Wall clock time and date at job start Tue Mar 31 2020 08:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46857 * 2 1 4 4 C 1.50702 * 109.47153 * 119.99416 * 2 1 3 5 5 O 1.21287 * 119.99616 * 98.82822 * 4 2 1 6 6 N 1.34770 * 120.00225 * 278.83531 * 4 2 1 7 7 C 1.46500 * 120.00410 * 4.15439 * 6 4 2 8 8 C 1.50702 * 109.47315 * 264.86665 * 7 6 4 9 9 H 1.07998 * 119.99853 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00048 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99897 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99975 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46832 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46858 * 119.99891 * 12 10 8 15 15 H 1.48494 * 109.47243 * 240.00242 * 12 10 8 16 16 C 1.46499 * 119.99782 * 184.43445 * 6 4 2 17 17 C 1.53003 * 109.47267 * 266.02770 * 16 6 4 18 18 C 1.52999 * 117.50364 * 243.74968 * 17 16 6 19 19 C 1.52993 * 117.50266 * 175.08634 * 17 16 6 20 20 C 1.50700 * 109.47453 * 239.99916 * 2 1 3 21 21 C 1.33381 * 125.20463 * 119.72001 * 20 2 1 22 22 C 1.38425 * 114.92163 * 179.85918 * 21 20 2 23 23 C 1.33386 * 114.91974 * 0.42773 * 22 21 20 24 24 S 1.75879 * 109.59475 * 359.77184 * 23 22 21 25 25 H 1.09004 * 109.46787 * 173.12185 * 1 2 3 26 26 H 1.08998 * 109.47567 * 293.12684 * 1 2 3 27 27 H 1.08997 * 109.47342 * 53.13234 * 1 2 3 28 28 H 1.09006 * 109.46409 * 24.86248 * 7 6 4 29 29 H 1.08993 * 109.47641 * 144.86109 * 7 6 4 30 30 H 0.96998 * 119.99753 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.47866 * 26.03371 * 16 6 4 32 32 H 1.09006 * 109.47249 * 146.03197 * 16 6 4 33 33 H 1.09008 * 115.54719 * 29.42227 * 17 16 6 34 34 H 1.08994 * 117.49625 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49734 * 145.01966 * 18 17 16 36 36 H 1.09004 * 117.50445 * 214.98704 * 19 17 16 37 37 H 1.09000 * 117.49907 * 0.02562 * 19 17 16 38 38 H 1.08000 * 122.53837 * 0.02562 * 21 20 2 39 39 H 1.08004 * 122.54049 * 180.19585 * 22 21 20 40 40 H 1.08005 * 125.20497 * 179.74748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3864 -1.8682 1.1602 6 7 2.0879 -0.0590 2.4091 7 6 1.5757 1.3095 2.5147 8 6 2.7096 2.2857 2.3349 9 1 3.7117 1.9230 2.1599 10 6 2.4677 3.6418 2.3938 11 7 1.2473 4.0834 2.6065 12 14 3.8734 4.8518 2.1716 13 1 5.1376 4.1059 1.9469 14 1 3.5973 5.7214 1.0000 15 1 4.0025 5.6898 3.3907 16 6 2.6663 -0.7172 3.5831 17 6 1.5532 -1.3834 4.3944 18 6 1.3020 -0.8618 5.8106 19 6 1.9668 -2.2249 5.6033 20 6 2.0324 -0.7104 -1.2304 21 6 2.7981 -0.1631 -2.1755 22 6 3.1392 -1.0124 -3.2141 23 6 2.6431 -2.2467 -3.1169 24 16 1.6925 -2.3859 -1.6437 25 1 -0.3633 -1.0203 -0.1231 26 1 -0.3634 0.4036 0.9450 27 1 -0.3634 0.6165 -0.8221 28 1 0.8257 1.4773 1.7417 29 1 1.1242 1.4538 3.4963 30 1 1.0770 5.0374 2.6475 31 1 3.3826 -1.4727 3.2602 32 1 3.1734 0.0232 4.2019 33 1 0.6889 -1.7178 3.8205 34 1 1.9300 -0.0443 6.1646 35 1 0.2725 -0.8533 6.1686 36 1 1.3745 -3.1127 5.8251 37 1 3.0320 -2.3036 5.8211 38 1 3.1293 0.8639 -2.1323 39 1 3.7571 -0.6982 -4.0424 40 1 2.8006 -3.0393 -3.8334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158873157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:28 Heat of formation + Delta-G solvation = 4.391407 kcal Electronic energy + Delta-G solvation = -21602.420821 eV Core-core repulsion = 18509.063585 eV Total energy + Delta-G solvation = -3093.357237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11466 -38.78211 -38.13772 -36.44190 -34.69795 -34.41794 -29.82647 -29.38190 -27.93297 -25.71299 -24.80663 -23.63094 -23.21132 -21.80065 -20.22524 -20.09001 -18.64546 -17.96072 -17.79220 -17.09051 -16.37987 -16.26456 -16.11759 -15.83403 -15.05908 -14.65783 -14.55747 -14.21908 -13.76769 -13.63931 -13.54308 -13.29987 -13.19685 -13.08465 -12.85122 -12.67770 -12.57202 -12.46704 -12.35032 -12.33923 -12.05788 -11.67603 -11.50073 -11.32761 -10.84227 -10.71917 -10.50548 -9.54503 -9.43461 -9.21091 -8.20073 -6.34148 0.13998 0.82573 1.25281 1.39266 1.43195 1.52825 1.70991 1.88978 2.28927 2.44329 2.95401 3.10247 3.64458 3.69499 3.87739 4.02856 4.10792 4.16389 4.28271 4.36435 4.40672 4.64304 4.71580 4.74673 4.76157 4.77282 4.81569 4.89668 4.94986 5.01369 5.08972 5.25743 5.26331 5.26537 5.29521 5.46650 5.64113 5.67754 5.84537 6.06464 6.57155 6.81025 7.27847 7.40400 8.85521 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.010745 B = 0.006605 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.228781 B = 4238.097181 C = 6159.952713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.039 4.039 3 H 0.106 0.894 4 C 0.515 3.485 5 O -0.577 6.577 6 N -0.592 5.592 7 C 0.247 3.753 8 C -0.547 4.547 9 H 0.049 0.951 10 C 0.026 3.974 11 N -0.916 5.916 12 Si 0.951 3.049 13 H -0.273 1.273 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.151 3.849 17 C -0.179 4.179 18 C -0.174 4.174 19 C -0.156 4.156 20 C -0.173 4.173 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.225 4.225 24 S 0.119 5.881 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -9.309 -4.882 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.062 4.062 3 H 0.124 0.876 4 C 0.303 3.697 5 O -0.458 6.458 6 N -0.321 5.321 7 C 0.127 3.873 8 C -0.586 4.586 9 H 0.068 0.932 10 C -0.174 4.174 11 N -0.555 5.555 12 Si 0.777 3.223 13 H -0.198 1.198 14 H -0.202 1.202 15 H -0.204 1.204 16 C 0.028 3.972 17 C -0.198 4.198 18 C -0.211 4.211 19 C -0.194 4.194 20 C -0.291 4.291 21 C -0.182 4.182 22 C -0.171 4.171 23 C -0.360 4.360 24 S 0.383 5.617 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.022 -10.906 -4.203 11.733 hybrid contribution 1.423 2.251 -0.488 2.708 sum 0.400 -8.655 -4.691 9.852 Atomic orbital electron populations 1.21769 0.90835 1.02666 1.03572 1.19741 0.98449 0.99733 0.88270 0.87619 1.20634 0.77709 0.86294 0.85043 1.90593 1.51491 1.17746 1.85992 1.48126 1.59142 1.16208 1.08646 1.19240 0.94283 0.76198 0.97604 1.21681 0.94980 0.91632 1.50269 0.93234 1.25569 0.97745 0.99683 0.94447 1.70004 1.20889 1.15194 1.49416 0.85605 0.79688 0.79003 0.78001 1.19765 1.20164 1.20399 1.20882 0.94254 0.95832 0.86232 1.22556 1.00916 1.05448 0.90885 1.23074 1.02322 0.97813 0.97873 1.23012 1.01921 0.94730 0.99722 1.24123 1.06488 0.98112 1.00332 1.20409 1.00384 1.02250 0.95201 1.20302 1.03365 0.92923 1.00549 1.26072 1.05950 1.02148 1.01866 1.84251 1.51036 1.09823 1.16553 0.91977 0.91787 0.89793 0.93872 0.96262 0.92287 0.91270 0.90917 0.89496 0.88975 0.88127 0.87361 0.87927 0.84155 0.81940 0.79269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.78 71.98 0.63 -3.71 16 2 C -0.04 -1.48 2.25 -12.29 -0.03 -1.51 16 3 H 0.11 4.39 6.91 -2.39 -0.02 4.38 16 4 C 0.52 21.80 6.81 87.66 0.60 22.39 16 5 O -0.58 -25.88 14.58 -3.05 -0.04 -25.92 16 6 N -0.59 -25.30 2.46 -826.14 -2.03 -27.33 16 7 C 0.25 11.70 4.72 85.63 0.40 12.11 16 8 C -0.55 -28.18 9.06 25.60 0.23 -27.95 16 9 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 10 C 0.03 1.36 5.46 84.65 0.46 1.82 16 11 N -0.92 -49.43 13.29 21.45 0.28 -49.15 16 12 Si 0.95 41.34 29.54 68.60 2.03 43.36 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 C 0.15 5.78 5.72 86.38 0.49 6.27 16 17 C -0.18 -5.89 6.01 -10.80 -0.06 -5.96 16 18 C -0.17 -4.91 10.18 30.62 0.31 -4.60 16 19 C -0.16 -3.99 10.25 30.62 0.31 -3.68 16 20 C -0.17 -6.01 4.83 24.59 0.12 -5.90 16 21 C -0.15 -4.76 10.01 21.21 0.21 -4.55 16 22 C -0.14 -3.64 10.18 21.22 0.22 -3.42 16 23 C -0.22 -5.61 11.23 66.72 0.75 -4.86 16 24 S 0.12 3.69 21.56 -56.49 -1.22 2.47 16 25 H 0.06 1.94 7.77 -2.39 -0.02 1.92 16 26 H 0.06 2.24 6.39 -2.39 -0.02 2.23 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.04 2.07 4.67 -2.38 -0.01 2.06 16 29 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 30 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 31 H 0.07 2.69 7.37 -2.39 -0.02 2.68 16 32 H 0.07 2.81 7.83 -2.38 -0.02 2.79 16 33 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 34 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 39 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.19 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -59.36 346.33 4.69 -54.67 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 1.02 Total: 25.42 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 4.65 Total: -23.53 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.75 Total: -76.48 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.04 Total: -25.92 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.22 Total: 2.47 kcal Total: -59.36 4.69 -54.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158873157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.062 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds