Wall clock time and date at job start Tue Mar 31 2020 06:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47258 * 2 1 4 4 N 1.46503 * 109.47114 * 184.40204 * 3 2 1 5 5 C 1.37101 * 119.99596 * 90.55649 * 4 3 2 6 6 H 1.08001 * 119.99922 * 315.00387 * 5 4 3 7 7 C 1.38949 * 120.00036 * 135.01810 * 5 4 3 8 8 N 1.31413 * 120.00122 * 160.04951 * 7 5 4 9 9 Si 1.86797 * 119.99903 * 340.04791 * 7 5 4 10 10 H 1.48495 * 109.47223 * 95.23838 * 9 7 5 11 11 H 1.48499 * 109.47124 * 215.23551 * 9 7 5 12 12 H 1.48496 * 109.47127 * 335.23682 * 9 7 5 13 13 C 1.34771 * 120.00007 * 270.54668 * 4 3 2 14 14 O 1.21290 * 119.99858 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00006 * 0.02562 * 13 4 3 16 16 H 1.08994 * 115.55326 * 34.40734 * 15 13 4 17 17 C 1.53005 * 117.49219 * 248.73983 * 15 13 4 18 18 C 1.52998 * 117.49558 * 180.08531 * 15 13 4 19 19 H 1.08997 * 117.50364 * 359.97438 * 18 15 13 20 20 C 1.50703 * 117.49447 * 214.99848 * 18 15 13 21 21 S 1.75883 * 125.20426 * 300.02263 * 20 18 15 22 22 C 1.75884 * 90.97196 * 179.97438 * 21 20 18 23 23 C 1.33387 * 109.59390 * 0.02562 * 22 21 20 24 24 C 1.33393 * 125.20463 * 119.71806 * 20 18 15 25 25 C 1.50698 * 122.53597 * 0.02562 * 24 20 18 26 26 H 1.08989 * 109.47573 * 55.27264 * 1 2 3 27 27 H 1.09003 * 109.47218 * 175.28070 * 1 2 3 28 28 H 1.09001 * 109.47069 * 295.27231 * 1 2 3 29 29 H 1.08998 * 109.47158 * 120.00758 * 2 1 3 30 30 H 1.09006 * 109.46813 * 239.99764 * 2 1 3 31 31 H 1.08999 * 109.47086 * 304.40089 * 3 2 1 32 32 H 1.08995 * 109.47142 * 64.40124 * 3 2 1 33 33 H 0.96995 * 119.99958 * 180.02562 * 8 7 5 34 34 H 1.08993 * 117.49946 * 359.97438 * 17 15 13 35 35 H 1.09001 * 117.49479 * 145.02308 * 17 15 13 36 36 H 1.08001 * 125.20624 * 180.02562 * 22 21 20 37 37 H 1.08004 * 122.53947 * 180.02562 * 23 22 21 38 38 H 1.09004 * 109.47635 * 89.99833 * 25 24 20 39 39 H 1.09005 * 109.47204 * 209.99804 * 25 24 20 40 40 H 1.09001 * 109.47406 * 329.99940 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5012 1.4437 -0.1060 5 6 4.0989 1.4863 -1.3391 6 1 3.7380 0.8533 -2.1363 7 6 5.1692 2.3435 -1.5632 8 7 5.9847 2.1271 -2.5707 9 14 5.4488 3.8038 -0.4324 10 1 6.4298 3.4346 0.6195 11 1 5.9753 4.9468 -1.2208 12 1 4.1638 4.1909 0.2032 13 6 4.2577 1.4034 1.0086 14 8 5.4674 1.4040 0.9208 15 6 3.6006 1.3563 2.3640 16 1 2.6648 0.7997 2.4137 17 6 3.7371 2.5901 3.2584 18 6 4.5140 1.3137 3.5907 19 1 5.5901 1.3194 3.4175 20 6 4.0508 0.5054 4.7753 21 16 2.5677 0.7872 5.6776 22 6 2.9270 -0.5618 6.7476 23 6 4.0828 -1.1222 6.3882 24 6 4.7002 -0.5369 5.2962 25 6 6.0092 -1.0362 4.7411 26 1 -0.3634 0.5854 -0.8445 27 1 -0.3634 -1.0242 -0.0846 28 1 -0.3633 0.4387 0.9293 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.6137 1.9785 -0.8479 32 1 1.7425 1.9330 0.9267 33 1 6.7320 2.7253 -2.7269 34 1 4.3025 3.4356 2.8666 35 1 2.8912 2.8450 3.8968 36 1 2.3067 -0.8867 7.5698 37 1 4.5026 -1.9716 6.9067 38 1 6.8335 -0.5244 5.2379 39 1 6.0912 -2.1094 4.9133 40 1 6.0498 -0.8359 3.6704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162420310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:46 Heat of formation + Delta-G solvation = 24.328121 kcal Electronic energy + Delta-G solvation = -21698.203602 eV Core-core repulsion = 18605.710886 eV Total energy + Delta-G solvation = -3092.492716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.53327 -38.29442 -36.19444 -35.12253 -32.75871 -31.45461 -30.78595 -27.70678 -26.18828 -25.16264 -23.36063 -22.51198 -21.44420 -21.03708 -19.06732 -18.59923 -17.26203 -16.87013 -15.97730 -15.39579 -15.08432 -14.58163 -13.99116 -13.97649 -13.87005 -13.59751 -13.22596 -12.84558 -12.74280 -12.31177 -12.20399 -12.10949 -12.00631 -11.82432 -11.61304 -11.44597 -11.34868 -10.93134 -10.83101 -10.68017 -10.61093 -10.34788 -10.20353 -9.95735 -9.91934 -8.59388 -8.56812 -8.37532 -8.23855 -7.54494 -6.19994 -3.96187 0.98299 1.63042 2.01261 2.67150 3.23115 3.43535 3.58356 3.63796 4.28374 4.31251 4.54425 4.80677 4.92368 5.06044 5.17649 5.21873 5.32937 5.38065 5.43320 5.44952 5.50976 5.65878 5.68420 5.77182 5.78260 5.87297 5.96982 6.04007 6.07244 6.14135 6.21913 6.25411 6.31942 6.36048 6.53726 6.58241 6.58463 6.78107 7.86914 8.03815 8.80638 8.94944 9.44387 9.86056 10.86826 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.005625 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.426438 B = 4976.977907 C = 5793.127299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.104 3.896 4 N -0.459 5.459 5 C -0.349 4.349 6 H 0.093 0.907 7 C 0.095 3.905 8 N -0.865 5.865 9 Si 0.898 3.102 10 H -0.258 1.258 11 H -0.303 1.303 12 H -0.276 1.276 13 C 0.481 3.519 14 O -0.544 6.544 15 C -0.157 4.157 16 H 0.118 0.882 17 C -0.156 4.156 18 C -0.062 4.062 19 H 0.135 0.865 20 C -0.133 4.133 21 S 0.089 5.911 22 C -0.224 4.224 23 C -0.124 4.124 24 C -0.108 4.108 25 C -0.097 4.097 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.271 0.729 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.137 0.863 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.721 -3.437 16.384 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.020 4.020 4 N -0.180 5.180 5 C -0.475 4.475 6 H 0.111 0.889 7 C -0.114 4.114 8 N -0.499 5.499 9 Si 0.728 3.272 10 H -0.183 1.183 11 H -0.232 1.232 12 H -0.202 1.202 13 C 0.270 3.730 14 O -0.426 6.426 15 C -0.179 4.179 16 H 0.135 0.865 17 C -0.194 4.194 18 C -0.083 4.083 19 H 0.153 0.847 20 C -0.250 4.250 21 S 0.354 5.646 22 C -0.359 4.359 23 C -0.155 4.155 24 C -0.120 4.120 25 C -0.156 4.156 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.179 0.821 37 H 0.155 0.845 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.176 -2.356 16.111 18.690 hybrid contribution 1.081 -0.371 0.640 1.310 sum -8.095 -2.727 16.751 18.803 Atomic orbital electron populations 1.21709 0.96109 1.01207 1.01458 1.21934 0.94976 0.98409 1.02541 1.21652 0.83316 0.95677 1.01340 1.43540 1.03648 1.65428 1.05391 1.18751 1.16367 1.24493 0.87850 0.88949 1.25273 0.94108 0.97111 0.94897 1.69763 1.13195 1.36355 1.30627 0.86546 0.79283 0.79985 0.81426 1.18287 1.23209 1.20170 1.19384 0.87475 0.81736 0.84419 1.90544 1.13693 1.52433 1.85963 1.22578 1.01173 1.02873 0.91301 0.86453 1.23080 1.02422 0.91955 1.01954 1.20455 0.99302 0.97748 0.90759 0.84732 1.23633 0.98470 1.01327 1.01539 1.84117 1.22794 1.32010 1.25713 1.25499 1.02350 1.02188 1.05841 1.20026 0.95624 1.01927 0.97886 1.18827 0.99472 0.96448 0.97222 1.20547 0.92574 1.00531 1.01949 0.92650 0.93110 0.93124 0.92504 0.91237 0.90630 0.92453 0.91871 0.87847 0.88333 0.82132 0.84485 0.91395 0.91741 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.14 -2.26 6.17 -26.74 -0.16 -2.42 16 3 C 0.10 1.94 5.01 -4.04 -0.02 1.92 16 4 N -0.46 -11.03 2.11 -114.82 -0.24 -11.27 16 5 C -0.35 -9.86 9.63 -14.93 -0.14 -10.01 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 7 C 0.10 2.81 4.82 -17.47 -0.08 2.73 16 8 N -0.86 -26.58 13.96 55.50 0.77 -25.80 16 9 Si 0.90 23.88 25.03 -169.99 -4.25 19.62 16 10 H -0.26 -7.12 6.48 56.52 0.37 -6.76 16 11 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.48 11.46 5.69 -10.99 -0.06 11.40 16 14 O -0.54 -15.09 12.26 5.55 0.07 -15.02 16 15 C -0.16 -2.89 4.50 -91.77 -0.41 -3.30 16 16 H 0.12 1.95 6.37 -51.93 -0.33 1.62 16 17 C -0.16 -2.54 9.75 -26.69 -0.26 -2.80 16 18 C -0.06 -1.05 4.98 -91.73 -0.46 -1.50 16 19 H 0.14 2.49 7.07 -51.93 -0.37 2.12 16 20 C -0.13 -1.94 6.13 -36.00 -0.22 -2.16 16 21 S 0.09 1.08 22.16 -107.50 -2.38 -1.30 16 22 C -0.22 -2.42 11.23 29.04 0.33 -2.10 16 23 C -0.12 -1.43 9.98 -41.21 -0.41 -1.84 16 24 C -0.11 -1.47 5.80 -106.25 -0.62 -2.09 16 25 C -0.10 -1.24 9.72 36.00 0.35 -0.89 16 26 H 0.05 0.67 8.14 -51.94 -0.42 0.24 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 32 H 0.06 0.95 6.67 -51.93 -0.35 0.60 16 33 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 34 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.10 1.34 7.27 -51.93 -0.38 0.96 16 36 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 40 H 0.08 1.14 7.25 -51.93 -0.38 0.76 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -32.81 338.97 -8.73 -41.54 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.99 Total: 1.67 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.81 Total: -14.54 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.53 Total: -37.08 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.07 Total: -15.02 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.25 Total: 19.62 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.38 Total: -1.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.81 -8.73 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162420310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.869 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds