Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47320 * 2 1 4 4 H 1.09010 * 109.46722 * 54.99909 * 3 2 1 5 5 C 1.50698 * 109.47339 * 174.99792 * 3 2 1 6 6 H 1.07995 * 120.00352 * 120.00386 * 5 3 2 7 7 C 1.37882 * 120.00042 * 299.99727 * 5 3 2 8 8 N 1.31508 * 119.99985 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99819 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47140 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47045 * 120.00627 * 9 7 5 12 12 H 1.48508 * 109.46809 * 240.00316 * 9 7 5 13 13 N 1.46495 * 109.47223 * 295.00159 * 3 2 1 14 14 C 1.34782 * 120.00218 * 84.99337 * 13 3 2 15 15 O 1.21282 * 119.99866 * 355.37292 * 14 13 3 16 16 C 1.50694 * 119.99899 * 175.64509 * 14 13 3 17 17 H 1.09006 * 109.58317 * 334.44932 * 16 14 13 18 18 C 1.52979 * 109.58135 * 214.04139 * 16 14 13 19 19 C 1.53205 * 109.29124 * 189.03967 * 18 16 14 20 20 C 1.53172 * 108.93430 * 70.59376 * 19 18 16 21 21 C 1.51409 * 108.68900 * 310.27480 * 20 19 18 22 22 S 1.75830 * 125.24108 * 196.38815 * 21 20 19 23 23 C 1.75730 * 91.08176 * 179.97438 * 22 21 20 24 24 C 1.32916 * 109.57924 * 0.02562 * 23 22 21 25 25 C 1.34632 * 124.79014 * 16.36513 * 21 20 19 26 26 H 1.08997 * 109.47467 * 299.99700 * 1 2 3 27 27 H 1.08993 * 109.47363 * 60.00370 * 1 2 3 28 28 H 1.09002 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47560 * 239.99364 * 2 1 3 30 30 H 1.09006 * 109.47283 * 120.00247 * 2 1 3 31 31 H 0.96995 * 120.00335 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99728 * 264.99564 * 13 3 2 33 33 H 1.08999 * 109.49843 * 309.01090 * 18 16 14 34 34 H 1.09001 * 109.49990 * 69.10850 * 18 16 14 35 35 H 1.09000 * 109.58419 * 310.74355 * 19 18 16 36 36 H 1.08998 * 109.54514 * 190.41248 * 19 18 16 37 37 H 1.09003 * 109.59846 * 190.51494 * 20 19 18 38 38 H 1.08993 * 109.73446 * 70.11515 * 20 19 18 39 39 H 1.07995 * 125.20849 * 180.02562 * 23 22 21 40 40 H 1.07998 * 122.14623 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8888 -0.6521 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1949 11 1 6.3989 1.6167 2.6104 12 1 6.4970 -0.5175 1.4631 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6643 -1.3669 15 8 -0.3703 2.5598 -0.4661 16 6 0.0724 3.4228 -2.6176 17 1 0.9786 3.7988 -3.0926 18 6 -0.8455 4.5930 -2.2595 19 6 -1.3907 5.2208 -3.5463 20 6 -2.3906 4.2531 -4.1866 21 6 -1.7541 2.8818 -4.2685 22 16 -2.3256 1.5564 -5.2727 23 6 -1.0281 0.5189 -4.6998 24 6 -0.2750 1.1859 -3.8312 25 6 -0.6625 2.4991 -3.5796 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8291 -0.0617 2.9496 32 1 2.2719 2.1231 -1.9977 33 1 -1.6745 4.2321 -1.6507 34 1 -0.2816 5.3401 -1.7009 35 1 -0.5694 5.4076 -4.2381 36 1 -1.8916 6.1596 -3.3102 37 1 -2.6439 4.5992 -5.1887 38 1 -3.2936 4.2013 -3.5785 39 1 -0.8673 -0.5041 -5.0065 40 1 0.5832 0.7382 -3.3521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130041135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = -26.608155 kcal Electronic energy + Delta-G solvation = -21924.682941 eV Core-core repulsion = 18829.981463 eV Total energy + Delta-G solvation = -3094.701479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01093 -37.97040 -35.31001 -34.76706 -32.39916 -31.42915 -30.33715 -28.88940 -26.95895 -24.18019 -23.52016 -22.80986 -20.85072 -20.33244 -19.31187 -18.14727 -17.35124 -16.78600 -15.76399 -15.44554 -15.25312 -14.49489 -14.33025 -14.00984 -13.88992 -13.31047 -13.08913 -12.92746 -12.71652 -12.64267 -12.02447 -11.69087 -11.62048 -11.46941 -11.26848 -11.08434 -10.99323 -10.93720 -10.83246 -10.76109 -10.32605 -10.29782 -10.12580 -9.57908 -9.03017 -8.98438 -8.49285 -8.47278 -8.17957 -7.78169 -6.11981 -4.21368 1.06679 1.66924 2.02700 2.76245 3.23236 3.31334 3.33686 3.44797 4.13288 4.38728 4.63221 4.79286 4.95977 5.03585 5.16524 5.19469 5.34869 5.46302 5.48452 5.64304 5.69017 5.77241 5.91119 5.97490 6.09274 6.23933 6.42521 6.43627 6.45409 6.52581 6.59631 6.72312 7.09095 7.24090 7.40982 7.49672 7.63727 7.75765 7.92009 8.20036 8.69955 8.79265 9.17193 9.46487 10.93259 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.004355 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.292396 B = 6428.556158 C = 6828.868797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.511 3.489 15 O -0.541 6.541 16 C -0.047 4.047 17 H 0.095 0.905 18 C -0.105 4.105 19 C -0.112 4.112 20 C -0.046 4.046 21 C -0.173 4.173 22 S 0.076 5.924 23 C -0.212 4.212 24 C -0.120 4.120 25 C -0.083 4.083 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.018 0.982 29 H 0.029 0.971 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.163 0.837 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 5.547 -14.646 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.295 3.705 15 O -0.419 6.419 16 C -0.070 4.070 17 H 0.113 0.887 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.086 4.086 21 C -0.290 4.290 22 S 0.341 5.659 23 C -0.347 4.347 24 C -0.150 4.150 25 C -0.096 4.096 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.181 0.819 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.600 5.120 -14.819 18.926 hybrid contribution 2.568 -0.186 0.734 2.677 sum -8.032 4.935 -14.085 16.949 Atomic orbital electron populations 1.21877 0.98207 0.97791 1.01616 1.21915 0.92683 0.99791 1.02075 1.18773 0.94089 0.89237 0.80981 0.93510 1.21278 0.90773 1.38876 1.06226 0.92073 1.24883 0.98516 0.94836 0.95420 1.69904 1.35000 1.37661 1.09363 0.86427 0.85002 0.77761 0.78104 1.19754 1.20904 1.20905 1.46562 1.14677 1.55984 1.18351 1.20061 0.82791 0.79910 0.87786 1.90660 1.49235 1.60490 1.41542 1.20323 0.98770 0.94651 0.93300 0.88717 1.21441 0.99785 0.95802 0.97306 1.21592 0.98670 0.97704 0.97172 1.20306 0.98188 0.88775 1.01284 1.24703 1.00781 0.99909 1.03585 1.83957 1.31744 1.04482 1.45694 1.25264 1.00282 1.03829 1.05347 1.20177 1.01965 0.93860 0.98966 1.19218 0.96686 0.94547 0.99138 0.93317 0.93656 0.96241 0.95230 0.88467 0.92650 0.78066 0.89986 0.91049 0.91458 0.90881 0.90708 0.90189 0.81914 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.46 37.15 0.31 -2.82 16 2 C -0.13 -3.05 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.72 2.24 -69.09 -0.15 6.56 16 4 H 0.05 1.35 7.65 -51.92 -0.40 0.96 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.71 -14.32 4.90 -54.93 -0.27 -14.58 16 14 C 0.51 9.88 4.92 -10.99 -0.05 9.83 16 15 O -0.54 -12.45 12.87 5.56 0.07 -12.38 16 16 C -0.05 -0.69 2.81 -92.16 -0.26 -0.95 16 17 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 18 C -0.11 -1.40 4.99 -26.64 -0.13 -1.53 16 19 C -0.11 -1.13 5.95 -26.54 -0.16 -1.28 16 20 C -0.05 -0.48 6.26 -27.45 -0.17 -0.65 16 21 C -0.17 -2.24 6.35 -35.24 -0.22 -2.46 16 22 S 0.08 0.90 23.31 -107.50 -2.51 -1.61 16 23 C -0.21 -2.74 11.20 28.89 0.32 -2.41 16 24 C -0.12 -1.76 9.41 -41.06 -0.39 -2.15 16 25 C -0.08 -1.22 5.38 -104.76 -0.56 -1.78 16 26 H 0.05 1.19 7.80 -51.93 -0.40 0.78 16 27 H 0.04 1.01 5.54 -51.93 -0.29 0.72 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.32 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 6.88 8.54 -40.82 -0.35 6.53 16 33 H 0.08 1.25 7.50 -51.93 -0.39 0.86 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.14 2.19 7.77 -52.49 -0.41 1.78 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -29.68 330.63 -10.01 -39.69 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.89 Total: 7.79 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.01 Total: -15.36 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.36 Total: -38.57 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -10.01 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130041135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.082 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds