Wall clock time and date at job start Tue Mar 31 2020 08:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46717 * 2 1 4 4 C 1.53000 * 109.47024 * 240.00029 * 2 1 3 5 5 C 1.50692 * 109.46996 * 65.00275 * 4 2 1 6 6 O 1.21277 * 120.00638 * 359.97438 * 5 4 2 7 7 C 1.46986 * 119.99654 * 180.02562 * 5 4 2 8 8 C 1.39944 * 120.19733 * 359.97438 * 7 5 4 9 9 C 1.37768 * 119.85198 * 180.29989 * 8 7 5 10 10 C 1.38523 * 120.24642 * 359.42737 * 9 8 7 11 11 C 1.38218 * 120.40314 * 0.59936 * 10 9 8 12 12 C 1.38284 * 120.14255 * 359.68102 * 11 10 9 13 13 F 1.35096 * 120.12582 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46971 * 119.99555 * 2 1 3 15 15 O 1.21297 * 119.99571 * 120.00071 * 14 2 1 16 16 N 1.34771 * 120.00097 * 300.00253 * 14 2 1 17 17 C 1.46496 * 120.00170 * 359.97438 * 16 14 2 18 18 C 1.37103 * 119.99860 * 179.97438 * 16 14 2 19 19 H 1.08005 * 119.99534 * 22.60696 * 18 16 14 20 20 C 1.38939 * 120.00321 * 202.60618 * 18 16 14 21 21 N 1.31414 * 120.00114 * 10.42182 * 20 18 16 22 22 Si 1.86808 * 120.00396 * 190.42221 * 20 18 16 23 23 H 1.48491 * 109.47105 * 89.99767 * 22 20 18 24 24 H 1.48499 * 109.46954 * 210.00076 * 22 20 18 25 25 H 1.48500 * 109.46480 * 329.99822 * 22 20 18 26 26 H 1.09007 * 109.47525 * 299.99845 * 1 2 3 27 27 H 1.09005 * 109.47395 * 59.99972 * 1 2 3 28 28 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47128 * 304.99691 * 4 2 1 30 30 H 1.09004 * 109.46379 * 184.99753 * 4 2 1 31 31 H 1.08000 * 120.07606 * 0.02897 * 8 7 5 32 32 H 1.08000 * 119.87550 * 179.72613 * 9 8 7 33 33 H 1.08006 * 119.79342 * 180.30165 * 10 9 8 34 34 H 1.07999 * 119.93108 * 179.70055 * 11 10 9 35 35 H 1.08999 * 109.46947 * 93.39190 * 17 16 14 36 36 H 1.09004 * 109.47107 * 213.38672 * 17 16 14 37 37 H 1.08991 * 109.47177 * 333.38611 * 17 16 14 38 38 H 0.96999 * 120.00361 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 8 1.0110 1.0870 -2.3633 7 6 2.0155 -0.4326 -3.8109 8 6 2.7424 -1.6208 -3.9464 9 6 3.0947 -2.0699 -5.2003 10 6 2.7220 -1.3561 -6.3274 11 6 2.0044 -0.1811 -6.2056 12 6 1.6471 0.2879 -4.9548 13 9 0.9453 1.4361 -4.8362 14 6 2.0323 -0.7103 1.2305 15 8 2.7296 -1.6965 1.1193 16 7 1.7066 -0.2498 2.4546 17 6 0.8649 0.9416 2.5889 18 6 2.1632 -0.8964 3.5740 19 1 3.0436 -1.5194 3.5165 20 6 1.4934 -0.7503 4.7825 21 7 0.3167 -0.1661 4.8151 22 14 2.2654 -1.3842 6.3611 23 1 3.0908 -0.3125 6.9735 24 1 1.1952 -1.7872 7.3084 25 1 3.1238 -2.5569 6.0559 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7197 -1.2951 30 1 3.1263 -0.7994 -1.2055 31 1 3.0303 -2.1821 -3.0698 32 1 3.6595 -2.9845 -5.3050 33 1 2.9979 -1.7176 -7.3071 34 1 1.7220 0.3718 -7.0893 35 1 -0.1785 0.6405 2.6826 36 1 1.1632 1.4990 3.4769 37 1 0.9836 1.5716 1.7075 38 1 -0.1508 -0.0637 5.6588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079840270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:20 Heat of formation + Delta-G solvation = -100.869457 kcal Electronic energy + Delta-G solvation = -23131.763728 eV Core-core repulsion = 19467.628861 eV Total energy + Delta-G solvation = -3664.134867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.96974 -41.35076 -40.31343 -39.18225 -36.74050 -35.21388 -33.53953 -32.73023 -31.46658 -29.30793 -27.92805 -26.85621 -25.26661 -24.14901 -23.24677 -21.12223 -20.05804 -18.95998 -18.74323 -18.19125 -17.41711 -17.29235 -16.88893 -16.55692 -16.21878 -16.14794 -15.68954 -15.54887 -15.39246 -14.99843 -14.67185 -14.35412 -14.09654 -13.78301 -13.39829 -13.34013 -13.25045 -13.04643 -12.94016 -12.74747 -12.59800 -12.35998 -12.29632 -12.15276 -12.00313 -11.88517 -10.98637 -10.71557 -10.24739 -10.14044 -9.78728 -9.69549 -8.31600 -5.98819 -0.49004 0.18561 1.32731 1.37870 1.41008 1.53628 2.01461 2.26896 2.64004 2.71380 3.09921 3.15997 3.23704 3.61385 3.74415 4.00453 4.02459 4.05046 4.17878 4.29418 4.33720 4.43546 4.63848 4.67397 4.77639 4.80740 4.95142 5.00029 5.03626 5.07026 5.09769 5.22952 5.25729 5.37705 5.41753 5.44787 5.83142 6.09144 6.43705 6.47662 7.15604 7.46903 8.01848 8.69800 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034840 B = 0.003354 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.491142 B = 8346.317227 C = 9003.698454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.089 0.911 4 C -0.131 4.131 5 C 0.398 3.602 6 O -0.472 6.472 7 C -0.226 4.226 8 C -0.047 4.047 9 C -0.137 4.137 10 C -0.047 4.047 11 C -0.171 4.171 12 C 0.122 3.878 13 F -0.140 7.140 14 C 0.444 3.556 15 O -0.626 6.626 16 N -0.461 5.461 17 C 0.124 3.876 18 C -0.346 4.346 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.899 5.899 22 Si 0.992 3.008 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.273 1.273 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 -1.324 -21.202 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.108 0.892 4 C -0.169 4.169 5 C 0.278 3.722 6 O -0.349 6.349 7 C -0.227 4.227 8 C -0.065 4.065 9 C -0.155 4.155 10 C -0.065 4.065 11 C -0.189 4.189 12 C 0.103 3.897 13 F -0.119 7.119 14 C 0.234 3.766 15 O -0.514 6.514 16 N -0.179 5.179 17 C -0.019 4.019 18 C -0.474 4.474 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.537 5.537 22 Si 0.816 3.184 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.198 1.198 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.171 0.829 32 H 0.187 0.813 33 H 0.194 0.806 34 H 0.178 0.822 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.875 -1.130 -21.001 21.227 hybrid contribution -0.098 0.176 1.280 1.296 sum 2.778 -0.954 -19.721 19.938 Atomic orbital electron populations 1.22027 0.92841 1.01994 1.03725 1.20835 0.97977 0.99851 0.91740 0.89250 1.21702 1.04072 1.00498 0.90615 1.22577 0.75383 0.84116 0.90118 1.90522 1.31712 1.23399 1.89265 1.20670 1.08396 1.00525 0.93149 1.21734 0.92236 0.92053 1.00513 1.21671 1.00770 1.01968 0.91065 1.21774 0.92034 0.91459 1.01205 1.21489 1.02475 0.99682 0.95259 1.18426 0.93478 0.82858 0.94980 1.91523 1.76059 1.47298 1.96992 1.20809 0.84661 0.86003 0.85164 1.90443 1.43904 1.29989 1.87059 1.43787 1.44742 1.24658 1.04670 1.21554 0.94708 0.86259 0.99361 1.19687 1.10939 1.29254 0.87479 0.90645 1.26132 0.95256 0.96951 1.02239 1.70078 1.12613 1.43066 1.27980 0.84950 0.77911 0.78627 0.76952 1.19214 1.19883 1.19800 0.91377 0.90370 0.93412 0.87239 0.87200 0.82926 0.81327 0.80552 0.82217 0.92892 0.93212 0.92144 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 8.54 71.98 0.61 -4.87 16 2 C -0.08 -3.22 1.56 -11.54 -0.02 -3.23 16 3 H 0.09 3.41 7.22 -2.39 -0.02 3.40 16 4 C -0.13 -4.22 3.13 29.85 0.09 -4.13 16 5 C 0.40 12.20 6.83 27.98 0.19 12.39 16 6 O -0.47 -17.09 12.95 -3.02 -0.04 -17.13 16 7 C -0.23 -5.58 5.87 -20.12 -0.12 -5.70 16 8 C -0.05 -0.84 9.47 22.57 0.21 -0.63 16 9 C -0.14 -1.57 10.02 22.23 0.22 -1.34 16 10 C -0.05 -0.46 10.03 22.33 0.22 -0.24 16 11 C -0.17 -2.61 10.01 22.28 0.22 -2.39 16 12 C 0.12 2.94 7.29 22.74 0.17 3.11 16 13 F -0.14 -4.17 15.55 44.97 0.70 -3.47 16 14 C 0.44 22.13 7.03 87.66 0.62 22.75 16 15 O -0.63 -34.58 15.61 -3.08 -0.05 -34.63 16 16 N -0.46 -24.57 3.02 -658.91 -1.99 -26.56 16 17 C 0.12 5.83 7.04 127.77 0.90 6.73 16 18 C -0.35 -20.01 9.29 84.04 0.78 -19.23 16 19 H 0.08 4.60 7.40 -2.91 -0.02 4.58 16 20 C 0.00 -0.23 5.14 84.92 0.44 0.20 16 21 N -0.90 -48.60 10.56 21.66 0.23 -48.37 16 22 Si 0.99 43.02 29.57 68.60 2.03 45.05 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H 0.07 2.60 4.59 -2.38 -0.01 2.59 16 27 H 0.08 2.72 5.95 -2.38 -0.01 2.71 16 28 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.11 3.37 8.09 -2.39 -0.02 3.35 16 30 H 0.11 3.41 7.90 -2.38 -0.02 3.39 16 31 H 0.15 2.47 7.05 -2.91 -0.02 2.45 16 32 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 33 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 34 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.05 2.57 6.50 -2.39 -0.02 2.55 16 36 H 0.05 2.44 7.13 -2.38 -0.02 2.43 16 37 H 0.06 2.42 5.75 -2.39 -0.01 2.41 16 38 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -72.97 318.07 6.52 -66.46 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.09 Total: 15.24 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 4.55 Total: 3.41 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -1.76 Total: -74.93 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.70 Total: -3.47 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.97 6.52 -66.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079840270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.414 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds