Wall clock time and date at job start Tue Mar 31 2020 06:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47320 * 2 1 4 4 H 1.09010 * 109.46722 * 54.99909 * 3 2 1 5 5 C 1.50698 * 109.47339 * 174.99792 * 3 2 1 6 6 H 1.07995 * 120.00352 * 120.00386 * 5 3 2 7 7 C 1.37882 * 120.00042 * 299.99727 * 5 3 2 8 8 N 1.31508 * 119.99985 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99819 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47140 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47045 * 120.00627 * 9 7 5 12 12 H 1.48508 * 109.46809 * 240.00316 * 9 7 5 13 13 N 1.46495 * 109.47223 * 295.00159 * 3 2 1 14 14 C 1.34782 * 120.00218 * 84.99337 * 13 3 2 15 15 O 1.21282 * 119.99866 * 355.37292 * 14 13 3 16 16 C 1.50694 * 119.99899 * 175.64509 * 14 13 3 17 17 H 1.09006 * 109.58317 * 334.44932 * 16 14 13 18 18 C 1.52979 * 109.58135 * 214.04139 * 16 14 13 19 19 C 1.53205 * 109.29124 * 189.03967 * 18 16 14 20 20 C 1.53172 * 108.93430 * 70.59376 * 19 18 16 21 21 C 1.51409 * 108.68900 * 310.27480 * 20 19 18 22 22 S 1.75830 * 125.24108 * 196.38815 * 21 20 19 23 23 C 1.75730 * 91.08176 * 179.97438 * 22 21 20 24 24 C 1.32916 * 109.57924 * 0.02562 * 23 22 21 25 25 C 1.34632 * 124.79014 * 16.36513 * 21 20 19 26 26 H 1.08997 * 109.47467 * 299.99700 * 1 2 3 27 27 H 1.08993 * 109.47363 * 60.00370 * 1 2 3 28 28 H 1.09002 * 109.47279 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47560 * 239.99364 * 2 1 3 30 30 H 1.09006 * 109.47283 * 120.00247 * 2 1 3 31 31 H 0.96995 * 120.00335 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99728 * 264.99564 * 13 3 2 33 33 H 1.08999 * 109.49843 * 309.01090 * 18 16 14 34 34 H 1.09001 * 109.49990 * 69.10850 * 18 16 14 35 35 H 1.09000 * 109.58419 * 310.74355 * 19 18 16 36 36 H 1.08998 * 109.54514 * 190.41248 * 19 18 16 37 37 H 1.09003 * 109.59846 * 190.51494 * 20 19 18 38 38 H 1.08993 * 109.73446 * 70.11515 * 20 19 18 39 39 H 1.07995 * 125.20849 * 180.02562 * 23 22 21 40 40 H 1.07998 * 122.14623 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8888 -0.6521 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1949 11 1 6.3989 1.6167 2.6104 12 1 6.4970 -0.5175 1.4631 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6643 -1.3669 15 8 -0.3703 2.5598 -0.4661 16 6 0.0724 3.4228 -2.6176 17 1 0.9786 3.7988 -3.0926 18 6 -0.8455 4.5930 -2.2595 19 6 -1.3907 5.2208 -3.5463 20 6 -2.3906 4.2531 -4.1866 21 6 -1.7541 2.8818 -4.2685 22 16 -2.3256 1.5564 -5.2727 23 6 -1.0281 0.5189 -4.6998 24 6 -0.2750 1.1859 -3.8312 25 6 -0.6625 2.4991 -3.5796 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8291 -0.0617 2.9496 32 1 2.2719 2.1231 -1.9977 33 1 -1.6745 4.2321 -1.6507 34 1 -0.2816 5.3401 -1.7009 35 1 -0.5694 5.4076 -4.2381 36 1 -1.8916 6.1596 -3.3102 37 1 -2.6439 4.5992 -5.1887 38 1 -3.2936 4.2013 -3.5785 39 1 -0.8673 -0.5041 -5.0065 40 1 0.5832 0.7382 -3.3521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130041135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:47 Heat of formation + Delta-G solvation = -43.375236 kcal Electronic energy + Delta-G solvation = -21925.410017 eV Core-core repulsion = 18829.981463 eV Total energy + Delta-G solvation = -3095.428554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35129 -39.33076 -36.94490 -35.96430 -34.28606 -33.08206 -31.72671 -29.89704 -28.88042 -25.57945 -24.54613 -24.50699 -22.17591 -21.67179 -21.10608 -19.42871 -18.65071 -18.09147 -17.41246 -17.10026 -16.69298 -16.08344 -15.51758 -15.31463 -15.09872 -14.72016 -14.57436 -14.13016 -14.09483 -13.89839 -13.50811 -13.22669 -13.15539 -12.96711 -12.87857 -12.70962 -12.60283 -12.19356 -12.12023 -12.02760 -11.89512 -11.68497 -11.58118 -11.29283 -11.03727 -10.61512 -10.48310 -9.59498 -9.45001 -9.20425 -8.15836 -6.33126 0.06300 0.71043 1.02212 1.43542 1.44943 1.56536 1.66702 1.92298 2.37590 2.71987 3.13740 3.66599 3.76865 3.98031 4.04752 4.18793 4.35500 4.38417 4.47947 4.48946 4.53763 4.58024 4.77672 4.78025 4.91479 4.97998 5.06948 5.11099 5.13922 5.21765 5.26844 5.44085 5.44260 5.45502 5.55653 5.57449 5.65219 5.79774 5.94607 6.17730 6.75675 7.02449 7.34435 7.61628 8.89666 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.004355 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.292396 B = 6428.556158 C = 6828.868797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.704 5.704 14 C 0.510 3.490 15 O -0.582 6.582 16 C -0.037 4.037 17 H 0.114 0.886 18 C -0.105 4.105 19 C -0.103 4.103 20 C -0.049 4.049 21 C -0.175 4.175 22 S 0.120 5.880 23 C -0.218 4.218 24 C -0.144 4.144 25 C -0.109 4.109 26 H 0.022 0.978 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.181 0.819 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 6.400 -17.273 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.353 5.353 14 C 0.296 3.704 15 O -0.463 6.463 16 C -0.060 4.060 17 H 0.132 0.868 18 C -0.143 4.143 19 C -0.142 4.142 20 C -0.088 4.088 21 C -0.293 4.293 22 S 0.385 5.615 23 C -0.353 4.353 24 C -0.174 4.174 25 C -0.122 4.122 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.198 0.802 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.665 5.989 -17.491 21.343 hybrid contribution 2.495 -0.465 1.534 2.965 sum -8.171 5.524 -15.957 18.759 Atomic orbital electron populations 1.21699 0.97119 0.98617 1.00489 1.21751 0.93523 0.99332 1.01025 1.18335 0.93552 0.89073 0.81370 0.98630 1.21607 0.91422 1.38747 1.06601 0.91067 1.25758 1.03207 0.94398 0.95046 1.70057 1.36975 1.38451 1.09921 0.85343 0.79265 0.77774 0.78219 1.18417 1.21010 1.20565 1.46337 1.15622 1.56025 1.17299 1.20888 0.81617 0.79078 0.88802 1.90637 1.50268 1.61880 1.43493 1.20271 1.00181 0.94654 0.90936 0.86776 1.21459 0.98663 0.95232 0.98992 1.21573 0.99108 0.98220 0.95289 1.20475 0.98069 0.87345 1.02916 1.25142 0.99879 1.01470 1.02781 1.83803 1.30255 1.03080 1.44328 1.25571 1.00281 1.04850 1.04613 1.20177 1.02471 0.94470 1.00299 1.19192 0.98039 0.94671 1.00283 0.95846 0.93290 0.94286 0.94285 0.91226 0.92662 0.76463 0.92499 0.90996 0.90250 0.88498 0.88030 0.89823 0.80156 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.46 71.98 0.61 -5.12 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.28 14.43 2.24 44.24 0.10 14.53 16 4 H 0.00 -0.26 7.65 -2.38 -0.02 -0.27 16 5 C -0.55 -28.83 8.73 25.60 0.22 -28.60 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.86 5.29 84.66 0.45 1.30 16 8 N -0.92 -52.65 11.29 21.45 0.24 -52.40 16 9 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.70 -29.14 4.90 -446.10 -2.19 -31.32 16 14 C 0.51 20.21 4.92 87.65 0.43 20.64 16 15 O -0.58 -27.97 12.87 -3.04 -0.04 -28.01 16 16 C -0.04 -1.08 2.81 -11.79 -0.03 -1.11 16 17 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 18 C -0.11 -2.70 4.99 30.66 0.15 -2.55 16 19 C -0.10 -1.76 5.95 30.72 0.18 -1.58 16 20 C -0.05 -0.86 6.26 30.13 0.19 -0.67 16 21 C -0.18 -4.14 6.35 25.08 0.16 -3.98 16 22 S 0.12 2.51 23.31 -56.49 -1.32 1.19 16 23 C -0.22 -5.27 11.20 66.65 0.75 -4.52 16 24 C -0.14 -4.14 9.41 21.33 0.20 -3.94 16 25 C -0.11 -3.08 5.38 -19.95 -0.11 -3.18 16 26 H 0.02 1.17 7.80 -2.39 -0.02 1.15 16 27 H 0.05 2.24 5.54 -2.39 -0.01 2.23 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.91 5.95 -2.38 -0.01 3.90 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.40 14.28 8.54 -92.71 -0.79 13.49 16 33 H 0.06 1.74 7.50 -2.39 -0.02 1.73 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.21 8.11 -2.39 -0.02 1.19 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.13 3.93 7.77 -2.91 -0.02 3.91 16 Total: -1.00 -66.37 330.63 2.45 -63.92 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.25 Total: 27.00 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.47 Total: -24.50 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.94 Total: -83.73 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.04 Total: -28.01 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.32 Total: 1.19 kcal Total: -66.37 2.45 -63.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130041135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.546 kcal (2) G-P(sol) polarization free energy of solvation -66.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds