Wall clock time and date at job start Tue Mar 31 2020 08:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46857 * 2 1 4 4 C 1.50702 * 109.47153 * 119.99416 * 2 1 3 5 5 O 1.21287 * 119.99616 * 98.82822 * 4 2 1 6 6 N 1.34770 * 120.00225 * 278.83531 * 4 2 1 7 7 C 1.46500 * 120.00410 * 4.15439 * 6 4 2 8 8 C 1.50702 * 109.47315 * 264.86665 * 7 6 4 9 9 H 1.07998 * 119.99853 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00048 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99897 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99975 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46832 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46858 * 119.99891 * 12 10 8 15 15 H 1.48494 * 109.47243 * 240.00242 * 12 10 8 16 16 C 1.46499 * 119.99782 * 184.43445 * 6 4 2 17 17 C 1.53003 * 109.47267 * 266.02770 * 16 6 4 18 18 C 1.52999 * 117.50364 * 243.74968 * 17 16 6 19 19 C 1.52993 * 117.50266 * 175.08634 * 17 16 6 20 20 C 1.50700 * 109.47453 * 239.99916 * 2 1 3 21 21 C 1.33381 * 125.20463 * 119.72001 * 20 2 1 22 22 C 1.38425 * 114.92163 * 179.85918 * 21 20 2 23 23 C 1.33386 * 114.91974 * 0.42773 * 22 21 20 24 24 S 1.75879 * 109.59475 * 359.77184 * 23 22 21 25 25 H 1.09004 * 109.46787 * 173.12185 * 1 2 3 26 26 H 1.08998 * 109.47567 * 293.12684 * 1 2 3 27 27 H 1.08997 * 109.47342 * 53.13234 * 1 2 3 28 28 H 1.09006 * 109.46409 * 24.86248 * 7 6 4 29 29 H 1.08993 * 109.47641 * 144.86109 * 7 6 4 30 30 H 0.96998 * 119.99753 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.47866 * 26.03371 * 16 6 4 32 32 H 1.09006 * 109.47249 * 146.03197 * 16 6 4 33 33 H 1.09008 * 115.54719 * 29.42227 * 17 16 6 34 34 H 1.08994 * 117.49625 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49734 * 145.01966 * 18 17 16 36 36 H 1.09004 * 117.50445 * 214.98704 * 19 17 16 37 37 H 1.09000 * 117.49907 * 0.02562 * 19 17 16 38 38 H 1.08000 * 122.53837 * 0.02562 * 21 20 2 39 39 H 1.08004 * 122.54049 * 180.19585 * 22 21 20 40 40 H 1.08005 * 125.20497 * 179.74748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3864 -1.8682 1.1602 6 7 2.0879 -0.0590 2.4091 7 6 1.5757 1.3095 2.5147 8 6 2.7096 2.2857 2.3349 9 1 3.7117 1.9230 2.1599 10 6 2.4677 3.6418 2.3938 11 7 1.2473 4.0834 2.6065 12 14 3.8734 4.8518 2.1716 13 1 5.1376 4.1059 1.9469 14 1 3.5973 5.7214 1.0000 15 1 4.0025 5.6898 3.3907 16 6 2.6663 -0.7172 3.5831 17 6 1.5532 -1.3834 4.3944 18 6 1.3020 -0.8618 5.8106 19 6 1.9668 -2.2249 5.6033 20 6 2.0324 -0.7104 -1.2304 21 6 2.7981 -0.1631 -2.1755 22 6 3.1392 -1.0124 -3.2141 23 6 2.6431 -2.2467 -3.1169 24 16 1.6925 -2.3859 -1.6437 25 1 -0.3633 -1.0203 -0.1231 26 1 -0.3634 0.4036 0.9450 27 1 -0.3634 0.6165 -0.8221 28 1 0.8257 1.4773 1.7417 29 1 1.1242 1.4538 3.4963 30 1 1.0770 5.0374 2.6475 31 1 3.3826 -1.4727 3.2602 32 1 3.1734 0.0232 4.2019 33 1 0.6889 -1.7178 3.8205 34 1 1.9300 -0.0443 6.1646 35 1 0.2725 -0.8533 6.1686 36 1 1.3745 -3.1127 5.8251 37 1 3.0320 -2.3036 5.8211 38 1 3.1293 0.8639 -2.1323 39 1 3.7571 -0.6982 -4.0424 40 1 2.8006 -3.0393 -3.8334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158873157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:29 Heat of formation + Delta-G solvation = 16.724996 kcal Electronic energy + Delta-G solvation = -21601.885997 eV Core-core repulsion = 18509.063585 eV Total energy + Delta-G solvation = -3092.822412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.52334 -37.53674 -36.83830 -34.73017 -33.30642 -32.50596 -28.43058 -27.75273 -26.33331 -24.31339 -23.10966 -22.21480 -22.06276 -20.45655 -18.99754 -18.56620 -16.78276 -16.41878 -16.21497 -15.66510 -15.09772 -14.63924 -14.52778 -14.38601 -13.71208 -13.26614 -12.99689 -12.60779 -12.38956 -12.29877 -12.04524 -11.88268 -11.77938 -11.55240 -11.25412 -11.18874 -11.15890 -11.05139 -10.87479 -10.74015 -10.32923 -10.19553 -10.12101 -9.72168 -9.52082 -9.07667 -8.58911 -8.28116 -7.97329 -7.74015 -6.21698 -4.29073 1.34826 2.03856 2.44565 3.05343 3.19006 3.28061 3.31263 3.37845 3.84638 4.19535 4.31521 5.01466 5.05692 5.11776 5.21336 5.27748 5.31346 5.39084 5.55317 5.72766 5.78238 5.85679 5.87277 5.90961 6.08457 6.16307 6.17935 6.24186 6.30002 6.38001 6.41250 6.48076 6.60153 6.66016 6.80682 6.82397 7.18796 7.52063 7.73022 8.02299 8.32408 8.75890 8.97766 9.39188 10.84838 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.006605 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.228781 B = 4238.097181 C = 6159.952713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 H 0.127 0.873 4 C 0.520 3.480 5 O -0.561 6.561 6 N -0.589 5.589 7 C 0.230 3.770 8 C -0.539 4.539 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.889 5.889 12 Si 0.893 3.107 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.151 3.849 17 C -0.155 4.155 18 C -0.178 4.178 19 C -0.181 4.181 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.133 4.133 23 C -0.243 4.243 24 S 0.140 5.860 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 -8.745 -4.069 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 H 0.144 0.856 4 C 0.307 3.693 5 O -0.441 6.441 6 N -0.318 5.318 7 C 0.111 3.889 8 C -0.578 4.578 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.027 3.973 17 C -0.174 4.174 18 C -0.215 4.215 19 C -0.219 4.219 20 C -0.259 4.259 21 C -0.181 4.181 22 C -0.165 4.165 23 C -0.379 4.379 24 S 0.405 5.595 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.678 -10.335 -3.398 11.008 hybrid contribution 1.597 2.121 -0.709 2.748 sum -0.081 -8.213 -4.107 9.184 Atomic orbital electron populations 1.21819 0.92153 1.01970 1.03620 1.19865 0.97332 1.01108 0.88429 0.85551 1.20239 0.78122 0.86365 0.84617 1.90620 1.50736 1.17108 1.85681 1.48117 1.59106 1.16873 1.07682 1.19594 0.95034 0.75405 0.98907 1.21540 0.95025 0.90853 1.50381 0.92058 1.24924 0.95747 0.98270 0.94730 1.69925 1.19425 1.14710 1.48703 0.86506 0.82436 0.81053 0.77920 1.19649 1.20775 1.20837 1.20842 0.93500 0.96286 0.86651 1.22738 1.01657 1.02912 0.90125 1.23027 1.01468 0.97092 0.99887 1.22897 1.00988 0.94685 1.03325 1.24163 1.04559 0.97077 1.00093 1.20122 1.01278 1.01712 0.94957 1.20025 1.02974 0.93193 1.00286 1.25678 1.07889 1.01405 1.02906 1.84241 1.49960 1.10543 1.14728 0.92712 0.90616 0.91377 0.93587 0.94478 0.92551 0.90594 0.90282 0.88206 0.88570 0.89313 0.89312 0.89000 0.84374 0.85001 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.78 37.16 0.33 -1.92 16 2 C -0.04 -0.82 2.25 -92.92 -0.21 -1.03 16 3 H 0.13 2.53 6.91 -51.93 -0.36 2.17 16 4 C 0.52 10.71 6.81 -10.99 -0.07 10.63 16 5 O -0.56 -12.37 14.58 5.55 0.08 -12.29 16 6 N -0.59 -12.17 2.46 -175.06 -0.43 -12.60 16 7 C 0.23 5.27 4.72 -5.19 -0.02 5.25 16 8 C -0.54 -13.62 9.06 -34.44 -0.31 -13.93 16 9 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 12 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 C 0.15 2.81 5.72 -4.04 -0.02 2.79 16 17 C -0.15 -2.54 6.01 -90.62 -0.54 -3.09 16 18 C -0.18 -2.58 10.18 -26.69 -0.27 -2.85 16 19 C -0.18 -2.46 10.25 -26.70 -0.27 -2.73 16 20 C -0.14 -2.46 4.83 -36.01 -0.17 -2.63 16 21 C -0.15 -2.44 10.01 -41.21 -0.41 -2.85 16 22 C -0.13 -1.89 10.18 -41.21 -0.42 -2.31 16 23 C -0.24 -3.36 11.23 29.04 0.33 -3.04 16 24 S 0.14 2.24 21.56 -107.50 -2.32 -0.08 16 25 H 0.05 0.85 7.77 -51.93 -0.40 0.44 16 26 H 0.08 1.28 6.39 -51.93 -0.33 0.95 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.06 4.67 -51.93 -0.24 0.82 16 29 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.08 1.44 7.37 -51.93 -0.38 1.06 16 32 H 0.08 1.48 7.83 -51.93 -0.41 1.07 16 33 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.10 1.41 8.03 -51.93 -0.42 1.00 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 40 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -27.88 346.33 -9.81 -37.69 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.89 Total: 6.11 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.18 Total: -16.11 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.31 Total: -35.68 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.32 Total: -0.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.88 -9.81 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158873157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.413 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds