Wall clock time and date at job start Tue Mar 31 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 N 1.46500 * 109.46730 * 179.97438 * 3 2 1 5 5 C 1.36879 * 119.99549 * 95.72550 * 4 3 2 6 6 H 1.08006 * 119.99487 * 219.29668 * 5 4 3 7 7 C 1.39043 * 120.00442 * 39.29888 * 5 4 3 8 8 N 1.31364 * 120.00106 * 18.67838 * 7 5 4 9 9 Si 1.86798 * 120.00320 * 198.68281 * 7 5 4 10 10 H 1.48499 * 109.47301 * 89.99570 * 9 7 5 11 11 H 1.48499 * 109.47288 * 210.00086 * 9 7 5 12 12 H 1.48500 * 109.46862 * 329.99752 * 9 7 5 13 13 C 1.34777 * 120.00648 * 275.71988 * 4 3 2 14 14 O 1.21591 * 119.99274 * 4.61807 * 13 4 3 15 15 C 1.47736 * 120.00137 * 184.62258 * 13 4 3 16 16 C 1.39697 * 120.11586 * 22.84340 * 15 13 4 17 17 C 1.37980 * 120.01083 * 179.69608 * 16 15 13 18 18 C 1.38247 * 120.23899 * 0.60373 * 17 16 15 19 19 C 1.39062 * 120.22547 * 359.67205 * 18 17 16 20 20 S 1.76193 * 120.00776 * 179.97438 * 19 18 17 21 21 C 1.81400 * 102.99925 * 0.02562 * 20 19 18 22 22 C 1.53007 * 109.47170 * 180.02562 * 21 20 19 23 23 C 1.38726 * 119.98537 * 0.02650 * 19 18 17 24 24 H 1.09008 * 109.46757 * 299.99508 * 1 2 3 25 25 H 1.09000 * 109.47662 * 59.99491 * 1 2 3 26 26 H 1.08995 * 109.46944 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46724 * 240.00532 * 2 1 3 28 28 H 1.09002 * 109.47399 * 120.00045 * 2 1 3 29 29 H 1.08993 * 109.47109 * 300.00069 * 3 2 1 30 30 H 1.08998 * 109.47000 * 60.00701 * 3 2 1 31 31 H 0.96994 * 120.00606 * 180.02562 * 8 7 5 32 32 H 1.08005 * 119.99573 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.88592 * 180.30059 * 17 16 15 34 34 H 1.07996 * 119.88908 * 179.69539 * 18 17 16 35 35 H 1.08998 * 109.47475 * 299.99911 * 21 20 19 36 36 H 1.08997 * 109.47063 * 60.00230 * 21 20 19 37 37 H 1.08999 * 109.46930 * 299.99733 * 22 21 20 38 38 H 1.08997 * 109.46968 * 60.00137 * 22 21 20 39 39 H 1.09007 * 109.46775 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.11746 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1898 1.5606 -1.1787 6 1 5.0867 0.9816 -1.3425 7 6 3.7308 2.4258 -2.1656 8 7 2.8858 3.3835 -1.8584 9 14 4.3157 2.2264 -3.9284 10 1 3.3989 1.3106 -4.6536 11 1 4.3253 3.5510 -4.5996 12 1 5.6881 1.6591 -3.9333 13 6 4.1785 1.3263 1.1622 14 8 3.5730 1.1374 2.1996 15 6 5.6522 1.4287 1.1751 16 6 6.3175 2.0961 0.1437 17 6 7.6936 2.1958 0.1611 18 6 8.4199 1.6263 1.1904 19 6 7.7683 0.9548 2.2190 20 16 8.6997 0.2306 3.5276 21 6 10.4116 0.6296 3.0793 22 6 11.3613 0.0595 4.1348 23 6 6.3847 0.8543 2.2142 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.5653 3.9869 -2.5469 32 1 5.7543 2.5386 -0.6646 33 1 8.2055 2.7164 -0.6347 34 1 9.4971 1.7036 1.1958 35 1 10.6441 0.1930 2.1081 36 1 10.5311 1.7119 3.0291 37 1 11.1290 0.4959 5.1062 38 1 11.2416 -1.0227 4.1845 39 1 12.3900 0.2997 3.8656 40 1 5.8763 0.3336 3.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120849048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:01 Heat of formation + Delta-G solvation = -27.379356 kcal Electronic energy + Delta-G solvation = -21157.593934 eV Core-core repulsion = 18062.859014 eV Total energy + Delta-G solvation = -3094.734921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10238 -39.12924 -37.10928 -34.73731 -33.84381 -33.36729 -31.86222 -31.84903 -27.77893 -26.85274 -24.90918 -24.03690 -23.20509 -22.35701 -21.20646 -19.68752 -18.16875 -17.31231 -17.07210 -16.83910 -16.30725 -15.85828 -15.73749 -15.69419 -15.54554 -15.11120 -14.79924 -14.50726 -14.24916 -13.65976 -13.53099 -13.30359 -13.22690 -13.06173 -12.88406 -12.62087 -12.56388 -12.44111 -12.34726 -12.09778 -12.01246 -11.86691 -11.56593 -11.09623 -10.95375 -10.62751 -10.44697 -9.91875 -9.48868 -8.35283 -8.33264 -6.08360 0.02203 0.35160 0.54250 1.44558 1.50157 1.50794 1.60496 2.03752 2.28659 2.81914 2.88084 3.14477 3.94931 3.97619 4.02325 4.04651 4.13361 4.24623 4.31243 4.46288 4.51668 4.54206 4.60525 4.71528 4.86084 4.88391 4.92189 4.92738 4.97630 5.05775 5.17629 5.20635 5.24732 5.31820 5.39115 5.49776 5.56954 5.68658 5.92344 5.99554 6.38923 7.03838 7.47615 7.92917 8.67637 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.004607 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.053422 B = 6075.708832 C = 7308.994871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.121 3.879 4 N -0.434 5.434 5 C -0.351 4.351 6 H 0.100 0.900 7 C 0.011 3.989 8 N -0.884 5.884 9 Si 0.979 3.021 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.252 1.252 13 C 0.485 3.515 14 O -0.638 6.638 15 C -0.110 4.110 16 C -0.094 4.094 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.104 4.104 20 S -0.157 6.157 21 C -0.101 4.101 22 C -0.134 4.134 23 C -0.076 4.076 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.029 0.971 31 H 0.277 0.723 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 -3.394 0.948 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C -0.003 4.003 4 N -0.149 5.149 5 C -0.478 4.478 6 H 0.117 0.883 7 C -0.194 4.194 8 N -0.520 5.520 9 Si 0.801 3.199 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.176 1.176 13 C 0.276 3.724 14 O -0.528 6.528 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.135 4.135 18 C -0.135 4.135 19 C -0.216 4.216 20 S 0.084 5.916 21 C -0.249 4.249 22 C -0.193 4.193 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.635 -3.952 2.343 13.445 hybrid contribution -0.170 0.789 -1.620 1.810 sum 12.465 -3.163 0.723 12.881 Atomic orbital electron populations 1.21607 0.93372 1.02423 1.01853 1.21742 0.97492 0.96810 1.00458 1.21404 0.81041 0.96289 1.01541 1.43571 1.05397 1.60813 1.05147 1.19744 1.12152 1.23995 0.91953 0.88290 1.26194 0.96703 0.92782 1.03687 1.69995 1.31930 1.14461 1.35617 0.85139 0.79767 0.77825 0.77124 1.19988 1.20468 1.17569 1.18932 0.88334 0.81620 0.83487 1.90552 1.70969 1.57620 1.33686 1.19903 0.92726 1.01829 0.96988 1.22734 0.95504 0.95423 0.97766 1.21449 0.93114 0.99794 0.99156 1.21598 1.00893 0.97771 0.93271 1.21587 0.95549 1.04325 1.00186 1.85553 1.03899 1.70981 1.31125 1.23741 0.91179 1.05539 1.04441 1.21543 0.98736 1.01534 0.97451 1.20721 0.92508 0.99246 0.97546 0.93014 0.92162 0.90904 0.92393 0.94454 0.88774 0.95193 0.91332 0.82213 0.82388 0.82483 0.88281 0.88360 0.91854 0.91792 0.88267 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.91 71.98 0.71 -3.79 16 2 C -0.13 -5.38 6.22 30.60 0.19 -5.19 16 3 C 0.12 5.99 4.83 86.38 0.42 6.41 16 4 N -0.43 -22.73 2.52 -638.93 -1.61 -24.34 16 5 C -0.35 -17.28 5.92 84.10 0.50 -16.78 16 6 H 0.10 4.73 6.34 -2.91 -0.02 4.71 16 7 C 0.01 0.52 4.78 84.96 0.41 0.93 16 8 N -0.88 -44.82 11.50 21.68 0.25 -44.57 16 9 Si 0.98 36.77 29.59 68.60 2.03 38.80 16 10 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 11 H -0.28 -10.35 7.11 99.48 0.71 -9.65 16 12 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 13 C 0.49 26.21 7.43 86.75 0.64 26.86 16 14 O -0.64 -37.61 16.19 -4.00 -0.06 -37.67 16 15 C -0.11 -5.14 5.63 -20.11 -0.11 -5.26 16 16 C -0.09 -3.87 7.86 22.56 0.18 -3.69 16 17 C -0.12 -3.65 10.02 22.21 0.22 -3.43 16 18 C -0.11 -3.21 9.36 22.47 0.21 -3.00 16 19 C -0.10 -3.55 6.11 22.58 0.14 -3.41 16 20 S -0.16 -4.32 21.92 -56.49 -1.24 -5.56 16 21 C -0.10 -1.71 5.05 71.98 0.36 -1.35 16 22 C -0.13 -1.70 9.92 71.98 0.71 -0.99 16 23 C -0.08 -3.22 9.33 22.69 0.21 -3.01 16 24 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 29 H 0.09 4.80 5.63 -2.39 -0.01 4.79 16 30 H 0.03 1.58 7.67 -2.39 -0.02 1.56 16 31 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 32 H 0.16 7.15 4.80 -2.91 -0.01 7.14 16 33 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 34 H 0.16 3.17 5.86 -2.91 -0.02 3.16 16 35 H 0.10 1.47 7.74 -2.39 -0.02 1.45 16 36 H 0.10 1.48 7.74 -2.39 -0.02 1.46 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.11 4.92 7.82 -2.91 -0.02 4.90 16 Total: -1.00 -64.25 340.44 5.19 -59.05 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 1.03 Total: 29.97 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.79 Total: -15.68 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.36 Total: -68.91 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.06 Total: -37.67 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.24 Total: -5.56 kcal Total: -64.25 5.19 -59.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120849048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.674 kcal (2) G-P(sol) polarization free energy of solvation -64.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds