Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47312 * 2 1 4 4 H 1.09005 * 109.47004 * 55.00326 * 3 2 1 5 5 C 1.52998 * 109.47153 * 295.00558 * 3 2 1 6 6 C 1.50703 * 109.47583 * 175.00391 * 3 2 1 7 7 O 1.21296 * 119.99667 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00463 * 180.02562 * 6 3 2 9 9 C 1.40133 * 120.00196 * 185.52768 * 8 6 3 10 10 C 1.38651 * 120.09888 * 24.81963 * 9 8 6 11 11 C 1.38248 * 120.00722 * 180.02562 * 10 9 8 12 12 C 1.38296 * 120.21329 * 359.97438 * 11 10 9 13 13 C 1.38197 * 120.19911 * 359.97438 * 12 11 10 14 14 C 1.38790 * 119.98837 * 0.02562 * 13 12 11 15 15 S 1.76203 * 120.10283 * 179.97438 * 14 13 12 16 16 C 1.81392 * 103.00063 * 0.02562 * 15 14 13 17 17 C 1.50703 * 109.46941 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00283 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99774 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99725 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00337 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47265 * 89.99681 * 21 19 17 23 23 H 1.48504 * 109.46882 * 209.99840 * 21 19 17 24 24 H 1.48496 * 109.46732 * 329.99745 * 21 19 17 25 25 H 1.08998 * 109.47303 * 59.99839 * 1 2 3 26 26 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47027 * 299.99717 * 1 2 3 28 28 H 1.09007 * 109.47027 * 240.00283 * 2 1 3 29 29 H 1.09000 * 109.47533 * 120.00647 * 2 1 3 30 30 H 1.08993 * 109.47715 * 59.99766 * 5 3 2 31 31 H 1.09001 * 109.47333 * 179.97438 * 5 3 2 32 32 H 1.09005 * 109.46976 * 299.99785 * 5 3 2 33 33 H 0.97001 * 119.99858 * 5.53076 * 8 6 3 34 34 H 1.07995 * 119.99469 * 0.04144 * 10 9 8 35 35 H 1.08003 * 119.89420 * 180.02562 * 11 10 9 36 36 H 1.07996 * 119.90451 * 180.28006 * 12 11 10 37 37 H 1.08001 * 120.00498 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47208 * 299.99704 * 16 15 14 39 39 H 1.08997 * 109.47294 * 59.99652 * 16 15 14 40 40 H 0.97006 * 119.99830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1237 7 8 4.1451 0.3950 0.2045 8 7 4.2149 2.6118 0.1457 9 6 5.6163 2.6130 0.1438 10 6 6.3118 1.5348 -0.3819 11 6 7.6942 1.5377 -0.3823 12 6 8.3881 2.6140 0.1401 13 6 7.7036 3.6936 0.6653 14 6 6.3157 3.6994 0.6700 15 16 5.4400 5.0740 1.3395 16 6 6.7709 6.1835 1.8763 17 6 6.1740 7.4280 2.4814 18 1 5.1013 7.5400 2.5377 19 6 6.9973 8.4230 2.9639 20 7 6.4764 9.5088 3.4924 21 14 8.8528 8.2290 2.8671 22 1 9.3427 8.7896 1.5823 23 1 9.4860 8.9548 3.9974 24 1 9.2044 6.7884 2.9448 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5489 2.1253 -1.3968 31 1 1.9981 3.1544 -1.3071 32 1 2.0697 1.5875 -2.1492 33 1 3.7293 3.4513 0.1629 34 1 5.7734 0.6929 -0.7913 35 1 8.2342 0.6972 -0.7926 36 1 9.4680 2.6130 0.1331 37 1 8.2486 4.5326 1.0721 38 1 7.3879 5.6779 2.6191 39 1 7.3852 6.4558 1.0181 40 1 7.0557 10.2091 3.8316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078568664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = -29.665792 kcal Electronic energy + Delta-G solvation = -20631.987438 eV Core-core repulsion = 17537.153370 eV Total energy + Delta-G solvation = -3094.834068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64111 -38.43380 -35.67109 -34.77428 -33.20128 -30.93767 -30.49163 -29.41364 -28.89697 -25.56767 -23.54562 -22.81015 -22.47634 -21.12233 -19.77908 -18.03592 -17.18918 -16.87954 -16.67897 -15.75268 -15.17809 -15.02896 -14.53255 -14.26373 -14.09767 -13.73941 -13.54207 -13.34173 -13.25222 -12.95628 -12.57265 -12.52430 -12.37698 -11.99291 -11.88774 -11.71649 -11.33073 -11.04978 -10.93052 -10.91369 -10.61826 -10.36917 -10.30040 -9.81547 -9.64456 -9.31656 -9.30316 -8.81578 -8.10193 -6.74352 -6.30473 -4.34802 1.38828 1.56339 2.19687 2.59880 3.04270 3.13617 3.20840 3.21975 3.37932 3.98252 4.20389 4.42027 4.53968 4.67680 5.00799 5.03626 5.12420 5.14821 5.21068 5.25229 5.34631 5.45956 5.57433 5.62586 5.68713 5.71231 5.71959 5.84933 6.00979 6.07884 6.12524 6.34434 6.39669 6.44192 6.49785 6.60337 6.73488 7.17142 7.25715 7.42141 8.07415 8.14706 8.69017 9.24223 10.81116 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003980 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.458531 B = 7033.895279 C = 8270.862231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.111 4.111 4 H 0.102 0.898 5 C -0.148 4.148 6 C 0.517 3.483 7 O -0.524 6.524 8 N -0.660 5.660 9 C 0.154 3.846 10 C -0.116 4.116 11 C -0.120 4.120 12 C -0.119 4.119 13 C -0.118 4.118 14 C -0.105 4.105 15 S -0.132 6.132 16 C 0.034 3.966 17 C -0.522 4.522 18 H 0.085 0.915 19 C 0.084 3.916 20 N -0.886 5.886 21 Si 0.876 3.124 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.414 0.586 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -16.176 -9.343 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.132 4.132 4 H 0.120 0.880 5 C -0.205 4.205 6 C 0.305 3.695 7 O -0.400 6.400 8 N -0.305 5.305 9 C 0.053 3.947 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.140 4.140 13 C -0.143 4.143 14 C -0.221 4.221 15 S 0.114 5.886 16 C -0.114 4.114 17 C -0.561 4.561 18 H 0.103 0.897 19 C -0.122 4.122 20 N -0.523 5.523 21 Si 0.702 3.298 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.161 0.839 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.901 -16.432 -9.053 19.990 hybrid contribution 2.229 0.423 0.034 2.269 sum -4.672 -16.010 -9.019 18.960 Atomic orbital electron populations 1.21847 0.95362 1.01892 1.02028 1.21342 0.95455 0.93912 1.03534 1.21381 0.90967 0.99811 1.01078 0.88012 1.21855 1.02573 1.00536 0.95553 1.20865 0.90282 0.83090 0.75255 1.90647 1.69963 1.31441 1.47969 1.43616 1.04885 1.10013 1.71942 1.17237 0.82152 0.95247 1.00046 1.21223 0.94229 0.98343 1.00011 1.20954 0.93652 0.98458 1.01094 1.21010 0.99614 0.93777 0.99572 1.21123 0.92241 0.99598 1.01306 1.21907 0.96912 0.99565 1.03703 1.85108 1.18125 1.12774 1.72559 1.21719 0.93843 0.96722 0.99100 1.20387 0.95843 0.98988 1.40845 0.89695 1.24822 0.98814 0.94533 0.93994 1.69853 1.35903 1.07491 1.39077 0.86835 0.85432 0.79008 0.78521 1.19669 1.20589 1.18917 0.92370 0.92474 0.92558 0.91293 0.91024 0.90866 0.91832 0.91982 0.74831 0.83859 0.86057 0.86141 0.85347 0.93816 0.94296 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.10 -0.95 4.75 -26.73 -0.13 -1.08 16 3 C -0.11 -1.06 2.72 -91.77 -0.25 -1.31 16 4 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 5 C -0.15 -1.17 8.85 37.16 0.33 -0.84 16 6 C 0.52 6.92 6.96 -10.99 -0.08 6.85 16 7 O -0.52 -8.42 13.09 5.54 0.07 -8.35 16 8 N -0.66 -9.44 5.03 -9.71 -0.05 -9.49 16 9 C 0.15 2.56 6.44 -83.43 -0.54 2.02 16 10 C -0.12 -1.82 8.72 -39.43 -0.34 -2.16 16 11 C -0.12 -1.69 10.04 -39.56 -0.40 -2.09 16 12 C -0.12 -1.75 10.04 -39.57 -0.40 -2.15 16 13 C -0.12 -2.04 9.36 -39.39 -0.37 -2.41 16 14 C -0.11 -1.92 6.12 -38.90 -0.24 -2.15 16 15 S -0.13 -2.65 20.55 -107.50 -2.21 -4.86 16 16 C 0.03 0.78 3.16 36.01 0.11 0.90 16 17 C -0.52 -14.25 9.68 -34.44 -0.33 -14.58 16 18 H 0.09 2.52 7.96 -52.49 -0.42 2.10 16 19 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 20 N -0.89 -25.94 13.96 55.43 0.77 -25.17 16 21 Si 0.88 20.28 27.47 -169.99 -4.67 15.61 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 25 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 30 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 31 H 0.06 0.50 7.70 -51.93 -0.40 0.10 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.41 5.44 7.25 -40.82 -0.30 5.14 16 34 H 0.14 2.22 5.79 -52.49 -0.30 1.92 16 35 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 2.27 5.88 -52.49 -0.31 1.96 16 38 H 0.04 1.01 6.81 -51.92 -0.35 0.66 16 39 H 0.04 0.88 7.18 -51.93 -0.37 0.50 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -30.41 337.61 -9.03 -39.44 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.67 Total: 5.23 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.36 Total: -17.51 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.72 Total: -34.66 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.07 Total: -8.35 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.21 Total: -4.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.41 -9.03 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.777 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds