Wall clock time and date at job start Tue Mar 31 2020 06:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47258 * 2 1 4 4 N 1.46503 * 109.47114 * 184.40204 * 3 2 1 5 5 C 1.37101 * 119.99596 * 90.55649 * 4 3 2 6 6 H 1.08001 * 119.99922 * 315.00387 * 5 4 3 7 7 C 1.38949 * 120.00036 * 135.01810 * 5 4 3 8 8 N 1.31413 * 120.00122 * 160.04951 * 7 5 4 9 9 Si 1.86797 * 119.99903 * 340.04791 * 7 5 4 10 10 H 1.48495 * 109.47223 * 95.23838 * 9 7 5 11 11 H 1.48499 * 109.47124 * 215.23551 * 9 7 5 12 12 H 1.48496 * 109.47127 * 335.23682 * 9 7 5 13 13 C 1.34771 * 120.00007 * 270.54668 * 4 3 2 14 14 O 1.21290 * 119.99858 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00006 * 0.02562 * 13 4 3 16 16 H 1.08994 * 115.55326 * 34.40734 * 15 13 4 17 17 C 1.53005 * 117.49219 * 248.73983 * 15 13 4 18 18 C 1.52998 * 117.49558 * 180.08531 * 15 13 4 19 19 H 1.08997 * 117.50364 * 359.97438 * 18 15 13 20 20 C 1.50703 * 117.49447 * 214.99848 * 18 15 13 21 21 S 1.75883 * 125.20426 * 300.02263 * 20 18 15 22 22 C 1.75884 * 90.97196 * 179.97438 * 21 20 18 23 23 C 1.33387 * 109.59390 * 0.02562 * 22 21 20 24 24 C 1.33393 * 125.20463 * 119.71806 * 20 18 15 25 25 C 1.50698 * 122.53597 * 0.02562 * 24 20 18 26 26 H 1.08989 * 109.47573 * 55.27264 * 1 2 3 27 27 H 1.09003 * 109.47218 * 175.28070 * 1 2 3 28 28 H 1.09001 * 109.47069 * 295.27231 * 1 2 3 29 29 H 1.08998 * 109.47158 * 120.00758 * 2 1 3 30 30 H 1.09006 * 109.46813 * 239.99764 * 2 1 3 31 31 H 1.08999 * 109.47086 * 304.40089 * 3 2 1 32 32 H 1.08995 * 109.47142 * 64.40124 * 3 2 1 33 33 H 0.96995 * 119.99958 * 180.02562 * 8 7 5 34 34 H 1.08993 * 117.49946 * 359.97438 * 17 15 13 35 35 H 1.09001 * 117.49479 * 145.02308 * 17 15 13 36 36 H 1.08001 * 125.20624 * 180.02562 * 22 21 20 37 37 H 1.08004 * 122.53947 * 180.02562 * 23 22 21 38 38 H 1.09004 * 109.47635 * 89.99833 * 25 24 20 39 39 H 1.09005 * 109.47204 * 209.99804 * 25 24 20 40 40 H 1.09001 * 109.47406 * 329.99940 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5012 1.4437 -0.1060 5 6 4.0989 1.4863 -1.3391 6 1 3.7380 0.8533 -2.1363 7 6 5.1692 2.3435 -1.5632 8 7 5.9847 2.1271 -2.5707 9 14 5.4488 3.8038 -0.4324 10 1 6.4298 3.4346 0.6195 11 1 5.9753 4.9468 -1.2208 12 1 4.1638 4.1909 0.2032 13 6 4.2577 1.4034 1.0086 14 8 5.4674 1.4040 0.9208 15 6 3.6006 1.3563 2.3640 16 1 2.6648 0.7997 2.4137 17 6 3.7371 2.5901 3.2584 18 6 4.5140 1.3137 3.5907 19 1 5.5901 1.3194 3.4175 20 6 4.0508 0.5054 4.7753 21 16 2.5677 0.7872 5.6776 22 6 2.9270 -0.5618 6.7476 23 6 4.0828 -1.1222 6.3882 24 6 4.7002 -0.5369 5.2962 25 6 6.0092 -1.0362 4.7411 26 1 -0.3634 0.5854 -0.8445 27 1 -0.3634 -1.0242 -0.0846 28 1 -0.3633 0.4387 0.9293 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.6137 1.9785 -0.8479 32 1 1.7425 1.9330 0.9267 33 1 6.7320 2.7253 -2.7269 34 1 4.3025 3.4356 2.8666 35 1 2.8912 2.8450 3.8968 36 1 2.3067 -0.8867 7.5698 37 1 4.5026 -1.9716 6.9067 38 1 6.8335 -0.5244 5.2379 39 1 6.0912 -2.1094 4.9133 40 1 6.0498 -0.8359 3.6704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162420310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:46 Heat of formation + Delta-G solvation = 5.599195 kcal Electronic energy + Delta-G solvation = -21699.015749 eV Core-core repulsion = 18605.710886 eV Total energy + Delta-G solvation = -3093.304863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21020 -39.44743 -37.60797 -36.83424 -34.68247 -33.23704 -31.75441 -28.89807 -27.86760 -26.72862 -24.40826 -24.18628 -22.58541 -22.38526 -20.92554 -19.75484 -18.86579 -18.07217 -17.64954 -17.23096 -16.30764 -16.08240 -15.75376 -15.41000 -14.98773 -14.92111 -14.83674 -14.39960 -14.13062 -13.94427 -13.62640 -13.26660 -13.23649 -12.98127 -12.88715 -12.82201 -12.68114 -12.51735 -12.40490 -12.16049 -11.97262 -11.80578 -11.63768 -11.51428 -11.44160 -10.80568 -10.45186 -9.55830 -9.38891 -9.20308 -8.46481 -6.21955 0.02285 0.69273 1.09272 1.16521 1.29944 1.41503 1.67743 1.85569 2.36489 2.58844 2.86379 3.08208 3.50042 3.67039 3.78509 4.02654 4.08511 4.13731 4.17215 4.31140 4.47870 4.53490 4.55517 4.61257 4.68846 4.71584 4.76921 4.80649 4.86060 4.98296 5.06135 5.11781 5.18042 5.23053 5.31074 5.50338 5.56967 5.62334 5.70181 5.86025 6.74496 6.89869 7.31620 7.87616 8.63935 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.005625 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.426438 B = 4976.977907 C = 5793.127299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.099 3.901 4 N -0.473 5.473 5 C -0.346 4.346 6 H 0.065 0.935 7 C 0.047 3.953 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.253 1.253 13 C 0.476 3.524 14 O -0.593 6.593 15 C -0.166 4.166 16 H 0.142 0.858 17 C -0.139 4.139 18 C -0.053 4.053 19 H 0.106 0.894 20 C -0.170 4.170 21 S 0.111 5.889 22 C -0.206 4.206 23 C -0.138 4.138 24 C -0.110 4.110 25 C -0.097 4.097 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.273 0.727 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.194 0.806 37 H 0.162 0.838 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.647 -3.547 20.009 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C -0.023 4.023 4 N -0.194 5.194 5 C -0.473 4.473 6 H 0.083 0.917 7 C -0.158 4.158 8 N -0.547 5.547 9 Si 0.777 3.223 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.177 1.177 13 C 0.267 3.733 14 O -0.478 6.478 15 C -0.188 4.188 16 H 0.159 0.841 17 C -0.177 4.177 18 C -0.074 4.074 19 H 0.124 0.876 20 C -0.286 4.286 21 S 0.376 5.624 22 C -0.342 4.342 23 C -0.167 4.167 24 C -0.122 4.122 25 C -0.156 4.156 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.152 0.848 36 H 0.211 0.789 37 H 0.179 0.821 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.160 -2.458 19.734 23.309 hybrid contribution 1.977 -0.488 -0.411 2.077 sum -10.183 -2.946 19.323 22.040 Atomic orbital electron populations 1.21655 0.92657 1.02487 1.02829 1.21849 0.97846 0.96265 1.01218 1.21923 0.79741 0.97725 1.02924 1.43768 1.06052 1.65512 1.04059 1.18671 1.16274 1.23299 0.89028 0.91744 1.25944 0.94270 0.99460 0.96108 1.69851 1.14335 1.37772 1.32720 0.85722 0.79522 0.77723 0.79360 1.20681 1.22471 1.17727 1.20286 0.87077 0.79641 0.86285 1.90513 1.16095 1.54110 1.87049 1.22392 1.02269 1.05601 0.88527 0.84062 1.23181 1.03030 0.90721 1.00741 1.20260 0.97744 0.98484 0.90902 0.87605 1.23498 1.00865 1.02288 1.01992 1.83945 1.20694 1.32528 1.25237 1.25960 1.01985 1.00622 1.05586 1.20211 0.96031 1.02941 0.97566 1.19112 0.99337 0.96108 0.97664 1.20541 0.93173 1.01957 0.99959 0.92262 0.91778 0.90930 0.92387 0.94093 0.90637 0.89314 0.91814 0.89317 0.84805 0.78868 0.82090 0.90649 0.89796 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.31 16 2 C -0.13 -4.12 6.17 30.59 0.19 -3.93 16 3 C 0.10 3.56 5.01 86.38 0.43 3.99 16 4 N -0.47 -22.93 2.11 -635.56 -1.34 -24.26 16 5 C -0.35 -20.27 9.63 84.04 0.81 -19.46 16 6 H 0.06 4.04 8.06 -2.91 -0.02 4.02 16 7 C 0.05 2.85 4.82 84.93 0.41 3.26 16 8 N -0.91 -58.44 13.96 21.66 0.30 -58.14 16 9 Si 0.95 50.63 25.03 68.60 1.72 52.35 16 10 H -0.28 -15.89 6.48 99.48 0.64 -15.24 16 11 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 12 H -0.25 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.48 22.92 5.69 87.66 0.50 23.42 16 14 O -0.59 -34.09 12.26 -3.06 -0.04 -34.13 16 15 C -0.17 -5.90 4.50 -11.54 -0.05 -5.95 16 16 H 0.14 4.29 6.37 -2.39 -0.02 4.27 16 17 C -0.14 -4.23 9.75 30.62 0.30 -3.93 16 18 C -0.05 -1.76 4.98 -11.52 -0.06 -1.82 16 19 H 0.11 4.08 7.07 -2.39 -0.02 4.07 16 20 C -0.17 -4.62 6.13 24.59 0.15 -4.47 16 21 S 0.11 2.26 22.16 -56.49 -1.25 1.01 16 22 C -0.21 -3.51 11.23 66.72 0.75 -2.76 16 23 C -0.14 -2.67 9.98 21.22 0.21 -2.46 16 24 C -0.11 -2.77 5.80 -20.92 -0.12 -2.89 16 25 C -0.10 -2.44 9.72 71.24 0.69 -1.75 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.76 7.31 -2.39 -0.02 1.75 16 30 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 32 H 0.09 2.64 6.67 -2.39 -0.02 2.62 16 33 H 0.27 16.51 8.31 -92.71 -0.77 15.74 16 34 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.13 3.10 7.27 -2.39 -0.02 3.09 16 36 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.08 1.72 8.13 -2.38 -0.02 1.70 16 40 H 0.04 1.39 7.25 -2.39 -0.02 1.38 16 Total: -1.00 -75.48 338.97 5.28 -70.20 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.96 Total: 14.03 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 4.92 Total: -21.06 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -1.04 Total: -82.40 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.04 Total: -34.13 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 1.72 Total: 52.35 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.25 Total: 1.01 kcal Total: -75.48 5.28 -70.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162420310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.802 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds