Wall clock time and date at job start Tue Mar 31 2020 08:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46888 * 2 1 4 4 C 1.50701 * 109.47093 * 119.99666 * 2 1 3 5 5 O 1.21294 * 120.00192 * 15.04351 * 4 2 1 6 6 N 1.34783 * 119.99796 * 195.03401 * 4 2 1 7 7 C 1.37098 * 119.99831 * 184.63799 * 6 4 2 8 8 H 1.07999 * 119.99801 * 92.87854 * 7 6 4 9 9 C 1.38948 * 120.00004 * 272.60759 * 7 6 4 10 10 N 1.31413 * 120.00203 * 14.94260 * 9 7 6 11 11 Si 1.86801 * 120.00007 * 194.94635 * 9 7 6 12 12 H 1.48507 * 109.47000 * 89.99786 * 11 9 7 13 13 H 1.48500 * 109.47403 * 209.99676 * 11 9 7 14 14 H 1.48499 * 109.47095 * 329.99726 * 11 9 7 15 15 C 1.46500 * 120.00091 * 4.64305 * 6 4 2 16 16 C 1.54267 * 110.03119 * 231.40020 * 15 6 4 17 17 C 1.54962 * 104.15654 * 217.13675 * 16 15 6 18 18 C 1.54886 * 102.78246 * 37.88969 * 17 16 15 19 19 C 1.53871 * 110.02904 * 114.18206 * 15 6 4 20 20 C 1.50695 * 109.47435 * 240.00017 * 2 1 3 21 21 C 1.38429 * 122.54266 * 119.73212 * 20 2 1 22 22 C 1.33381 * 114.92250 * 179.76270 * 21 20 2 23 23 S 1.75892 * 109.59401 * 0.48004 * 22 21 20 24 24 C 1.33386 * 122.53731 * 300.02459 * 20 2 1 25 25 H 1.09001 * 109.47214 * 304.20653 * 1 2 3 26 26 H 1.08996 * 109.47269 * 64.20542 * 1 2 3 27 27 H 1.08999 * 109.46511 * 184.20831 * 1 2 3 28 28 H 0.96997 * 120.00070 * 184.97864 * 10 9 7 29 29 H 1.08996 * 110.01509 * 352.79625 * 15 6 4 30 30 H 1.09001 * 110.48428 * 335.78210 * 16 15 6 31 31 H 1.08993 * 110.48356 * 98.42660 * 16 15 6 32 32 H 1.08999 * 110.72035 * 279.57228 * 17 16 15 33 33 H 1.09009 * 110.91971 * 156.29905 * 17 16 15 34 34 H 1.09001 * 110.48945 * 203.40520 * 18 17 16 35 35 H 1.09002 * 110.59783 * 80.81400 * 18 17 16 36 36 H 1.09005 * 110.03058 * 238.56366 * 19 15 6 37 37 H 1.08997 * 110.03816 * 359.95037 * 19 15 6 38 38 H 1.08002 * 122.53115 * 0.02562 * 21 20 2 39 39 H 1.08004 * 125.20767 * 180.20848 * 22 21 20 40 40 H 1.07996 * 125.20534 * 359.97438 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2781 -1.4014 1.8823 6 7 3.3198 -0.5779 1.6067 7 6 3.8010 -1.2979 2.6695 8 1 4.2730 -2.2550 2.5039 9 6 3.6863 -0.7937 3.9592 10 7 2.8736 0.2099 4.2025 11 14 4.6874 -1.5423 5.3472 12 1 5.9901 -0.8373 5.4541 13 1 3.9434 -1.4037 6.6249 14 1 4.9247 -2.9810 5.0662 15 6 4.2051 0.3356 0.8799 16 6 5.4976 -0.3983 0.4668 17 6 6.6087 0.6693 0.6317 18 6 6.1680 1.4283 1.9079 19 6 4.6309 1.4966 1.7955 20 6 2.0324 -0.7104 -1.2304 21 6 2.8263 -0.0874 -2.1779 22 6 3.1885 -0.8596 -3.2034 23 16 2.4984 -2.4653 -3.0051 24 6 1.7411 -1.9855 -1.4918 25 1 -0.3634 0.5777 0.8499 26 1 -0.3633 0.4472 -0.9252 27 1 -0.3632 -1.0249 0.0754 28 1 2.8467 0.6090 5.0861 29 1 3.6973 0.7234 -0.0032 30 1 5.6824 -1.2460 1.1266 31 1 5.4346 -0.7274 -0.5703 32 1 6.6306 1.3390 -0.2279 33 1 7.5813 0.1993 0.7783 34 1 6.5945 2.4313 1.9217 35 1 6.4610 0.8778 2.8019 36 1 4.3306 2.4480 1.3562 37 1 4.1782 1.3810 2.7803 38 1 3.1328 0.9446 -2.0911 39 1 3.8069 -0.5457 -4.0313 40 1 1.1336 -2.6256 -0.8693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125149861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:43 Heat of formation + Delta-G solvation = -21.886229 kcal Electronic energy + Delta-G solvation = -22763.695867 eV Core-core repulsion = 19669.199147 eV Total energy + Delta-G solvation = -3094.496721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10971 -38.95671 -38.19146 -35.33648 -33.86832 -33.19291 -29.68198 -29.30755 -28.41458 -27.30218 -25.69782 -23.63903 -21.42749 -21.28034 -20.72397 -19.42515 -18.56453 -18.21656 -17.79138 -16.97174 -16.22911 -15.99372 -15.80899 -15.37519 -14.84715 -14.55892 -14.36062 -14.03121 -13.88594 -13.59055 -13.44776 -13.22042 -13.00366 -12.86684 -12.76016 -12.55423 -12.30691 -12.22828 -12.12722 -12.07107 -11.75008 -11.71199 -11.54789 -11.24654 -11.16393 -10.57045 -10.18369 -9.61653 -9.16524 -8.74242 -8.14442 -6.27211 0.15652 0.80599 1.13116 1.36107 1.38463 1.46988 1.80884 2.26180 2.45583 3.03110 3.20555 3.95311 3.98170 4.02759 4.06706 4.15828 4.29102 4.36698 4.47069 4.57849 4.70474 4.77691 4.78577 4.90184 4.92238 4.94482 4.97921 5.00433 5.21371 5.24331 5.26594 5.27183 5.35855 5.51080 5.56643 5.57697 5.63933 5.70174 5.89498 6.44998 7.07043 7.29417 7.63586 8.34131 8.85852 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016524 B = 0.006765 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.053034 B = 4137.793158 C = 4819.661472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 H 0.100 0.900 4 C 0.492 3.508 5 O -0.607 6.607 6 N -0.455 5.455 7 C -0.333 4.333 8 H 0.048 0.952 9 C 0.034 3.966 10 N -0.880 5.880 11 Si 0.950 3.050 12 H -0.260 1.260 13 H -0.288 1.288 14 H -0.271 1.271 15 C 0.133 3.867 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.150 4.150 20 C -0.085 4.085 21 C -0.136 4.136 22 C -0.196 4.196 23 S 0.105 5.895 24 C -0.226 4.226 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.262 0.738 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.161 0.839 39 H 0.199 0.801 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 3.707 -15.262 16.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.076 4.076 3 H 0.118 0.882 4 C 0.281 3.719 5 O -0.490 6.490 6 N -0.176 5.176 7 C -0.461 4.461 8 H 0.066 0.934 9 C -0.171 4.171 10 N -0.515 5.515 11 Si 0.775 3.225 12 H -0.185 1.185 13 H -0.214 1.214 14 H -0.196 1.196 15 C 0.029 3.971 16 C -0.160 4.160 17 C -0.145 4.145 18 C -0.151 4.151 19 C -0.189 4.189 20 C -0.098 4.098 21 C -0.166 4.166 22 C -0.331 4.331 23 S 0.369 5.631 24 C -0.362 4.362 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.178 0.822 39 H 0.216 0.784 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.604 2.085 -15.625 16.422 hybrid contribution -0.065 0.713 2.412 2.517 sum 4.539 2.798 -13.212 14.248 Atomic orbital electron populations 1.21512 0.92355 1.01791 1.01797 1.20064 0.97737 0.99431 0.90386 0.88203 1.21217 0.83562 0.81682 0.85445 1.90464 1.56461 1.44496 1.57571 1.43383 1.07011 1.38899 1.28288 1.18668 1.39223 1.02888 0.85318 0.93437 1.26262 0.94441 0.95914 1.00465 1.70038 1.32945 1.25751 1.22741 0.85620 0.79292 0.79266 0.78369 1.18493 1.21436 1.19607 1.21999 0.91564 0.89933 0.93609 1.22547 0.94614 0.98696 1.00166 1.22396 0.97463 0.97012 0.97596 1.22205 0.94861 1.00064 0.97933 1.22684 0.96852 0.97215 1.02110 1.18630 1.00630 0.93996 0.96495 1.20185 1.00095 1.02470 0.93866 1.25899 1.07156 0.95488 1.04530 1.83941 1.47354 1.14217 1.17605 1.25425 1.08639 0.99801 1.02320 0.93712 0.89618 0.93630 0.92880 0.89540 0.93075 0.91440 0.89470 0.91097 0.90695 0.94387 0.92074 0.91276 0.82171 0.78417 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.46 71.98 0.61 -3.57 16 2 C -0.05 -1.99 2.15 -12.29 -0.03 -2.01 16 3 H 0.10 3.49 6.75 -2.39 -0.02 3.47 16 4 C 0.49 24.98 6.49 87.66 0.57 25.55 16 5 O -0.61 -36.83 15.87 -3.07 -0.05 -36.88 16 6 N -0.45 -22.63 2.13 -609.38 -1.30 -23.93 16 7 C -0.33 -18.54 6.73 84.04 0.57 -17.97 16 8 H 0.05 2.77 7.68 -2.91 -0.02 2.74 16 9 C 0.03 1.88 4.69 84.93 0.40 2.28 16 10 N -0.88 -51.11 12.04 21.66 0.26 -50.85 16 11 Si 0.95 44.08 29.58 68.60 2.03 46.11 16 12 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.13 5.20 2.93 45.72 0.13 5.33 16 16 C -0.12 -4.22 6.40 31.69 0.20 -4.02 16 17 C -0.11 -2.97 6.91 31.91 0.22 -2.75 16 18 C -0.11 -3.71 6.83 31.67 0.22 -3.50 16 19 C -0.15 -5.88 6.33 31.32 0.20 -5.68 16 20 C -0.08 -2.73 4.15 -20.92 -0.09 -2.81 16 21 C -0.14 -3.37 8.81 21.22 0.19 -3.18 16 22 C -0.20 -4.07 11.23 66.72 0.75 -3.32 16 23 S 0.11 2.59 23.34 -56.49 -1.32 1.27 16 24 C -0.23 -7.48 10.19 66.72 0.68 -6.80 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.04 1.76 7.57 -2.39 -0.02 1.74 16 28 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16 29 H 0.09 2.97 3.83 -2.39 -0.01 2.96 16 30 H 0.05 2.10 6.66 -2.39 -0.02 2.08 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.07 3.36 5.18 -2.39 -0.01 3.35 16 38 H 0.16 3.22 7.70 -2.91 -0.02 3.20 16 39 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.14 5.18 8.01 -2.91 -0.02 5.16 16 Total: -1.00 -70.78 331.45 5.27 -65.51 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.03 Total: 21.22 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.62 Total: -22.45 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -1.04 Total: -74.79 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.05 Total: -36.88 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.32 Total: 1.27 kcal Total: -70.78 5.27 -65.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125149861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.628 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds