Wall clock time and date at job start Tue Mar 31 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46851 * 2 1 4 4 H 1.09001 * 109.47568 * 54.27452 * 3 2 1 5 5 S 1.81404 * 109.47204 * 294.27053 * 3 2 1 6 6 C 1.76193 * 103.00057 * 171.35920 * 5 3 2 7 7 C 1.38977 * 120.08136 * 353.62622 * 6 5 3 8 8 C 1.38084 * 119.92018 * 179.76813 * 7 6 5 9 9 C 1.38306 * 120.07885 * 0.48631 * 8 7 6 10 10 C 1.38294 * 120.15880 * 359.77194 * 9 8 7 11 11 C 1.38079 * 120.08363 * 359.97438 * 10 9 8 12 12 C 1.50708 * 109.46909 * 174.27478 * 3 2 1 13 13 O 1.21276 * 120.00188 * 99.99817 * 12 3 2 14 14 N 1.34775 * 119.99358 * 279.99746 * 12 3 2 15 15 C 1.46497 * 120.00737 * 0.02562 * 14 12 3 16 16 C 1.46503 * 119.99326 * 180.02562 * 14 12 3 17 17 C 1.50701 * 109.47270 * 90.00335 * 16 14 12 18 18 H 1.07995 * 119.99750 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99980 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99835 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47252 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46949 * 120.00225 * 21 19 17 24 24 H 1.48501 * 109.47494 * 240.00088 * 21 19 17 25 25 H 1.08999 * 109.46874 * 295.23037 * 1 2 3 26 26 H 1.08997 * 109.46954 * 175.22954 * 1 2 3 27 27 H 1.09002 * 109.47101 * 55.23157 * 1 2 3 28 28 H 1.09003 * 109.46886 * 120.00146 * 2 1 3 29 29 H 1.09005 * 109.46780 * 239.99832 * 2 1 3 30 30 H 1.08000 * 120.03577 * 0.02562 * 7 6 5 31 31 H 1.08004 * 119.95894 * 180.23961 * 8 7 6 32 32 H 1.07997 * 119.91834 * 179.74361 * 9 8 7 33 33 H 1.08005 * 119.95739 * 179.97438 * 10 9 8 34 34 H 1.08009 * 120.04083 * 179.97438 * 11 10 9 35 35 H 1.09006 * 109.46778 * 89.99707 * 15 14 12 36 36 H 1.08994 * 109.47253 * 210.00165 * 15 14 12 37 37 H 1.09001 * 109.46763 * 330.00067 * 15 14 12 38 38 H 1.09009 * 109.47027 * 210.00242 * 16 14 12 39 39 H 1.09002 * 109.47282 * 329.99436 * 16 14 12 40 40 H 0.97005 * 119.99843 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 0.8343 5 16 1.5787 2.2469 -1.5591 6 6 2.0088 3.9323 -1.2780 7 6 2.4358 4.3418 -0.0204 8 6 2.7766 5.6624 0.1950 9 6 2.6839 6.5793 -0.8364 10 6 2.2543 6.1765 -2.0876 11 6 1.9168 4.8565 -2.3118 12 6 3.5404 1.4449 0.1417 13 8 4.2417 1.5937 -0.8364 14 7 4.1027 1.2816 1.3557 15 6 3.2556 1.1013 2.5372 16 6 5.5612 1.2845 1.4935 17 6 6.0398 2.6921 1.7400 18 1 5.3286 3.5034 1.7887 19 6 7.3855 2.9441 1.9035 20 7 8.2513 1.9559 1.8447 21 14 7.9786 4.6889 2.2083 22 1 6.8146 5.6108 2.2300 23 1 8.6832 4.7511 3.5141 24 1 8.9096 5.0919 1.1238 25 1 -0.3633 0.4381 0.9296 26 1 -0.3633 -1.0241 -0.0855 27 1 -0.3633 0.5860 -0.8442 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.5049 3.6270 0.7863 31 1 3.1122 5.9806 1.1710 32 1 2.9472 7.6124 -0.6639 33 1 2.1828 6.8953 -2.8906 34 1 1.5810 4.5427 -3.2892 35 1 3.0612 0.0391 2.6861 36 1 3.7637 1.5041 3.4134 37 1 2.3117 1.6265 2.3911 38 1 5.8481 0.6509 2.3329 39 1 6.0135 0.9019 0.5785 40 1 9.1981 2.1333 1.9593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110661031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:54 Heat of formation + Delta-G solvation = -10.665220 kcal Electronic energy + Delta-G solvation = -21753.819104 eV Core-core repulsion = 18659.808963 eV Total energy + Delta-G solvation = -3094.010141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.30313 -38.60314 -34.91415 -34.63161 -32.54988 -30.94919 -30.72068 -28.69808 -27.24650 -25.68707 -22.99685 -22.79444 -22.45912 -21.48543 -18.73734 -17.53960 -16.95329 -16.49585 -16.16952 -15.57251 -14.94000 -14.88788 -14.57730 -14.23258 -14.06887 -13.35409 -13.18125 -12.97191 -12.86170 -12.70478 -12.37544 -12.19075 -12.02315 -11.79758 -11.57352 -11.23948 -11.22043 -11.03623 -10.89989 -10.76186 -10.63886 -10.20313 -9.98904 -9.65984 -9.49177 -8.97591 -8.76639 -8.46596 -7.71948 -7.09940 -6.07417 -4.11907 1.39405 1.58092 1.68117 2.49100 3.27139 3.30078 3.35601 3.38799 3.82952 3.93527 4.41755 4.76852 4.78784 4.92259 5.02984 5.12423 5.20497 5.27013 5.28889 5.36835 5.57224 5.58014 5.63900 5.71255 5.79504 5.87204 5.93584 5.98483 6.09676 6.16549 6.20774 6.46264 6.56239 6.69857 6.96482 7.09830 7.38674 7.46614 7.88558 8.18972 8.29610 8.84612 8.99962 9.53160 11.00880 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.006983 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.586575 B = 4009.037044 C = 5660.085414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.099 4.099 3 C -0.108 4.108 4 H 0.108 0.892 5 S -0.067 6.067 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.094 4.094 9 C -0.130 4.130 10 C -0.106 4.106 11 C -0.105 4.105 12 C 0.503 3.497 13 O -0.513 6.513 14 N -0.597 5.597 15 C 0.079 3.921 16 C 0.246 3.754 17 C -0.524 4.524 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.856 1.497 -1.805 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.240 4.240 4 H 0.126 0.874 5 S 0.178 5.822 6 C -0.190 4.190 7 C -0.142 4.142 8 C -0.114 4.114 9 C -0.151 4.151 10 C -0.125 4.125 11 C -0.129 4.129 12 C 0.285 3.715 13 O -0.388 6.388 14 N -0.329 5.329 15 C -0.065 4.065 16 C 0.127 3.873 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.770 0.870 -3.265 17.107 hybrid contribution 1.182 1.591 1.526 2.502 sum -15.587 2.461 -1.739 15.876 Atomic orbital electron populations 1.21874 0.94363 1.02184 1.02717 1.21284 0.96796 0.91703 1.04011 1.24043 0.98512 1.01680 0.99782 0.87381 1.84889 1.75546 0.99018 1.22708 1.21756 1.03289 0.97242 0.96704 1.21130 1.00566 0.96886 0.95653 1.21056 0.97954 0.92890 0.99453 1.21117 1.01008 0.99557 0.93374 1.20994 0.99134 0.95349 0.97061 1.20666 1.01881 0.92743 0.97582 1.19968 0.88571 0.78691 0.84272 1.90741 1.62694 1.48185 1.37197 1.48092 1.09606 1.70068 1.05171 1.21733 0.94584 1.00128 0.90038 1.19332 0.72193 0.97475 0.98288 1.21418 0.92331 0.93364 1.49133 0.92461 1.24918 0.96570 0.97299 0.95229 1.69940 1.02290 1.31101 1.49988 0.86476 0.78851 0.84600 0.77739 1.19757 1.20949 1.20827 0.92416 0.92119 0.91417 0.89819 0.90415 0.86349 0.85842 0.86113 0.85876 0.85831 0.93394 0.90469 0.92703 0.94881 0.93803 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.82 37.16 0.36 -1.13 16 2 C -0.10 -1.24 5.30 -26.73 -0.14 -1.38 16 3 C -0.11 -1.68 1.12 -27.88 -0.03 -1.71 16 4 H 0.11 1.50 5.08 -51.92 -0.26 1.24 16 5 S -0.07 -1.08 19.34 -107.50 -2.08 -3.16 16 6 C -0.08 -1.32 6.04 -39.04 -0.24 -1.56 16 7 C -0.12 -2.09 8.83 -39.36 -0.35 -2.44 16 8 C -0.09 -1.53 10.04 -39.61 -0.40 -1.93 16 9 C -0.13 -1.87 10.04 -39.54 -0.40 -2.26 16 10 C -0.11 -1.46 10.04 -39.62 -0.40 -1.85 16 11 C -0.10 -1.60 9.79 -39.37 -0.39 -1.99 16 12 C 0.50 10.42 5.31 -10.98 -0.06 10.37 16 13 O -0.51 -13.13 15.62 5.56 0.09 -13.04 16 14 N -0.60 -12.40 2.86 -182.95 -0.52 -12.93 16 15 C 0.08 1.21 9.57 59.85 0.57 1.78 16 16 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 17 C -0.52 -14.73 9.39 -34.44 -0.32 -15.05 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 21 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.69 7.02 -51.93 -0.36 0.33 16 28 H 0.08 0.98 6.94 -51.93 -0.36 0.62 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.12 2.11 5.14 -52.49 -0.27 1.84 16 31 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 36 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 37 H 0.05 0.69 5.94 -51.93 -0.31 0.38 16 38 H 0.03 0.86 8.07 -51.92 -0.42 0.44 16 39 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -33.52 341.98 -9.24 -42.76 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.69 Total: 1.26 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.90 Total: -11.10 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.21 Total: -38.79 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.08 Total: -3.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.52 -9.24 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110661031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.099 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds