Wall clock time and date at job start Tue Mar 31 2020 08:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46888 * 2 1 4 4 C 1.50701 * 109.47093 * 119.99666 * 2 1 3 5 5 O 1.21294 * 120.00192 * 15.04351 * 4 2 1 6 6 N 1.34783 * 119.99796 * 195.03401 * 4 2 1 7 7 C 1.37098 * 119.99831 * 184.63799 * 6 4 2 8 8 H 1.07999 * 119.99801 * 92.87854 * 7 6 4 9 9 C 1.38948 * 120.00004 * 272.60759 * 7 6 4 10 10 N 1.31413 * 120.00203 * 14.94260 * 9 7 6 11 11 Si 1.86801 * 120.00007 * 194.94635 * 9 7 6 12 12 H 1.48507 * 109.47000 * 89.99786 * 11 9 7 13 13 H 1.48500 * 109.47403 * 209.99676 * 11 9 7 14 14 H 1.48499 * 109.47095 * 329.99726 * 11 9 7 15 15 C 1.46500 * 120.00091 * 4.64305 * 6 4 2 16 16 C 1.54267 * 110.03119 * 231.40020 * 15 6 4 17 17 C 1.54962 * 104.15654 * 217.13675 * 16 15 6 18 18 C 1.54886 * 102.78246 * 37.88969 * 17 16 15 19 19 C 1.53871 * 110.02904 * 114.18206 * 15 6 4 20 20 C 1.50695 * 109.47435 * 240.00017 * 2 1 3 21 21 C 1.38429 * 122.54266 * 119.73212 * 20 2 1 22 22 C 1.33381 * 114.92250 * 179.76270 * 21 20 2 23 23 S 1.75892 * 109.59401 * 0.48004 * 22 21 20 24 24 C 1.33386 * 122.53731 * 300.02459 * 20 2 1 25 25 H 1.09001 * 109.47214 * 304.20653 * 1 2 3 26 26 H 1.08996 * 109.47269 * 64.20542 * 1 2 3 27 27 H 1.08999 * 109.46511 * 184.20831 * 1 2 3 28 28 H 0.96997 * 120.00070 * 184.97864 * 10 9 7 29 29 H 1.08996 * 110.01509 * 352.79625 * 15 6 4 30 30 H 1.09001 * 110.48428 * 335.78210 * 16 15 6 31 31 H 1.08993 * 110.48356 * 98.42660 * 16 15 6 32 32 H 1.08999 * 110.72035 * 279.57228 * 17 16 15 33 33 H 1.09009 * 110.91971 * 156.29905 * 17 16 15 34 34 H 1.09001 * 110.48945 * 203.40520 * 18 17 16 35 35 H 1.09002 * 110.59783 * 80.81400 * 18 17 16 36 36 H 1.09005 * 110.03058 * 238.56366 * 19 15 6 37 37 H 1.08997 * 110.03816 * 359.95037 * 19 15 6 38 38 H 1.08002 * 122.53115 * 0.02562 * 21 20 2 39 39 H 1.08004 * 125.20767 * 180.20848 * 22 21 20 40 40 H 1.07996 * 125.20534 * 359.97438 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2781 -1.4014 1.8823 6 7 3.3198 -0.5779 1.6067 7 6 3.8010 -1.2979 2.6695 8 1 4.2730 -2.2550 2.5039 9 6 3.6863 -0.7937 3.9592 10 7 2.8736 0.2099 4.2025 11 14 4.6874 -1.5423 5.3472 12 1 5.9901 -0.8373 5.4541 13 1 3.9434 -1.4037 6.6249 14 1 4.9247 -2.9810 5.0662 15 6 4.2051 0.3356 0.8799 16 6 5.4976 -0.3983 0.4668 17 6 6.6087 0.6693 0.6317 18 6 6.1680 1.4283 1.9079 19 6 4.6309 1.4966 1.7955 20 6 2.0324 -0.7104 -1.2304 21 6 2.8263 -0.0874 -2.1779 22 6 3.1885 -0.8596 -3.2034 23 16 2.4984 -2.4653 -3.0051 24 6 1.7411 -1.9855 -1.4918 25 1 -0.3634 0.5777 0.8499 26 1 -0.3633 0.4472 -0.9252 27 1 -0.3632 -1.0249 0.0754 28 1 2.8467 0.6090 5.0861 29 1 3.6973 0.7234 -0.0032 30 1 5.6824 -1.2460 1.1266 31 1 5.4346 -0.7274 -0.5703 32 1 6.6306 1.3390 -0.2279 33 1 7.5813 0.1993 0.7783 34 1 6.5945 2.4313 1.9217 35 1 6.4610 0.8778 2.8019 36 1 4.3306 2.4480 1.3562 37 1 4.1782 1.3810 2.7803 38 1 3.1328 0.9446 -2.0911 39 1 3.8069 -0.5457 -4.0313 40 1 1.1336 -2.6256 -0.8693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125149861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:44 Heat of formation + Delta-G solvation = -5.630269 kcal Electronic energy + Delta-G solvation = -22762.990956 eV Core-core repulsion = 19669.199147 eV Total energy + Delta-G solvation = -3093.791809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.48834 -37.57730 -36.53877 -33.49553 -32.28719 -31.35712 -28.47036 -27.84039 -26.78457 -25.58161 -24.18836 -22.15954 -20.02422 -19.67703 -19.18633 -18.00463 -17.36777 -16.40792 -16.14817 -15.06978 -14.74846 -14.52509 -14.20381 -13.71022 -13.44614 -12.98869 -12.74660 -12.63696 -12.52589 -12.21205 -12.06377 -11.68507 -11.30989 -11.23040 -11.03764 -10.98021 -10.76087 -10.66272 -10.50514 -10.41145 -10.28235 -10.27006 -10.23928 -9.82818 -9.54230 -8.60721 -8.51466 -8.35723 -7.83758 -6.78942 -6.11942 -4.17111 1.29442 1.92361 2.23563 2.99923 3.24629 3.33177 3.35241 4.13376 4.31853 4.91043 5.04931 5.20042 5.39743 5.41376 5.45802 5.55338 5.66756 5.68491 5.80080 5.93075 6.01210 6.12403 6.21574 6.24477 6.27331 6.33060 6.39586 6.47365 6.53165 6.59252 6.62682 6.67617 6.70050 6.83412 6.89233 7.03829 7.15120 7.52185 7.71376 8.53661 9.01505 9.29836 9.52282 10.27983 10.91030 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.006765 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.053034 B = 4137.793158 C = 4819.661472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 H 0.087 0.913 4 C 0.509 3.491 5 O -0.548 6.548 6 N -0.448 5.448 7 C -0.322 4.322 8 H 0.067 0.933 9 C 0.074 3.926 10 N -0.850 5.850 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.137 3.863 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.145 4.145 20 C -0.080 4.080 21 C -0.120 4.120 22 C -0.217 4.217 23 S 0.070 5.930 24 C -0.192 4.192 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 2.317 -12.378 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.086 4.086 3 H 0.105 0.895 4 C 0.295 3.705 5 O -0.426 6.426 6 N -0.170 5.170 7 C -0.450 4.450 8 H 0.084 0.916 9 C -0.134 4.134 10 N -0.484 5.484 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.194 1.194 15 C 0.032 3.968 16 C -0.163 4.163 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.183 4.183 20 C -0.092 4.092 21 C -0.151 4.151 22 C -0.352 4.352 23 S 0.333 5.667 24 C -0.327 4.327 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.344 0.681 -12.716 12.948 hybrid contribution 0.651 1.212 1.586 2.099 sum 2.995 1.893 -11.130 11.681 Atomic orbital electron populations 1.21551 0.92951 1.02820 1.00683 1.20211 0.97142 0.99452 0.91794 0.89475 1.20309 0.83793 0.82119 0.84289 1.90516 1.54947 1.41825 1.55338 1.43117 1.06336 1.38897 1.28649 1.18667 1.39422 1.02923 0.83946 0.91591 1.25656 0.93677 0.95486 0.98582 1.69938 1.31672 1.24390 1.22420 0.86470 0.80012 0.80087 0.81316 1.20308 1.21119 1.19428 1.21769 0.91282 0.90406 0.93358 1.22607 0.94574 0.99075 1.00061 1.22425 0.98025 0.97783 0.97622 1.22239 0.96736 0.98535 0.97816 1.22716 0.95027 0.96361 1.04230 1.18671 0.99670 0.93951 0.96875 1.20097 0.99821 1.01202 0.94016 1.25422 1.08595 0.96735 1.04448 1.84053 1.48499 1.13677 1.20457 1.25430 1.07473 0.99497 1.00305 0.92151 0.93233 0.91864 0.92716 0.91757 0.89899 0.93209 0.92669 0.92638 0.93386 0.91878 0.94086 0.87169 0.84393 0.82231 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 8.46 37.16 0.31 -1.83 16 2 C -0.06 -1.17 2.15 -92.92 -0.20 -1.37 16 3 H 0.09 1.57 6.75 -51.93 -0.35 1.22 16 4 C 0.51 12.43 6.49 -10.98 -0.07 12.35 16 5 O -0.55 -15.64 15.87 5.55 0.09 -15.55 16 6 N -0.45 -10.86 2.13 -106.54 -0.23 -11.09 16 7 C -0.32 -8.61 6.73 -14.93 -0.10 -8.72 16 8 H 0.07 1.82 7.68 -52.49 -0.40 1.41 16 9 C 0.07 1.98 4.69 -17.47 -0.08 1.90 16 10 N -0.85 -23.75 12.04 55.50 0.67 -23.09 16 11 Si 0.89 20.83 29.58 -169.99 -5.03 15.81 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.14 2.75 2.93 -66.81 -0.20 2.55 16 16 C -0.12 -2.29 6.40 -25.03 -0.16 -2.45 16 17 C -0.12 -1.90 6.91 -24.70 -0.17 -2.07 16 18 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 19 C -0.14 -2.91 6.33 -25.61 -0.16 -3.08 16 20 C -0.08 -1.33 4.15 -106.25 -0.44 -1.77 16 21 C -0.12 -1.71 8.81 -41.21 -0.36 -2.07 16 22 C -0.22 -2.75 11.23 29.04 0.33 -2.43 16 23 S 0.07 0.95 23.34 -107.50 -2.51 -1.56 16 24 C -0.19 -3.18 10.19 29.04 0.30 -2.88 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.16 7.57 -51.93 -0.39 0.77 16 28 H 0.26 7.00 8.32 -40.82 -0.34 6.67 16 29 H 0.06 1.18 3.83 -51.93 -0.20 0.98 16 30 H 0.08 1.71 6.66 -51.93 -0.35 1.36 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.11 2.64 5.18 -51.93 -0.27 2.37 16 38 H 0.14 1.73 7.70 -52.49 -0.40 1.33 16 39 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.16 2.85 8.01 -52.49 -0.42 2.43 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -30.42 331.45 -8.92 -39.34 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.72 Total: 5.22 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -1.18 Total: -14.06 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.44 Total: -34.17 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.42 -8.92 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125149861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.705 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds