Wall clock time and date at job start Tue Mar 31 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46880 * 2 1 4 4 N 1.46502 * 109.46698 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99809 * 269.99571 * 4 3 2 6 6 H 1.08002 * 119.99822 * 142.55188 * 5 4 3 7 7 C 1.38948 * 119.99976 * 322.54579 * 5 4 3 8 8 N 1.31412 * 120.00459 * 338.10910 * 7 5 4 9 9 Si 1.86803 * 119.99775 * 158.10501 * 7 5 4 10 10 H 1.48501 * 109.47198 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46912 * 120.00341 * 9 7 5 12 12 H 1.48503 * 109.47272 * 240.00019 * 9 7 5 13 13 C 1.34783 * 120.00005 * 90.00402 * 4 3 2 14 14 O 1.21293 * 120.00102 * 4.92067 * 13 4 3 15 15 C 1.50696 * 119.99697 * 184.92624 * 13 4 3 16 16 H 1.09001 * 115.55228 * 300.85040 * 15 13 4 17 17 C 1.53077 * 117.51436 * 86.57402 * 15 13 4 18 18 C 1.53001 * 117.49789 * 155.18419 * 15 13 4 19 19 H 1.09002 * 117.49550 * 144.99459 * 18 15 13 20 20 C 1.50699 * 117.49732 * 359.97438 * 18 15 13 21 21 S 1.75876 * 125.20357 * 299.77746 * 20 18 15 22 22 C 1.75887 * 90.97259 * 179.97438 * 21 20 18 23 23 C 1.33390 * 109.59143 * 0.31730 * 22 21 20 24 24 C 1.33387 * 125.20232 * 120.08766 * 20 18 15 25 25 C 1.50707 * 122.54081 * 359.95671 * 24 20 18 26 26 H 1.08992 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47062 * 300.00576 * 1 2 3 28 28 H 1.09000 * 109.47229 * 60.00008 * 1 2 3 29 29 H 1.08994 * 109.47001 * 240.00382 * 2 1 3 30 30 H 1.08996 * 109.47458 * 119.99286 * 2 1 3 31 31 H 1.08998 * 109.47253 * 59.99665 * 3 2 1 32 32 H 1.09007 * 109.46740 * 299.99537 * 3 2 1 33 33 H 0.96998 * 120.00419 * 185.04950 * 8 7 5 34 34 H 1.08998 * 117.51134 * 0.02562 * 17 15 13 35 35 H 1.09000 * 117.49586 * 214.96171 * 17 15 13 36 36 H 1.07993 * 125.20523 * 180.10867 * 22 21 20 37 37 H 1.08001 * 122.54348 * 179.73699 * 23 22 21 38 38 H 1.08997 * 109.47010 * 89.99940 * 25 24 20 39 39 H 1.08995 * 109.47057 * 210.00274 * 25 24 20 40 40 H 1.09000 * 109.46630 * 329.99988 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4424 1.1864 6 1 5.1040 0.8737 1.2824 7 6 3.7115 2.1742 2.2659 8 7 2.8877 3.1782 2.0654 9 14 4.2378 1.7305 4.0025 10 1 5.1634 0.5701 3.9580 11 1 4.9282 2.8903 4.6220 12 1 3.0408 1.3790 4.8080 13 6 4.1784 1.4428 -1.1682 14 8 3.5749 1.5331 -2.2164 15 6 5.6812 1.3307 -1.1711 16 1 6.2123 2.1150 -0.6319 17 6 6.2855 -0.0756 -1.1499 18 6 6.3448 0.7638 -2.4278 19 1 7.3124 1.1752 -2.7152 20 6 5.4455 0.3597 -3.5676 21 16 4.1854 -0.8641 -3.4801 22 6 3.7681 -0.5980 -5.1679 23 6 4.5620 0.3426 -5.6820 24 6 5.4874 0.8714 -4.7987 25 6 6.4681 1.9438 -5.1979 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 2.6107 3.7345 2.8101 34 1 5.5960 -0.9197 -1.1342 35 1 7.2139 -0.2161 -0.5965 36 1 2.9905 -1.1190 -5.7065 37 1 4.4884 0.6670 -6.7095 38 1 7.3812 1.4803 -5.5713 39 1 6.0298 2.5643 -5.9795 40 1 6.7026 2.5624 -4.3316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162420382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:50 Heat of formation + Delta-G solvation = 22.236794 kcal Electronic energy + Delta-G solvation = -22018.043032 eV Core-core repulsion = 18925.459629 eV Total energy + Delta-G solvation = -3092.583403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.19236 -37.72069 -35.96527 -34.67585 -32.73970 -31.19748 -30.36809 -27.26789 -26.03122 -24.81801 -22.97753 -22.62862 -21.16155 -20.42730 -19.01690 -18.23660 -16.99374 -16.02829 -15.75644 -15.11287 -14.65750 -14.33664 -14.21339 -13.74858 -13.54514 -13.31379 -13.05777 -12.68876 -12.38173 -12.00763 -11.83613 -11.68875 -11.55327 -11.42256 -11.30280 -11.20398 -11.13371 -10.97351 -10.62901 -10.32704 -10.32021 -10.24666 -10.01888 -9.76313 -9.67769 -9.11030 -8.42106 -7.68531 -7.66416 -7.28913 -6.35267 -4.01285 1.58588 2.28814 2.64032 3.09135 3.20437 3.21407 3.24487 3.82251 4.10977 4.40145 4.73058 5.00623 5.07444 5.34919 5.41733 5.52940 5.60350 5.77765 5.81247 5.87576 5.89324 5.93213 5.94463 6.05590 6.10855 6.26380 6.35443 6.39400 6.53829 6.55628 6.59342 6.64120 6.73285 6.84630 6.96922 7.09047 7.16067 7.40034 7.54413 8.01842 8.42631 9.11360 9.59220 10.02284 10.67121 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.005793 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.171224 B = 4831.972042 C = 5621.528984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.116 3.884 4 N -0.435 5.435 5 C -0.337 4.337 6 H 0.089 0.911 7 C 0.044 3.956 8 N -0.860 5.860 9 Si 0.910 3.090 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.492 3.508 14 O -0.580 6.580 15 C -0.128 4.128 16 H 0.124 0.876 17 C -0.157 4.157 18 C -0.079 4.079 19 H 0.119 0.881 20 C -0.096 4.096 21 S 0.130 5.870 22 C -0.237 4.237 23 C -0.126 4.126 24 C -0.129 4.129 25 C -0.084 4.084 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.269 0.731 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.127 0.873 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 -5.903 -7.238 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.007 4.007 4 N -0.153 5.153 5 C -0.465 4.465 6 H 0.107 0.893 7 C -0.162 4.162 8 N -0.497 5.497 9 Si 0.737 3.263 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.206 1.206 13 C 0.280 3.720 14 O -0.464 6.464 15 C -0.150 4.150 16 H 0.142 0.858 17 C -0.195 4.195 18 C -0.099 4.099 19 H 0.137 0.863 20 C -0.214 4.214 21 S 0.398 5.602 22 C -0.373 4.373 23 C -0.158 4.158 24 C -0.141 4.141 25 C -0.144 4.144 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.034 -6.742 -6.478 9.829 hybrid contribution 0.611 0.942 0.020 1.123 sum 3.644 -5.799 -6.457 9.413 Atomic orbital electron populations 1.21655 0.96719 1.00357 1.01344 1.21834 0.94565 0.99534 1.01217 1.21381 0.81600 0.94432 1.03332 1.43333 1.04427 1.63203 1.04330 1.19429 1.09480 1.29566 0.87990 0.89309 1.25357 0.96620 0.94056 1.00127 1.69893 1.33436 1.14089 1.32268 0.86147 0.78626 0.78794 0.82766 1.19175 1.20816 1.20562 1.19408 0.87162 0.81135 0.84345 1.90621 1.69492 1.54619 1.31655 1.22215 0.95746 0.97985 0.99013 0.85799 1.23031 1.02722 0.94586 0.99186 1.20523 0.98336 1.04631 0.86438 0.86312 1.23230 1.00118 1.01579 0.96463 1.83869 1.31927 1.36131 1.08322 1.25355 1.06606 1.06828 0.98477 1.19774 0.97140 0.98649 1.00221 1.18483 1.01070 1.01480 0.93043 1.20378 0.96679 0.95964 1.01331 0.93697 0.93044 0.93199 0.92991 0.92384 0.88105 0.92798 0.92100 0.88921 0.87963 0.83018 0.85540 0.92338 0.92271 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.13 -2.73 6.26 -26.73 -0.17 -2.90 16 3 C 0.12 2.78 5.05 -4.04 -0.02 2.76 16 4 N -0.43 -10.77 2.52 -114.80 -0.29 -11.06 16 5 C -0.34 -8.37 8.68 -14.93 -0.13 -8.50 16 6 H 0.09 2.12 7.26 -52.49 -0.38 1.74 16 7 C 0.04 1.10 4.94 -17.47 -0.09 1.02 16 8 N -0.86 -22.68 11.49 55.50 0.64 -22.04 16 9 Si 0.91 19.24 29.61 -169.99 -5.03 14.20 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 C 0.49 11.71 6.84 -10.98 -0.08 11.64 16 14 O -0.58 -14.73 12.72 5.55 0.07 -14.66 16 15 C -0.13 -2.54 4.61 -91.73 -0.42 -2.96 16 16 H 0.12 2.41 8.14 -51.93 -0.42 1.99 16 17 C -0.16 -2.63 9.68 -26.69 -0.26 -2.89 16 18 C -0.08 -1.35 5.47 -91.77 -0.50 -1.85 16 19 H 0.12 1.71 7.53 -51.93 -0.39 1.32 16 20 C -0.10 -1.75 4.31 -36.00 -0.16 -1.91 16 21 S 0.13 2.36 19.97 -107.50 -2.15 0.21 16 22 C -0.24 -3.86 11.23 29.04 0.33 -3.54 16 23 C -0.13 -2.03 9.98 -41.21 -0.41 -2.45 16 24 C -0.13 -2.21 5.80 -106.24 -0.62 -2.82 16 25 C -0.08 -1.17 9.72 36.01 0.35 -0.82 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.10 2.58 5.54 -51.93 -0.29 2.29 16 32 H 0.05 1.36 7.36 -51.92 -0.38 0.97 16 33 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 34 H 0.09 1.64 7.26 -51.93 -0.38 1.26 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.06 0.91 7.24 -51.93 -0.38 0.54 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -28.83 339.99 -9.42 -38.25 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.98 Total: 7.29 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.80 Total: -17.31 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.35 Total: -33.10 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.66 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.15 Total: 0.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.83 -9.42 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162420382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.485 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds