Wall clock time and date at job start Tue Mar 31 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46851 * 2 1 4 4 H 1.09001 * 109.47568 * 54.27452 * 3 2 1 5 5 S 1.81404 * 109.47204 * 294.27053 * 3 2 1 6 6 C 1.76193 * 103.00057 * 171.35920 * 5 3 2 7 7 C 1.38977 * 120.08136 * 353.62622 * 6 5 3 8 8 C 1.38084 * 119.92018 * 179.76813 * 7 6 5 9 9 C 1.38306 * 120.07885 * 0.48631 * 8 7 6 10 10 C 1.38294 * 120.15880 * 359.77194 * 9 8 7 11 11 C 1.38079 * 120.08363 * 359.97438 * 10 9 8 12 12 C 1.50708 * 109.46909 * 174.27478 * 3 2 1 13 13 O 1.21276 * 120.00188 * 99.99817 * 12 3 2 14 14 N 1.34775 * 119.99358 * 279.99746 * 12 3 2 15 15 C 1.46497 * 120.00737 * 0.02562 * 14 12 3 16 16 C 1.46503 * 119.99326 * 180.02562 * 14 12 3 17 17 C 1.50701 * 109.47270 * 90.00335 * 16 14 12 18 18 H 1.07995 * 119.99750 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99980 * 179.97438 * 17 16 14 20 20 N 1.31514 * 119.99892 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99835 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47252 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46949 * 120.00225 * 21 19 17 24 24 H 1.48501 * 109.47494 * 240.00088 * 21 19 17 25 25 H 1.08999 * 109.46874 * 295.23037 * 1 2 3 26 26 H 1.08997 * 109.46954 * 175.22954 * 1 2 3 27 27 H 1.09002 * 109.47101 * 55.23157 * 1 2 3 28 28 H 1.09003 * 109.46886 * 120.00146 * 2 1 3 29 29 H 1.09005 * 109.46780 * 239.99832 * 2 1 3 30 30 H 1.08000 * 120.03577 * 0.02562 * 7 6 5 31 31 H 1.08004 * 119.95894 * 180.23961 * 8 7 6 32 32 H 1.07997 * 119.91834 * 179.74361 * 9 8 7 33 33 H 1.08005 * 119.95739 * 179.97438 * 10 9 8 34 34 H 1.08009 * 120.04083 * 179.97438 * 11 10 9 35 35 H 1.09006 * 109.46778 * 89.99707 * 15 14 12 36 36 H 1.08994 * 109.47253 * 210.00165 * 15 14 12 37 37 H 1.09001 * 109.46763 * 330.00067 * 15 14 12 38 38 H 1.09009 * 109.47027 * 210.00242 * 16 14 12 39 39 H 1.09002 * 109.47282 * 329.99436 * 16 14 12 40 40 H 0.97005 * 119.99843 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 0.8343 5 16 1.5787 2.2469 -1.5591 6 6 2.0088 3.9323 -1.2780 7 6 2.4358 4.3418 -0.0204 8 6 2.7766 5.6624 0.1950 9 6 2.6839 6.5793 -0.8364 10 6 2.2543 6.1765 -2.0876 11 6 1.9168 4.8565 -2.3118 12 6 3.5404 1.4449 0.1417 13 8 4.2417 1.5937 -0.8364 14 7 4.1027 1.2816 1.3557 15 6 3.2556 1.1013 2.5372 16 6 5.5612 1.2845 1.4935 17 6 6.0398 2.6921 1.7400 18 1 5.3286 3.5034 1.7887 19 6 7.3855 2.9441 1.9035 20 7 8.2513 1.9559 1.8447 21 14 7.9786 4.6889 2.2083 22 1 6.8146 5.6108 2.2300 23 1 8.6832 4.7511 3.5141 24 1 8.9096 5.0919 1.1238 25 1 -0.3633 0.4381 0.9296 26 1 -0.3633 -1.0241 -0.0855 27 1 -0.3633 0.5860 -0.8442 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.5049 3.6270 0.7863 31 1 3.1122 5.9806 1.1710 32 1 2.9472 7.6124 -0.6639 33 1 2.1828 6.8953 -2.8906 34 1 1.5810 4.5427 -3.2892 35 1 3.0612 0.0391 2.6861 36 1 3.7637 1.5041 3.4134 37 1 2.3117 1.6265 2.3911 38 1 5.8481 0.6509 2.3329 39 1 6.0135 0.9019 0.5785 40 1 9.1981 2.1333 1.9593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110661031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:54 Heat of formation + Delta-G solvation = -30.023018 kcal Electronic energy + Delta-G solvation = -21754.658521 eV Core-core repulsion = 18659.808963 eV Total energy + Delta-G solvation = -3094.849558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91445 -39.78893 -36.67592 -35.88281 -34.58452 -32.11800 -31.88905 -30.32643 -28.70388 -27.28697 -24.86518 -23.94657 -23.63371 -22.64609 -20.34587 -18.81525 -18.64567 -18.31114 -17.60603 -16.99565 -16.53773 -16.26925 -15.95630 -15.78526 -15.25669 -14.75912 -14.56932 -14.28815 -14.14407 -13.96418 -13.77184 -13.66352 -13.50381 -13.22060 -12.96571 -12.85901 -12.67111 -12.49464 -12.25803 -12.19461 -12.15064 -11.84488 -11.71264 -11.21675 -10.72559 -10.67554 -10.62905 -9.95775 -9.49255 -8.33459 -8.25492 -6.39286 0.19031 0.39063 0.46527 1.22224 1.32354 1.35275 1.46368 1.73926 2.22262 2.39209 2.75042 3.04729 3.45248 3.62559 3.71225 3.89291 3.98453 4.18891 4.25462 4.38771 4.41147 4.46346 4.54309 4.63603 4.73323 4.77679 4.89920 4.94927 5.01337 5.06476 5.11827 5.18824 5.27717 5.40021 5.42195 5.50930 5.52872 5.77784 5.96771 6.02370 6.61162 6.70636 7.23064 7.38078 8.82054 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.006983 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.586575 B = 4009.037044 C = 5660.085414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.094 4.094 4 H 0.129 0.871 5 S -0.069 6.069 6 C -0.103 4.103 7 C -0.143 4.143 8 C -0.114 4.114 9 C -0.130 4.130 10 C -0.101 4.101 11 C -0.116 4.116 12 C 0.499 3.501 13 O -0.573 6.573 14 N -0.601 5.601 15 C 0.072 3.928 16 C 0.261 3.739 17 C -0.535 4.535 18 H 0.052 0.948 19 C 0.009 3.991 20 N -0.928 5.928 21 Si 0.961 3.039 22 H -0.264 1.264 23 H -0.268 1.268 24 H -0.284 1.284 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.027 0.973 39 H -0.004 1.004 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 2.917 -1.298 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.226 4.226 4 H 0.146 0.854 5 S 0.177 5.823 6 C -0.215 4.215 7 C -0.167 4.167 8 C -0.134 4.134 9 C -0.151 4.151 10 C -0.121 4.121 11 C -0.140 4.140 12 C 0.284 3.716 13 O -0.453 6.453 14 N -0.333 5.333 15 C -0.070 4.070 16 C 0.140 3.860 17 C -0.574 4.574 18 H 0.071 0.929 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.786 3.214 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.210 1.210 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.147 0.853 32 H 0.169 0.831 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.014 0.986 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.668 2.283 -2.719 19.003 hybrid contribution 1.761 1.140 1.338 2.488 sum -16.907 3.423 -1.381 17.305 Atomic orbital electron populations 1.21839 0.91657 1.03528 1.03361 1.21383 0.98995 0.89288 1.03964 1.24007 0.94155 1.03999 1.00427 0.85384 1.84793 1.75056 0.98953 1.23517 1.22018 1.04300 0.97989 0.97213 1.21182 1.02196 0.97510 0.95833 1.21306 0.98515 0.92951 1.00580 1.21515 0.99909 1.00646 0.93000 1.21450 0.97364 0.95380 0.97869 1.21038 1.01729 0.93328 0.97864 1.20816 0.90686 0.76934 0.83187 1.90702 1.64700 1.50773 1.39087 1.48064 1.08165 1.69783 1.07268 1.22054 0.94738 1.02646 0.87538 1.18788 0.75537 0.96266 0.95432 1.21655 0.92668 0.94064 1.48999 0.92929 1.25808 0.96756 1.01552 0.94881 1.70053 1.02705 1.33313 1.50758 0.85454 0.78415 0.79515 0.78038 1.18853 1.19280 1.20996 0.90749 0.90213 0.92018 0.88580 0.91827 0.87449 0.85338 0.83148 0.82235 0.84253 0.90332 0.90972 0.89545 0.95487 0.98568 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.82 71.98 0.71 -1.73 16 2 C -0.10 -2.28 5.30 30.59 0.16 -2.12 16 3 C -0.09 -2.85 1.12 29.85 0.03 -2.82 16 4 H 0.13 3.35 5.08 -2.39 -0.01 3.34 16 5 S -0.07 -2.19 19.34 -56.49 -1.09 -3.28 16 6 C -0.10 -3.49 6.04 22.62 0.14 -3.36 16 7 C -0.14 -5.07 8.83 22.41 0.20 -4.87 16 8 C -0.11 -3.63 10.04 22.25 0.22 -3.41 16 9 C -0.13 -3.46 10.04 22.30 0.22 -3.24 16 10 C -0.10 -2.54 10.04 22.25 0.22 -2.32 16 11 C -0.12 -3.39 9.79 22.41 0.22 -3.18 16 12 C 0.50 21.11 5.31 87.66 0.47 21.58 16 13 O -0.57 -30.71 15.62 -3.02 -0.05 -30.76 16 14 N -0.60 -25.39 2.86 -851.11 -2.43 -27.82 16 15 C 0.07 2.11 9.57 127.77 1.22 3.33 16 16 C 0.26 14.13 5.16 85.63 0.44 14.57 16 17 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 18 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 19 C 0.01 0.52 5.46 84.66 0.46 0.98 16 20 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 21 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.12 7.02 -2.39 -0.02 1.10 16 28 H 0.10 2.01 6.94 -2.39 -0.02 2.00 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.11 3.87 5.14 -2.91 -0.01 3.86 16 31 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.08 1.83 7.65 -2.38 -0.02 1.81 16 36 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 37 H 0.09 1.96 5.94 -2.39 -0.01 1.95 16 38 H 0.03 1.47 8.07 -2.38 -0.02 1.45 16 39 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 40 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -76.32 341.98 4.72 -71.60 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.03 Total: 16.48 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.96 Total: -17.19 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.15 Total: -84.06 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.05 Total: -30.76 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -1.09 Total: -3.28 kcal Total: -76.32 4.72 -71.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110661031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.575 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds