Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.09002 * 109.47013 * 54.99547 * 3 2 1 5 5 C 1.53004 * 109.46892 * 174.99998 * 3 2 1 6 6 N 1.46502 * 109.46967 * 294.99725 * 3 2 1 7 7 C 1.46499 * 119.99811 * 300.00387 * 6 3 2 8 8 C 1.34774 * 120.00191 * 120.00304 * 6 3 2 9 9 O 1.21556 * 119.99619 * 354.79695 * 8 6 3 10 10 C 1.47857 * 120.00448 * 174.80325 * 8 6 3 11 11 C 1.39680 * 120.09488 * 335.41769 * 10 8 6 12 12 C 1.38044 * 120.03504 * 179.97438 * 11 10 8 13 13 C 1.38182 * 120.24347 * 359.74468 * 12 11 10 14 14 C 1.39183 * 120.19900 * 0.51339 * 13 12 11 15 15 S 1.76206 * 120.01469 * 179.76260 * 14 13 12 16 16 C 1.76197 * 100.00175 * 265.72933 * 15 14 13 17 17 H 1.07999 * 119.99657 * 5.22056 * 16 15 14 18 18 C 1.38732 * 119.99864 * 185.22158 * 16 15 14 19 19 N 1.31618 * 120.00190 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99598 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47185 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46959 * 119.99976 * 20 18 16 23 23 H 1.48494 * 109.46791 * 239.99709 * 20 18 16 24 24 C 1.38873 * 119.96159 * 359.48402 * 14 13 12 25 25 H 1.09005 * 109.46812 * 60.00014 * 1 2 3 26 26 H 1.09001 * 109.47559 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47011 * 300.00592 * 1 2 3 28 28 H 1.08999 * 109.47011 * 239.99408 * 2 1 3 29 29 H 1.08999 * 109.46633 * 119.99567 * 2 1 3 30 30 H 1.09003 * 109.47171 * 59.99745 * 5 3 2 31 31 H 1.08998 * 109.46475 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46946 * 299.99467 * 5 3 2 33 33 H 1.09002 * 109.46885 * 275.81087 * 7 6 3 34 34 H 1.09001 * 109.47659 * 35.81383 * 7 6 3 35 35 H 1.08999 * 109.46945 * 155.81829 * 7 6 3 36 36 H 1.07993 * 119.98262 * 359.95581 * 11 10 8 37 37 H 1.07995 * 119.87823 * 180.02562 * 12 11 10 38 38 H 1.08001 * 119.89810 * 180.25434 * 13 12 11 39 39 H 0.96997 * 119.99857 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.11885 * 180.27524 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5649 1.4442 0.1257 6 7 1.6525 2.0974 -1.2519 7 6 2.1140 1.5588 -2.5337 8 6 0.8715 3.1955 -1.2243 9 8 0.4110 3.5874 -0.1698 10 6 0.5746 3.9233 -2.4766 11 6 1.4485 3.8339 -3.5626 12 6 1.1699 4.5135 -4.7314 13 6 0.0248 5.2800 -4.8348 14 6 -0.8501 5.3804 -3.7570 15 16 -2.3057 6.3642 -3.8920 16 6 -1.7156 7.8787 -3.2119 17 1 -0.6741 7.9813 -2.9452 18 6 -2.5889 8.9394 -3.0191 19 7 -3.8580 8.8144 -3.3447 20 14 -1.9630 10.5453 -2.2987 21 1 -0.5090 10.4295 -2.0203 22 1 -2.1959 11.6464 -3.2676 23 1 -2.6869 10.8363 -1.0353 24 6 -0.5781 4.7002 -2.5772 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9995 0.9051 -0.7161 31 1 3.9281 2.4719 0.1262 32 1 3.8532 0.9570 1.0572 33 1 3.1118 1.9404 -2.7500 34 1 2.1447 0.4705 -2.4806 35 1 1.4287 1.8648 -3.3242 36 1 2.3427 3.2330 -3.4878 37 1 1.8470 4.4423 -5.5697 38 1 -0.1898 5.8061 -5.7533 39 1 -4.4685 9.5562 -3.2102 40 1 -1.2575 4.7727 -1.7408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079400957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -24.281728 kcal Electronic energy + Delta-G solvation = -21016.776598 eV Core-core repulsion = 17922.176000 eV Total energy + Delta-G solvation = -3094.600597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62555 -39.36400 -37.78577 -34.67813 -34.60309 -32.05835 -31.88977 -30.66830 -28.13131 -27.75187 -25.40875 -24.28783 -23.69238 -21.98713 -20.46365 -19.86740 -18.49976 -17.92420 -17.11380 -16.95395 -16.70139 -16.31790 -15.85798 -15.27844 -14.90781 -14.72269 -14.68490 -14.58892 -14.32171 -14.01529 -13.82212 -13.49023 -13.28907 -13.12875 -12.99842 -12.74731 -12.68086 -12.51876 -12.24190 -12.11340 -11.90260 -11.72881 -11.61843 -11.27100 -11.06009 -10.63972 -10.02263 -9.66199 -9.63204 -8.82071 -8.41363 -6.21335 -0.14059 0.24347 1.27672 1.34446 1.44223 1.60576 1.79653 1.93523 2.22434 2.74433 2.91486 3.38895 3.45041 3.80707 3.94649 3.97595 4.07788 4.14912 4.27146 4.37904 4.46837 4.48560 4.56041 4.62637 4.70047 4.71375 4.83564 4.90424 4.94581 5.00034 5.05419 5.16612 5.22681 5.28857 5.31699 5.36248 5.38130 5.50235 5.63358 5.88094 6.13896 6.29127 6.99115 7.07499 8.65905 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.003816 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.713470 B = 7335.317968 C = 7666.098546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.125 3.875 4 H 0.066 0.934 5 C -0.152 4.152 6 N -0.595 5.595 7 C 0.049 3.951 8 C 0.557 3.443 9 O -0.588 6.588 10 C -0.156 4.156 11 C -0.079 4.079 12 C -0.121 4.121 13 C -0.064 4.064 14 C -0.129 4.129 15 S -0.094 6.094 16 C -0.537 4.537 17 H 0.064 0.936 18 C 0.021 3.979 19 N -0.905 5.905 20 Si 0.992 3.008 21 H -0.268 1.268 22 H -0.263 1.263 23 H -0.272 1.272 24 C -0.048 4.048 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.188 0.812 37 H 0.178 0.822 38 H 0.135 0.865 39 H 0.274 0.726 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.194 -19.210 0.013 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.022 3.978 4 H 0.084 0.916 5 C -0.210 4.210 6 N -0.326 5.326 7 C -0.092 4.092 8 C 0.347 3.653 9 O -0.469 6.469 10 C -0.161 4.161 11 C -0.097 4.097 12 C -0.141 4.141 13 C -0.085 4.085 14 C -0.241 4.241 15 S 0.140 5.860 16 C -0.685 4.685 17 H 0.083 0.917 18 C -0.184 4.184 19 N -0.542 5.542 20 Si 0.813 3.187 21 H -0.192 1.192 22 H -0.187 1.187 23 H -0.197 1.197 24 C -0.070 4.070 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.205 0.795 37 H 0.195 0.805 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.699 -19.192 0.134 25.440 hybrid contribution 0.447 1.654 1.190 2.086 sum 17.146 -17.538 1.324 24.562 Atomic orbital electron populations 1.21723 0.97069 1.01646 1.00425 1.21868 0.95049 0.94665 1.04476 1.21326 0.96611 0.93977 0.85844 0.91608 1.22077 0.92532 1.02211 1.04146 1.47794 1.49255 1.26409 1.09168 1.22719 1.01057 1.01472 0.83907 1.18556 0.77989 0.80816 0.87979 1.90736 1.53573 1.68870 1.33729 1.19947 0.97897 1.02521 0.95729 1.22469 0.99329 0.97205 0.90720 1.21609 0.96713 0.96291 0.99455 1.22079 0.92960 0.96064 0.97416 1.22477 1.02334 1.02349 0.96906 1.83411 1.12861 1.08238 1.81447 1.23094 0.97585 0.98467 1.49312 0.91746 1.25989 0.94662 1.02683 0.95095 1.70106 1.04203 1.33697 1.46151 0.85010 0.78455 0.76938 0.78259 1.19248 1.18738 1.19709 1.21561 0.95949 0.93436 0.96062 0.94920 0.91056 0.94697 0.89184 0.88880 0.89808 0.93637 0.89850 0.89099 0.88531 0.89473 0.79538 0.80509 0.84726 0.91646 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.80 71.98 0.71 -2.31 16 2 C -0.12 -1.74 5.35 30.59 0.16 -1.57 16 3 C 0.12 2.41 2.64 44.99 0.12 2.53 16 4 H 0.07 1.77 6.91 -2.39 -0.02 1.75 16 5 C -0.15 -1.93 9.19 71.98 0.66 -1.27 16 6 N -0.59 -13.13 2.21 -825.97 -1.83 -14.96 16 7 C 0.05 0.60 7.78 127.77 0.99 1.59 16 8 C 0.56 18.75 7.49 86.79 0.65 19.40 16 9 O -0.59 -25.58 15.94 -3.89 -0.06 -25.64 16 10 C -0.16 -5.34 5.49 -20.11 -0.11 -5.45 16 11 C -0.08 -1.90 7.53 22.57 0.17 -1.73 16 12 C -0.12 -2.98 10.02 22.21 0.22 -2.76 16 13 C -0.06 -2.27 9.79 22.48 0.22 -2.05 16 14 C -0.13 -5.88 5.45 22.65 0.12 -5.75 16 15 S -0.09 -5.26 21.41 -56.49 -1.21 -6.47 16 16 C -0.54 -32.46 9.46 67.94 0.64 -31.81 16 17 H 0.06 3.89 7.79 -2.91 -0.02 3.87 16 18 C 0.02 1.23 5.49 84.84 0.47 1.70 16 19 N -0.91 -55.45 13.22 21.64 0.29 -55.16 16 20 Si 0.99 45.78 29.55 68.60 2.03 47.81 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 C -0.05 -2.13 9.34 22.70 0.21 -1.92 16 25 H 0.03 0.79 7.75 -2.38 -0.02 0.77 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.87 6.49 -2.39 -0.02 0.85 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.67 7.67 -2.39 -0.02 0.65 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.62 7.13 -2.39 -0.02 0.60 16 34 H 0.10 0.71 6.36 -2.39 -0.02 0.70 16 35 H 0.09 1.20 5.11 -2.39 -0.01 1.19 16 36 H 0.19 2.62 4.43 -2.91 -0.01 2.61 16 37 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.10 4.86 7.84 -2.91 -0.02 4.84 16 Total: -1.00 -80.84 341.12 5.49 -75.35 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.03 Total: 10.50 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 5.24 Total: -31.43 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.54 Total: -70.12 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.06 Total: -25.64 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -1.21 Total: -6.47 kcal Total: -80.84 5.49 -75.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079400957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.073 kcal (2) G-P(sol) polarization free energy of solvation -80.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds