16 17 C -0.54 -29.92 9.13 25.60 0.23 -29.69 16 18 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 19 C 0.02 0.96 5.46 84.66 0.46 1.42 16 20 N -0.92 -53.17 13.29 21.45 0.28 -52.89 16 21 Si 0.98 42.33 29.54 68.60 2.03 44.36 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 H 0.07 0.70 6.56 -2.39 -0.02 0.68 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 1.13 7.95 -2.39 -0.02 1.11 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 0.93 6.56 -2.39 -0.02 0.91 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 0.89 7.47 -2.38 -0.02 0.87 16 33 H 0.42 10.97 7.27 -92.70 -0.67 10.30 16 34 H 0.14 4.34 6.20 -2.91 -0.02 4.33 16 35 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.11 4.73 5.88 -2.91 -0.02 4.71 16 38 H 0.02 1.22 7.75 -2.39 -0.02 1.20 16 39 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -65.61 341.64 4.25 -61.36 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.37 Total: 23.02 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 4.28 Total: -28.97 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -1.21 Total: -73.65 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.04 Total: -18.53 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -1.17 Total: -7.58 kcal Total: -65.61 4.25 -61.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.798 kcal (2) G-P(sol) polarization free energy of solvation -65.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds