Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.09002 * 109.47013 * 54.99547 * 3 2 1 5 5 C 1.53004 * 109.46892 * 174.99998 * 3 2 1 6 6 N 1.46502 * 109.46967 * 294.99725 * 3 2 1 7 7 C 1.46499 * 119.99811 * 300.00387 * 6 3 2 8 8 C 1.34774 * 120.00191 * 120.00304 * 6 3 2 9 9 O 1.21556 * 119.99619 * 354.79695 * 8 6 3 10 10 C 1.47857 * 120.00448 * 174.80325 * 8 6 3 11 11 C 1.39680 * 120.09488 * 335.41769 * 10 8 6 12 12 C 1.38044 * 120.03504 * 179.97438 * 11 10 8 13 13 C 1.38182 * 120.24347 * 359.74468 * 12 11 10 14 14 C 1.39183 * 120.19900 * 0.51339 * 13 12 11 15 15 S 1.76206 * 120.01469 * 179.76260 * 14 13 12 16 16 C 1.76197 * 100.00175 * 265.72933 * 15 14 13 17 17 H 1.07999 * 119.99657 * 5.22056 * 16 15 14 18 18 C 1.38732 * 119.99864 * 185.22158 * 16 15 14 19 19 N 1.31618 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99598 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47185 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46959 * 119.99976 * 20 18 16 23 23 H 1.48494 * 109.46791 * 239.99709 * 20 18 16 24 24 C 1.38873 * 119.96159 * 359.48402 * 14 13 12 25 25 H 1.09005 * 109.46812 * 60.00014 * 1 2 3 26 26 H 1.09001 * 109.47559 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47011 * 300.00592 * 1 2 3 28 28 H 1.08999 * 109.47011 * 239.99408 * 2 1 3 29 29 H 1.08999 * 109.46633 * 119.99567 * 2 1 3 30 30 H 1.09003 * 109.47171 * 59.99745 * 5 3 2 31 31 H 1.08998 * 109.46475 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46946 * 299.99467 * 5 3 2 33 33 H 1.09002 * 109.46885 * 275.81087 * 7 6 3 34 34 H 1.09001 * 109.47659 * 35.81383 * 7 6 3 35 35 H 1.08999 * 109.46945 * 155.81829 * 7 6 3 36 36 H 1.07993 * 119.98262 * 359.95581 * 11 10 8 37 37 H 1.07995 * 119.87823 * 180.02562 * 12 11 10 38 38 H 1.08001 * 119.89810 * 180.25434 * 13 12 11 39 39 H 0.96997 * 119.99857 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.11885 * 180.27524 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6525 2.0974 -1.2519 7 6 2.1140 1.5588 -2.5337 8 6 0.8715 3.1955 -1.2243 9 8 0.4110 3.5874 -0.1698 10 6 0.5746 3.9233 -2.4766 11 6 1.4485 3.8339 -3.5626 12 6 1.1699 4.5135 -4.7314 13 6 0.0248 5.2800 -4.8348 14 6 -0.8501 5.3804 -3.7570 15 16 -2.3057 6.3642 -3.8920 16 6 -1.7156 7.8787 -3.2119 17 1 -0.6741 7.9813 -2.9452 18 6 -2.5889 8.9394 -3.0191 19 7 -3.8580 8.8144 -3.3447 20 14 -1.9630 10.5453 -2.2987 21 1 -0.5090 10.4295 -2.0203 22 1 -2.1959 11.6464 -3.2676 23 1 -2.6869 10.8363 -1.0353 24 6 -0.5781 4.7002 -2.5772 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9995 0.9051 -0.7161 31 1 3.9281 2.4719 0.1262 32 1 3.8532 0.9570 1.0572 33 1 3.1118 1.9404 -2.7500 34 1 2.1447 0.4705 -2.4806 35 1 1.4287 1.8648 -3.3242 36 1 2.3427 3.2330 -3.4878 37 1 1.8470 4.4423 -5.5697 38 1 -0.1898 5.8061 -5.7533 39 1 -4.4685 9.5562 -3.2102 40 1 -1.2575 4.7727 -1.7408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079400957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -4.771492 kcal Electronic energy + Delta-G solvation = -21015.930570 eV Core-core repulsion = 17922.176000 eV Total energy + Delta-G solvation = -3093.754570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44308 -38.08083 -36.65993 -33.61935 -32.49119 -30.84471 -30.58763 -29.76386 -27.24043 -25.55056 -24.39157 -23.28193 -22.31100 -20.89336 -19.40198 -18.01365 -17.06433 -16.71188 -15.96858 -15.60817 -14.92559 -14.83458 -14.55889 -14.02270 -13.82546 -13.74221 -13.51383 -13.32170 -13.17229 -12.88156 -12.63374 -12.45533 -12.07353 -11.93484 -11.37122 -11.28797 -11.15354 -11.14033 -11.08887 -11.03912 -10.84657 -10.64768 -9.90840 -9.70045 -9.15013 -8.94107 -8.76801 -8.52840 -7.98665 -6.69929 -6.27205 -4.00976 1.23004 1.68061 2.89468 3.02368 3.20959 3.24425 3.30585 3.49556 4.07082 4.26050 4.43090 4.75957 4.81590 4.86358 4.90737 5.09407 5.17017 5.21031 5.22817 5.29076 5.36390 5.40135 5.49041 5.49187 5.61989 5.70073 5.77173 5.79448 5.89463 5.92144 5.97005 6.03054 6.18173 6.28286 6.49871 6.62138 6.67183 6.94938 7.21578 7.37489 7.59888 8.27753 8.35083 9.19048 10.79602 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003816 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.713470 B = 7335.317968 C = 7666.098546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.133 3.867 4 H 0.102 0.898 5 C -0.160 4.160 6 N -0.609 5.609 7 C 0.064 3.936 8 C 0.565 3.435 9 O -0.533 6.533 10 C -0.153 4.153 11 C -0.107 4.107 12 C -0.144 4.144 13 C -0.057 4.057 14 C -0.107 4.107 15 S -0.037 6.037 16 C -0.518 4.518 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.871 5.871 20 Si 0.921 3.079 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.278 1.278 24 C -0.021 4.021 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.269 0.731 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.922 -17.158 1.166 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.030 3.970 4 H 0.120 0.880 5 C -0.218 4.218 6 N -0.343 5.343 7 C -0.078 4.078 8 C 0.355 3.645 9 O -0.410 6.410 10 C -0.158 4.158 11 C -0.126 4.126 12 C -0.163 4.163 13 C -0.078 4.078 14 C -0.217 4.217 15 S 0.198 5.802 16 C -0.666 4.666 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.506 5.506 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.043 4.043 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.079 0.921 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.398 -17.087 1.317 21.152 hybrid contribution 1.670 1.237 0.841 2.242 sum 14.068 -15.850 2.157 21.302 Atomic orbital electron populations 1.21718 0.95186 1.01211 1.02647 1.21881 0.96897 0.95942 1.02260 1.21136 0.94738 0.93434 0.87712 0.88008 1.22133 0.95131 1.02469 1.02116 1.47708 1.51327 1.28305 1.06937 1.22366 0.99905 0.99410 0.86147 1.18520 0.77390 0.79599 0.89009 1.90763 1.51138 1.66990 1.32126 1.19822 0.98721 1.03177 0.94063 1.21886 0.99273 0.98772 0.92650 1.21093 0.98198 0.99127 0.97923 1.21956 0.92175 0.95078 0.98556 1.22823 1.02853 1.01262 0.94804 1.83572 1.07899 1.07437 1.81341 1.22887 0.97905 0.96939 1.48839 0.90563 1.24998 0.94541 0.99031 0.94987 1.69995 1.02996 1.32356 1.45266 0.86070 0.79123 0.81414 0.78732 1.19479 1.20479 1.20423 1.21897 0.94318 0.90847 0.97191 0.92594 0.92910 0.92459 0.91690 0.90976 0.92364 0.92200 0.91476 0.92374 0.91496 0.88992 0.84557 0.85922 0.85183 0.92133 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.80 37.16 0.36 -1.18 16 2 C -0.13 -1.13 5.35 -26.73 -0.14 -1.27 16 3 C 0.13 1.40 2.64 -67.93 -0.18 1.22 16 4 H 0.10 1.32 6.91 -51.93 -0.36 0.97 16 5 C -0.16 -1.32 9.19 37.16 0.34 -0.98 16 6 N -0.61 -7.37 2.21 -175.04 -0.39 -7.76 16 7 C 0.06 0.56 7.78 59.85 0.47 1.02 16 8 C 0.56 9.39 7.49 -12.33 -0.09 9.29 16 9 O -0.53 -10.81 15.94 5.32 0.08 -10.72 16 10 C -0.15 -2.63 5.49 -105.00 -0.58 -3.21 16 11 C -0.11 -1.49 7.53 -39.11 -0.29 -1.79 16 12 C -0.14 -2.06 10.02 -39.67 -0.40 -2.46 16 13 C -0.06 -1.02 9.79 -39.25 -0.38 -1.41 16 14 C -0.11 -2.31 5.45 -39.00 -0.21 -2.52 16 15 S -0.04 -0.96 21.41 -107.50 -2.30 -3.26 16 16 C -0.52 -14.85 9.46 30.92 0.29 -14.56 16 17 H 0.08 2.19 7.79 -52.49 -0.41 1.78 16 18 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 19 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 20 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 C -0.02 -0.43 9.34 -38.92 -0.36 -0.79 16 25 H 0.05 0.68 7.75 -51.93 -0.40 0.27 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.48 6.49 -51.93 -0.34 0.15 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.41 7.13 -51.93 -0.37 0.04 16 34 H 0.07 0.46 6.36 -51.93 -0.33 0.13 16 35 H 0.09 0.86 5.11 -51.93 -0.27 0.60 16 36 H 0.14 1.42 4.43 -52.49 -0.23 1.18 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.14 3.02 7.84 -52.49 -0.41 2.61 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -32.82 341.12 -8.64 -41.46 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.61 Total: -0.02 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.28 Total: -16.64 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.35 Total: -32.70 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.30 Total: -3.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.82 -8.64 -41.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079400957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.685 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds