Wall clock time and date at job start Tue Mar 31 2020 08:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46717 * 2 1 4 4 C 1.53000 * 109.47024 * 240.00029 * 2 1 3 5 5 C 1.50692 * 109.46996 * 65.00275 * 4 2 1 6 6 O 1.21277 * 120.00638 * 359.97438 * 5 4 2 7 7 C 1.46986 * 119.99654 * 180.02562 * 5 4 2 8 8 C 1.39944 * 120.19733 * 359.97438 * 7 5 4 9 9 C 1.37768 * 119.85198 * 180.29989 * 8 7 5 10 10 C 1.38523 * 120.24642 * 359.42737 * 9 8 7 11 11 C 1.38218 * 120.40314 * 0.59936 * 10 9 8 12 12 C 1.38284 * 120.14255 * 359.68102 * 11 10 9 13 13 F 1.35096 * 120.12582 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46971 * 119.99555 * 2 1 3 15 15 O 1.21297 * 119.99571 * 120.00071 * 14 2 1 16 16 N 1.34771 * 120.00097 * 300.00253 * 14 2 1 17 17 C 1.46496 * 120.00170 * 359.97438 * 16 14 2 18 18 C 1.37103 * 119.99860 * 179.97438 * 16 14 2 19 19 H 1.08005 * 119.99534 * 22.60696 * 18 16 14 20 20 C 1.38939 * 120.00321 * 202.60618 * 18 16 14 21 21 N 1.31414 * 120.00114 * 10.42182 * 20 18 16 22 22 Si 1.86808 * 120.00396 * 190.42221 * 20 18 16 23 23 H 1.48491 * 109.47105 * 89.99767 * 22 20 18 24 24 H 1.48499 * 109.46954 * 210.00076 * 22 20 18 25 25 H 1.48500 * 109.46480 * 329.99822 * 22 20 18 26 26 H 1.09007 * 109.47525 * 299.99845 * 1 2 3 27 27 H 1.09005 * 109.47395 * 59.99972 * 1 2 3 28 28 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47128 * 304.99691 * 4 2 1 30 30 H 1.09004 * 109.46379 * 184.99753 * 4 2 1 31 31 H 1.08000 * 120.07606 * 0.02897 * 8 7 5 32 32 H 1.08000 * 119.87550 * 179.72613 * 9 8 7 33 33 H 1.08006 * 119.79342 * 180.30165 * 10 9 8 34 34 H 1.07999 * 119.93108 * 179.70055 * 11 10 9 35 35 H 1.08999 * 109.46947 * 93.39190 * 17 16 14 36 36 H 1.09004 * 109.47107 * 213.38672 * 17 16 14 37 37 H 1.08991 * 109.47177 * 333.38611 * 17 16 14 38 38 H 0.96999 * 120.00361 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 8 1.0110 1.0870 -2.3633 7 6 2.0155 -0.4326 -3.8109 8 6 2.7424 -1.6208 -3.9464 9 6 3.0947 -2.0699 -5.2003 10 6 2.7220 -1.3561 -6.3274 11 6 2.0044 -0.1811 -6.2056 12 6 1.6471 0.2879 -4.9548 13 9 0.9453 1.4361 -4.8362 14 6 2.0323 -0.7103 1.2305 15 8 2.7296 -1.6965 1.1193 16 7 1.7066 -0.2498 2.4546 17 6 0.8649 0.9416 2.5889 18 6 2.1632 -0.8964 3.5740 19 1 3.0436 -1.5194 3.5165 20 6 1.4934 -0.7503 4.7825 21 7 0.3167 -0.1661 4.8151 22 14 2.2654 -1.3842 6.3611 23 1 3.0908 -0.3125 6.9735 24 1 1.1952 -1.7872 7.3084 25 1 3.1238 -2.5569 6.0559 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7197 -1.2951 30 1 3.1263 -0.7994 -1.2055 31 1 3.0303 -2.1821 -3.0698 32 1 3.6595 -2.9845 -5.3050 33 1 2.9979 -1.7176 -7.3071 34 1 1.7220 0.3718 -7.0893 35 1 -0.1785 0.6405 2.6826 36 1 1.1632 1.4990 3.4769 37 1 0.9836 1.5716 1.7075 38 1 -0.1508 -0.0637 5.6588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079840270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:21 Heat of formation + Delta-G solvation = -81.824369 kcal Electronic energy + Delta-G solvation = -23130.937871 eV Core-core repulsion = 19467.628861 eV Total energy + Delta-G solvation = -3663.309010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.01733 -40.09436 -38.80804 -38.07136 -34.74327 -33.58525 -32.05071 -31.34374 -30.74142 -27.90314 -26.06301 -24.96404 -24.18981 -23.00382 -22.08999 -19.90358 -18.42207 -17.84262 -16.96934 -16.75439 -16.48696 -15.97627 -15.82528 -15.04057 -14.88664 -14.68039 -14.32792 -14.17402 -13.85236 -13.77844 -13.29242 -13.18668 -12.57053 -12.50226 -12.29870 -12.04005 -11.67178 -11.58612 -11.47756 -11.19251 -11.07515 -10.84961 -10.58338 -10.40156 -10.26783 -10.16594 -9.49477 -9.40672 -9.02199 -8.97115 -8.28019 -7.64399 -6.26980 -3.84923 0.36144 0.89519 2.32968 3.18175 3.26511 3.31843 3.40425 3.79206 3.93754 4.02568 4.18970 4.38754 4.60179 4.80935 4.95793 4.97290 5.08932 5.15500 5.35694 5.49512 5.54342 5.71488 5.73374 5.86071 5.88895 6.01018 6.06727 6.08414 6.17870 6.43515 6.48338 6.52207 6.60428 6.76089 6.96141 7.31093 7.59255 7.59751 8.16946 8.51969 9.21768 9.47257 10.02437 10.76049 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.003354 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.491142 B = 8346.317227 C = 9003.698454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.137 4.137 5 C 0.391 3.609 6 O -0.437 6.437 7 C -0.200 4.200 8 C -0.042 4.042 9 C -0.145 4.145 10 C -0.064 4.064 11 C -0.173 4.173 12 C 0.152 3.848 13 F -0.118 7.118 14 C 0.451 3.549 15 O -0.596 6.596 16 N -0.444 5.444 17 C 0.111 3.889 18 C -0.306 4.306 19 H 0.098 0.902 20 C 0.030 3.970 21 N -0.884 5.884 22 Si 0.927 3.073 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -0.368 -19.418 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.112 4.112 3 H 0.104 0.896 4 C -0.175 4.175 5 C 0.268 3.732 6 O -0.311 6.311 7 C -0.202 4.202 8 C -0.061 4.061 9 C -0.163 4.163 10 C -0.082 4.082 11 C -0.192 4.192 12 C 0.132 3.868 13 F -0.096 7.096 14 C 0.239 3.761 15 O -0.481 6.481 16 N -0.161 5.161 17 C -0.033 4.033 18 C -0.434 4.434 19 H 0.116 0.884 20 C -0.173 4.173 21 N -0.523 5.523 22 Si 0.754 3.246 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.165 0.835 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.182 -0.185 -19.204 19.329 hybrid contribution 0.083 -0.045 0.827 0.833 sum 2.266 -0.230 -18.377 18.518 Atomic orbital electron populations 1.22115 0.93652 1.02167 1.03594 1.20891 0.97475 1.00007 0.92835 0.89640 1.21753 1.03834 1.00425 0.91452 1.22550 0.76437 0.85011 0.89238 1.90541 1.29769 1.22009 1.88772 1.20849 1.05955 0.98786 0.94636 1.21552 0.92638 0.92986 0.98890 1.21237 1.01837 1.01205 0.92071 1.21250 0.94472 0.93041 0.99469 1.21157 1.03002 0.98981 0.96051 1.18009 0.92232 0.82924 0.93600 1.91585 1.75264 1.45990 1.96791 1.19956 0.85708 0.86243 0.84229 1.90483 1.42738 1.28522 1.86404 1.43532 1.44260 1.23885 1.04462 1.21661 0.95901 0.86981 0.98734 1.19675 1.10453 1.27624 0.85689 0.88393 1.25343 0.94975 0.97239 0.99752 1.69999 1.12119 1.43290 1.26926 0.85917 0.78568 0.79196 0.80958 1.20429 1.20973 1.19398 0.90597 0.91576 0.93089 0.87828 0.87666 0.83463 0.84604 0.84673 0.84308 0.91899 0.91682 0.95070 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.54 37.16 0.32 -2.58 16 2 C -0.09 -1.74 1.56 -91.77 -0.14 -1.88 16 3 H 0.09 1.62 7.22 -51.93 -0.38 1.24 16 4 C -0.14 -2.19 3.13 -27.89 -0.09 -2.28 16 5 C 0.39 5.93 6.83 -30.77 -0.21 5.72 16 6 O -0.44 -7.75 12.95 5.56 0.07 -7.67 16 7 C -0.20 -2.53 5.87 -105.01 -0.62 -3.15 16 8 C -0.04 -0.42 9.47 -39.11 -0.37 -0.79 16 9 C -0.15 -1.12 10.02 -39.65 -0.40 -1.51 16 10 C -0.06 -0.46 10.03 -39.48 -0.40 -0.86 16 11 C -0.17 -1.56 10.01 -39.57 -0.40 -1.95 16 12 C 0.15 1.88 7.29 -38.86 -0.28 1.60 16 13 F -0.12 -1.72 15.55 2.25 0.04 -1.69 16 14 C 0.45 10.98 7.03 -10.99 -0.08 10.90 16 15 O -0.60 -16.03 15.61 5.54 0.09 -15.95 16 16 N -0.44 -11.54 3.02 -122.20 -0.37 -11.91 16 17 C 0.11 2.56 7.04 59.84 0.42 2.98 16 18 C -0.31 -8.64 9.29 -14.93 -0.14 -8.77 16 19 H 0.10 2.87 7.40 -52.48 -0.39 2.48 16 20 C 0.03 0.80 5.14 -17.47 -0.09 0.71 16 21 N -0.88 -23.81 10.56 55.49 0.59 -23.22 16 22 Si 0.93 20.95 29.57 -169.99 -5.03 15.93 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.08 1.44 4.59 -51.93 -0.24 1.20 16 27 H 0.07 1.15 5.95 -51.93 -0.31 0.84 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 1.59 8.09 -51.93 -0.42 1.17 16 30 H 0.11 1.62 7.90 -51.93 -0.41 1.21 16 31 H 0.15 1.30 7.05 -52.49 -0.37 0.93 16 32 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.06 1.50 6.50 -51.93 -0.34 1.16 16 36 H 0.06 1.57 7.13 -51.93 -0.37 1.20 16 37 H 0.03 0.62 5.75 -51.93 -0.30 0.32 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -32.68 318.07 -6.63 -39.32 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.34 Total: 2.28 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.47 Total: -1.88 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.22 Total: -35.14 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.16 Total: -23.62 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.68 -6.63 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079840270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.508 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds