Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47312 * 2 1 4 4 H 1.09005 * 109.47004 * 55.00326 * 3 2 1 5 5 C 1.52998 * 109.47153 * 295.00558 * 3 2 1 6 6 C 1.50703 * 109.47583 * 175.00391 * 3 2 1 7 7 O 1.21296 * 119.99667 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00463 * 180.02562 * 6 3 2 9 9 C 1.40133 * 120.00196 * 185.52768 * 8 6 3 10 10 C 1.38651 * 120.09888 * 24.81963 * 9 8 6 11 11 C 1.38248 * 120.00722 * 180.02562 * 10 9 8 12 12 C 1.38296 * 120.21329 * 359.97438 * 11 10 9 13 13 C 1.38197 * 120.19911 * 359.97438 * 12 11 10 14 14 C 1.38790 * 119.98837 * 0.02562 * 13 12 11 15 15 S 1.76203 * 120.10283 * 179.97438 * 14 13 12 16 16 C 1.81392 * 103.00063 * 0.02562 * 15 14 13 17 17 C 1.50703 * 109.46941 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00283 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99774 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99725 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 120.00337 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47265 * 89.99681 * 21 19 17 23 23 H 1.48504 * 109.46882 * 209.99840 * 21 19 17 24 24 H 1.48496 * 109.46732 * 329.99745 * 21 19 17 25 25 H 1.08998 * 109.47303 * 59.99839 * 1 2 3 26 26 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47027 * 299.99717 * 1 2 3 28 28 H 1.09007 * 109.47027 * 240.00283 * 2 1 3 29 29 H 1.09000 * 109.47533 * 120.00647 * 2 1 3 30 30 H 1.08993 * 109.47715 * 59.99766 * 5 3 2 31 31 H 1.09001 * 109.47333 * 179.97438 * 5 3 2 32 32 H 1.09005 * 109.46976 * 299.99785 * 5 3 2 33 33 H 0.97001 * 119.99858 * 5.53076 * 8 6 3 34 34 H 1.07995 * 119.99469 * 0.04144 * 10 9 8 35 35 H 1.08003 * 119.89420 * 180.02562 * 11 10 9 36 36 H 1.07996 * 119.90451 * 180.28006 * 12 11 10 37 37 H 1.08001 * 120.00498 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47208 * 299.99704 * 16 15 14 39 39 H 1.08997 * 109.47294 * 59.99652 * 16 15 14 40 40 H 0.97006 * 119.99830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1237 7 8 4.1451 0.3950 0.2045 8 7 4.2149 2.6118 0.1457 9 6 5.6163 2.6130 0.1438 10 6 6.3118 1.5348 -0.3819 11 6 7.6942 1.5377 -0.3823 12 6 8.3881 2.6140 0.1401 13 6 7.7036 3.6936 0.6653 14 6 6.3157 3.6994 0.6700 15 16 5.4400 5.0740 1.3395 16 6 6.7709 6.1835 1.8763 17 6 6.1740 7.4280 2.4814 18 1 5.1013 7.5400 2.5377 19 6 6.9973 8.4230 2.9639 20 7 6.4764 9.5088 3.4924 21 14 8.8528 8.2290 2.8671 22 1 9.3427 8.7896 1.5823 23 1 9.4860 8.9548 3.9974 24 1 9.2044 6.7884 2.9448 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5489 2.1253 -1.3968 31 1 1.9981 3.1544 -1.3071 32 1 2.0697 1.5875 -2.1492 33 1 3.7293 3.4513 0.1629 34 1 5.7734 0.6929 -0.7913 35 1 8.2342 0.6972 -0.7926 36 1 9.4680 2.6130 0.1331 37 1 8.2486 4.5326 1.0721 38 1 7.3879 5.6779 2.6191 39 1 7.3852 6.4558 1.0181 40 1 7.0557 10.2091 3.8316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078568664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = -46.456798 kcal Electronic energy + Delta-G solvation = -20632.715551 eV Core-core repulsion = 17537.153370 eV Total energy + Delta-G solvation = -3095.562181 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.75645 -39.59603 -36.48637 -35.95310 -35.25899 -32.31520 -31.44641 -31.21729 -29.86788 -26.32574 -25.10159 -24.17684 -23.77207 -22.18818 -20.75931 -19.48737 -18.79815 -18.11888 -17.97664 -16.75505 -16.66725 -16.17065 -15.91233 -15.53688 -15.24042 -15.04961 -14.94559 -14.66541 -14.43130 -14.36590 -14.01067 -13.61240 -13.18490 -12.98711 -12.82539 -12.70515 -12.59295 -12.44387 -12.21640 -12.11520 -11.78044 -11.74089 -11.61941 -11.52520 -11.02109 -10.94448 -10.76810 -10.58128 -9.33603 -8.41814 -8.24554 -6.52693 0.16791 0.31092 0.66434 1.32509 1.33760 1.43614 1.51904 1.70449 2.00586 2.25743 2.76093 2.91409 3.50139 3.80006 3.85586 3.95247 4.12617 4.30723 4.38570 4.45139 4.49138 4.51175 4.52266 4.60843 4.63313 4.71529 4.85809 4.93295 5.00057 5.10256 5.13765 5.21480 5.23776 5.28270 5.35160 5.42829 5.50720 5.53655 5.98577 6.00250 6.31227 6.51022 6.98293 7.10670 8.73396 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003980 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.458531 B = 7033.895279 C = 8270.862231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.106 4.106 4 H 0.114 0.886 5 C -0.145 4.145 6 C 0.514 3.486 7 O -0.552 6.552 8 N -0.661 5.661 9 C 0.148 3.852 10 C -0.127 4.127 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.127 4.127 15 S -0.141 6.141 16 C 0.037 3.963 17 C -0.533 4.533 18 H 0.044 0.956 19 C 0.026 3.974 20 N -0.934 5.934 21 Si 0.945 3.055 22 H -0.260 1.260 23 H -0.277 1.277 24 H -0.245 1.245 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.418 0.582 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.122 0.878 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.908 -17.998 -10.567 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.127 4.127 4 H 0.132 0.868 5 C -0.202 4.202 6 C 0.304 3.696 7 O -0.430 6.430 8 N -0.305 5.305 9 C 0.047 3.953 10 C -0.148 4.148 11 C -0.127 4.127 12 C -0.136 4.136 13 C -0.156 4.156 14 C -0.243 4.243 15 S 0.104 5.896 16 C -0.111 4.111 17 C -0.572 4.572 18 H 0.062 0.938 19 C -0.175 4.175 20 N -0.572 5.572 21 Si 0.767 3.233 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.169 1.169 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.256 0.744 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.140 0.860 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.763 -18.274 -10.294 21.751 hybrid contribution 1.798 0.870 0.368 2.031 sum -3.964 -17.404 -9.926 20.424 Atomic orbital electron populations 1.21822 0.93410 1.02602 1.02826 1.21319 0.97052 0.93188 1.02423 1.21463 0.88003 1.00651 1.02562 0.86800 1.21866 1.03962 1.00102 0.94257 1.21598 0.91738 0.82235 0.74000 1.90622 1.70900 1.32270 1.49225 1.43726 1.04306 1.10632 1.71871 1.17452 0.83230 0.95010 0.99620 1.21405 0.95199 0.97985 1.00255 1.21390 0.93096 0.99049 0.99179 1.21342 1.01237 0.92703 0.98328 1.21265 0.91950 1.00485 1.01875 1.21849 0.97453 0.99196 1.05756 1.84959 1.17343 1.13686 1.73622 1.21469 0.94772 0.95739 0.99106 1.20572 0.94272 1.01101 1.41255 0.93792 1.25798 1.04457 0.93918 0.93306 1.69996 1.38113 1.08673 1.40462 0.85736 0.78490 0.80085 0.78980 1.18413 1.20190 1.16889 0.91136 0.91885 0.92151 0.91900 0.92709 0.88688 0.91929 0.92231 0.74425 0.83801 0.82552 0.82908 0.85990 0.93620 0.93465 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.10 -1.75 4.75 30.59 0.15 -1.60 16 3 C -0.11 -1.91 2.72 -11.54 -0.03 -1.94 16 4 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 5 C -0.14 -2.04 8.85 71.98 0.64 -1.41 16 6 C 0.51 13.52 6.96 87.66 0.61 14.13 16 7 O -0.55 -17.55 13.09 -3.08 -0.04 -17.59 16 8 N -0.66 -18.69 5.03 -303.01 -1.52 -20.21 16 9 C 0.15 4.80 6.44 38.22 0.25 5.05 16 10 C -0.13 -3.75 8.72 22.37 0.20 -3.55 16 11 C -0.11 -2.65 10.04 22.29 0.22 -2.43 16 12 C -0.12 -3.04 10.04 22.27 0.22 -2.81 16 13 C -0.13 -4.33 9.36 22.39 0.21 -4.12 16 14 C -0.13 -4.55 6.12 22.71 0.14 -4.41 16 15 S -0.14 -5.72 20.55 -56.49 -1.16 -6.89 16 16 C 0.04 1.73 3.16 71.24 0.23 1.95 16 17 C -0.53 -29.99 9.68 25.60 0.25 -29.74 16 18 H 0.04 2.75 7.96 -2.91 -0.02 2.73 16 19 C 0.03 1.47 5.47 84.65 0.46 1.94 16 20 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 21 Si 0.95 41.49 27.47 68.60 1.88 43.37 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.25 -9.92 6.54 99.48 0.65 -9.27 16 25 H 0.07 0.68 6.56 -2.39 -0.02 0.66 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 30 H 0.09 0.95 6.56 -2.39 -0.02 0.93 16 31 H 0.06 0.91 7.70 -2.39 -0.02 0.89 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.42 10.97 7.25 -92.71 -0.67 10.30 16 34 H 0.14 4.27 5.79 -2.91 -0.02 4.25 16 35 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 36 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.12 4.12 5.88 -2.91 -0.02 4.10 16 38 H 0.05 2.08 6.81 -2.39 -0.02 2.07 16 39 H 0.05 2.09 7.18 -2.39 -0.02 2.08 16 40 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -67.42 337.61 4.01 -63.41 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.32 Total: 23.81 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 4.23 Total: -30.03 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -1.22 Total: -76.09 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.04 Total: -17.59 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.88 Total: 43.37 kcal Atomic # 16 Polarization: -5.72 SS G_CDS: -1.16 Total: -6.89 kcal Total: -67.42 4.01 -63.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078568664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.957 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds