Wall clock time and date at job start Tue Mar 31 2020 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 N 1.46500 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.36879 * 119.99549 * 95.72550 * 4 3 2 6 6 H 1.08006 * 119.99487 * 219.29668 * 5 4 3 7 7 C 1.39043 * 120.00442 * 39.29888 * 5 4 3 8 8 N 1.31364 * 120.00106 * 18.67838 * 7 5 4 9 9 Si 1.86798 * 120.00320 * 198.68281 * 7 5 4 10 10 H 1.48499 * 109.47301 * 89.99570 * 9 7 5 11 11 H 1.48499 * 109.47288 * 210.00086 * 9 7 5 12 12 H 1.48500 * 109.46862 * 329.99752 * 9 7 5 13 13 C 1.34777 * 120.00648 * 275.71988 * 4 3 2 14 14 O 1.21591 * 119.99274 * 4.61807 * 13 4 3 15 15 C 1.47736 * 120.00137 * 184.62258 * 13 4 3 16 16 C 1.39697 * 120.11586 * 22.84340 * 15 13 4 17 17 C 1.37980 * 120.01083 * 179.69608 * 16 15 13 18 18 C 1.38247 * 120.23899 * 0.60373 * 17 16 15 19 19 C 1.39062 * 120.22547 * 359.67205 * 18 17 16 20 20 S 1.76193 * 120.00776 * 179.97438 * 19 18 17 21 21 C 1.81400 * 102.99925 * 0.02562 * 20 19 18 22 22 C 1.53007 * 109.47170 * 180.02562 * 21 20 19 23 23 C 1.38726 * 119.98537 * 0.02650 * 19 18 17 24 24 H 1.09008 * 109.46757 * 299.99508 * 1 2 3 25 25 H 1.09000 * 109.47662 * 59.99491 * 1 2 3 26 26 H 1.08995 * 109.46944 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46724 * 240.00532 * 2 1 3 28 28 H 1.09002 * 109.47399 * 120.00045 * 2 1 3 29 29 H 1.08993 * 109.47109 * 300.00069 * 3 2 1 30 30 H 1.08998 * 109.47000 * 60.00701 * 3 2 1 31 31 H 0.96994 * 120.00606 * 180.02562 * 8 7 5 32 32 H 1.08005 * 119.99573 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.88592 * 180.30059 * 17 16 15 34 34 H 1.07996 * 119.88908 * 179.69539 * 18 17 16 35 35 H 1.08998 * 109.47475 * 299.99911 * 21 20 19 36 36 H 1.08997 * 109.47063 * 60.00230 * 21 20 19 37 37 H 1.08999 * 109.46930 * 299.99733 * 22 21 20 38 38 H 1.08997 * 109.46968 * 60.00137 * 22 21 20 39 39 H 1.09007 * 109.46775 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.11746 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1898 1.5606 -1.1787 6 1 5.0867 0.9816 -1.3425 7 6 3.7308 2.4258 -2.1656 8 7 2.8858 3.3835 -1.8584 9 14 4.3157 2.2264 -3.9284 10 1 3.3989 1.3106 -4.6536 11 1 4.3253 3.5510 -4.5996 12 1 5.6881 1.6591 -3.9333 13 6 4.1785 1.3263 1.1622 14 8 3.5730 1.1374 2.1996 15 6 5.6522 1.4287 1.1751 16 6 6.3175 2.0961 0.1437 17 6 7.6936 2.1958 0.1611 18 6 8.4199 1.6263 1.1904 19 6 7.7683 0.9548 2.2190 20 16 8.6997 0.2306 3.5276 21 6 10.4116 0.6296 3.0793 22 6 11.3613 0.0595 4.1348 23 6 6.3847 0.8543 2.2142 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.5653 3.9869 -2.5469 32 1 5.7543 2.5386 -0.6646 33 1 8.2055 2.7164 -0.6347 34 1 9.4971 1.7036 1.1958 35 1 10.6441 0.1930 2.1081 36 1 10.5311 1.7119 3.0291 37 1 11.1290 0.4959 5.1062 38 1 11.2416 -1.0227 4.1845 39 1 12.3900 0.2997 3.8656 40 1 5.8763 0.3336 3.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120849048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:02 Heat of formation + Delta-G solvation = -14.277463 kcal Electronic energy + Delta-G solvation = -21157.025794 eV Core-core repulsion = 18062.859014 eV Total energy + Delta-G solvation = -3094.166780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.35447 -37.50753 -35.19092 -33.13963 -32.97301 -31.56052 -30.39073 -30.33670 -26.06010 -25.06901 -23.91245 -22.51605 -21.86216 -20.70049 -19.38824 -18.00977 -16.56233 -15.82372 -15.67879 -15.08129 -14.98032 -14.77700 -14.24730 -14.13871 -13.86917 -13.51221 -13.35284 -12.94244 -12.68213 -12.46064 -12.20090 -12.05901 -11.71723 -11.59773 -11.41774 -11.32823 -11.09587 -11.02726 -10.81874 -10.69783 -10.39677 -10.29795 -9.96287 -9.78593 -9.25798 -9.07941 -8.58335 -8.36929 -7.58308 -7.09183 -6.52145 -4.19283 1.54007 1.66411 1.83346 2.59897 3.03362 3.13655 3.14760 3.74780 3.97275 4.49531 4.66031 4.74217 4.77931 4.92573 5.16380 5.31525 5.37956 5.52845 5.58079 5.76969 5.80207 5.85031 5.88626 5.97620 6.06987 6.10414 6.32599 6.40741 6.48552 6.53362 6.64256 6.69808 6.80460 7.01114 7.09462 7.19208 7.25673 7.37396 7.50488 7.81283 8.25710 8.90613 9.39010 9.82766 10.48125 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.004607 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.053422 B = 6075.708832 C = 7308.994871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.120 3.880 4 N -0.427 5.427 5 C -0.341 4.341 6 H 0.096 0.904 7 C 0.044 3.956 8 N -0.851 5.851 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.265 1.265 13 C 0.505 3.495 14 O -0.600 6.600 15 C -0.081 4.081 16 C -0.079 4.079 17 C -0.128 4.128 18 C -0.126 4.126 19 C -0.106 4.106 20 S -0.134 6.134 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.057 4.057 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.273 0.727 32 H 0.179 0.821 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.155 -3.169 2.361 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.003 4.003 4 N -0.143 5.143 5 C -0.469 4.469 6 H 0.114 0.886 7 C -0.164 4.164 8 N -0.486 5.486 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.487 6.487 15 C -0.086 4.086 16 C -0.099 4.099 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.218 4.218 20 S 0.106 5.894 21 C -0.258 4.258 22 C -0.194 4.194 23 C -0.081 4.081 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.196 0.804 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.428 -3.718 3.757 10.809 hybrid contribution 0.694 0.704 -2.156 2.372 sum 10.122 -3.014 1.601 10.682 Atomic orbital electron populations 1.21654 0.96533 1.00493 1.01373 1.21849 0.94763 0.99348 1.01512 1.21407 0.81091 0.94568 1.03252 1.43307 1.04897 1.61398 1.04735 1.19540 1.11710 1.23471 0.92188 0.88612 1.25430 0.96953 0.93706 1.00282 1.69899 1.30748 1.13651 1.34264 0.86170 0.79750 0.78013 0.82385 1.19953 1.20684 1.18957 1.18277 0.86599 0.81822 0.83850 1.90616 1.69791 1.55683 1.32574 1.20029 0.94381 0.99248 0.94927 1.22956 0.93828 0.94614 0.98505 1.21102 0.94710 1.00753 0.98173 1.21137 0.98908 1.00063 0.94928 1.21345 0.96441 1.05071 0.98966 1.85371 1.00534 1.71400 1.32070 1.23527 0.94759 1.04447 1.03083 1.21505 0.98003 1.01738 0.98192 1.20811 0.90863 0.98300 0.98162 0.93098 0.93031 0.93592 0.92378 0.92564 0.88016 0.92861 0.91625 0.80393 0.86065 0.86782 0.89655 0.89644 0.91632 0.91635 0.91068 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.14 -2.79 6.22 -26.73 -0.17 -2.95 16 3 C 0.12 2.83 4.83 -4.04 -0.02 2.81 16 4 N -0.43 -10.61 2.52 -115.92 -0.29 -10.90 16 5 C -0.34 -8.18 5.92 -15.00 -0.09 -8.26 16 6 H 0.10 2.24 6.34 -52.48 -0.33 1.91 16 7 C 0.04 1.03 4.78 -17.45 -0.08 0.95 16 8 N -0.85 -21.10 11.50 55.50 0.64 -20.46 16 9 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 13 C 0.50 12.78 7.43 -12.38 -0.09 12.69 16 14 O -0.60 -16.39 16.19 5.29 0.09 -16.31 16 15 C -0.08 -1.81 5.63 -105.00 -0.59 -2.40 16 16 C -0.08 -1.62 7.86 -39.13 -0.31 -1.93 16 17 C -0.13 -2.18 10.02 -39.67 -0.40 -2.58 16 18 C -0.13 -2.03 9.36 -39.27 -0.37 -2.40 16 19 C -0.11 -1.86 6.11 -39.10 -0.24 -2.10 16 20 S -0.13 -1.96 21.92 -107.50 -2.36 -4.32 16 21 C -0.11 -1.15 5.05 37.16 0.19 -0.97 16 22 C -0.14 -1.12 9.92 37.16 0.37 -0.75 16 23 C -0.06 -1.17 9.33 -38.93 -0.36 -1.53 16 24 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 29 H 0.10 2.48 5.63 -51.93 -0.29 2.19 16 30 H 0.05 1.31 7.67 -51.93 -0.40 0.91 16 31 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 32 H 0.18 3.91 4.80 -52.48 -0.25 3.66 16 33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.11 1.48 5.86 -52.49 -0.31 1.17 16 35 H 0.08 0.85 7.74 -51.93 -0.40 0.45 16 36 H 0.08 0.86 7.74 -51.93 -0.40 0.45 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.13 2.68 7.82 -52.49 -0.41 2.27 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -27.66 340.44 -9.35 -37.01 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.73 Total: 8.16 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.79 Total: -11.47 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.35 Total: -31.36 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.31 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.36 Total: -4.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.66 -9.35 -37.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120849048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.733 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds