Wall clock time and date at job start Tue Mar 31 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46880 * 2 1 4 4 N 1.46502 * 109.46698 * 180.02562 * 3 2 1 5 5 C 1.37097 * 119.99809 * 269.99571 * 4 3 2 6 6 H 1.08002 * 119.99822 * 142.55188 * 5 4 3 7 7 C 1.38948 * 119.99976 * 322.54579 * 5 4 3 8 8 N 1.31412 * 120.00459 * 338.10910 * 7 5 4 9 9 Si 1.86803 * 119.99775 * 158.10501 * 7 5 4 10 10 H 1.48501 * 109.47198 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46912 * 120.00341 * 9 7 5 12 12 H 1.48503 * 109.47272 * 240.00019 * 9 7 5 13 13 C 1.34783 * 120.00005 * 90.00402 * 4 3 2 14 14 O 1.21293 * 120.00102 * 4.92067 * 13 4 3 15 15 C 1.50696 * 119.99697 * 184.92624 * 13 4 3 16 16 H 1.09001 * 115.55228 * 300.85040 * 15 13 4 17 17 C 1.53077 * 117.51436 * 86.57402 * 15 13 4 18 18 C 1.53001 * 117.49789 * 155.18419 * 15 13 4 19 19 H 1.09002 * 117.49550 * 144.99459 * 18 15 13 20 20 C 1.50699 * 117.49732 * 359.97438 * 18 15 13 21 21 S 1.75876 * 125.20357 * 299.77746 * 20 18 15 22 22 C 1.75887 * 90.97259 * 179.97438 * 21 20 18 23 23 C 1.33390 * 109.59143 * 0.31730 * 22 21 20 24 24 C 1.33387 * 125.20232 * 120.08766 * 20 18 15 25 25 C 1.50707 * 122.54081 * 359.95671 * 24 20 18 26 26 H 1.08992 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47062 * 300.00576 * 1 2 3 28 28 H 1.09000 * 109.47229 * 60.00008 * 1 2 3 29 29 H 1.08994 * 109.47001 * 240.00382 * 2 1 3 30 30 H 1.08996 * 109.47458 * 119.99286 * 2 1 3 31 31 H 1.08998 * 109.47253 * 59.99665 * 3 2 1 32 32 H 1.09007 * 109.46740 * 299.99537 * 3 2 1 33 33 H 0.96998 * 120.00419 * 185.04950 * 8 7 5 34 34 H 1.08998 * 117.51134 * 0.02562 * 17 15 13 35 35 H 1.09000 * 117.49586 * 214.96171 * 17 15 13 36 36 H 1.07993 * 125.20523 * 180.10867 * 22 21 20 37 37 H 1.08001 * 122.54348 * 179.73699 * 23 22 21 38 38 H 1.08997 * 109.47010 * 89.99940 * 25 24 20 39 39 H 1.08995 * 109.47057 * 210.00274 * 25 24 20 40 40 H 1.09000 * 109.46630 * 329.99988 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4424 1.1864 6 1 5.1040 0.8737 1.2824 7 6 3.7115 2.1742 2.2659 8 7 2.8877 3.1782 2.0654 9 14 4.2378 1.7305 4.0025 10 1 5.1634 0.5701 3.9580 11 1 4.9282 2.8903 4.6220 12 1 3.0408 1.3790 4.8080 13 6 4.1784 1.4428 -1.1682 14 8 3.5749 1.5331 -2.2164 15 6 5.6812 1.3307 -1.1711 16 1 6.2123 2.1150 -0.6319 17 6 6.2855 -0.0756 -1.1499 18 6 6.3448 0.7638 -2.4278 19 1 7.3124 1.1752 -2.7152 20 6 5.4455 0.3597 -3.5676 21 16 4.1854 -0.8641 -3.4801 22 6 3.7681 -0.5980 -5.1679 23 6 4.5620 0.3426 -5.6820 24 6 5.4874 0.8714 -4.7987 25 6 6.4681 1.9438 -5.1979 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 2.6107 3.7345 2.8101 34 1 5.5960 -0.9197 -1.1342 35 1 7.2139 -0.2161 -0.5965 36 1 2.9905 -1.1190 -5.7065 37 1 4.4884 0.6670 -6.7095 38 1 7.3812 1.4803 -5.5713 39 1 6.0298 2.5643 -5.9795 40 1 6.7026 2.5624 -4.3316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162420382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:50 Heat of formation + Delta-G solvation = 8.909678 kcal Electronic energy + Delta-G solvation = -22018.620939 eV Core-core repulsion = 18925.459629 eV Total energy + Delta-G solvation = -3093.161310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84339 -39.13791 -37.49043 -36.46672 -34.46914 -33.04685 -31.58801 -28.55360 -27.72253 -26.65902 -24.33368 -24.10757 -22.54173 -22.05099 -20.80795 -19.66578 -18.52243 -17.75174 -17.28243 -16.75412 -16.27517 -15.98225 -15.74605 -15.36157 -15.01921 -14.68795 -14.61224 -14.04824 -13.83038 -13.60458 -13.18186 -13.13373 -13.07275 -12.94325 -12.84949 -12.69320 -12.60155 -12.37701 -12.31351 -12.02012 -11.98008 -11.62791 -11.51788 -11.34186 -11.16975 -10.97582 -10.21077 -9.39658 -9.02578 -8.87135 -8.24665 -5.96593 0.27083 0.98733 1.34292 1.41306 1.49122 1.60650 1.93069 2.08288 2.34997 2.89646 3.03082 3.22751 3.73081 4.00245 4.02192 4.17866 4.20028 4.29700 4.36110 4.53051 4.62146 4.65179 4.70786 4.73852 4.79950 4.92631 4.94860 4.97212 5.04784 5.08720 5.13415 5.21097 5.21207 5.33157 5.38646 5.51188 5.61860 5.71206 5.85465 6.13983 6.51447 7.20495 7.72538 8.15766 8.78871 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.005793 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.171224 B = 4831.972042 C = 5621.528984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.120 3.880 4 N -0.451 5.451 5 C -0.345 4.345 6 H 0.097 0.903 7 C 0.002 3.998 8 N -0.898 5.898 9 Si 0.978 3.022 10 H -0.255 1.255 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.484 3.516 14 O -0.602 6.602 15 C -0.157 4.157 16 H 0.125 0.875 17 C -0.139 4.139 18 C -0.064 4.064 19 H 0.149 0.851 20 C -0.122 4.122 21 S 0.079 5.921 22 C -0.235 4.235 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.083 4.083 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.270 0.730 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.176 0.824 37 H 0.156 0.844 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 -6.732 -7.612 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.004 4.004 4 N -0.169 5.169 5 C -0.472 4.472 6 H 0.115 0.885 7 C -0.201 4.201 8 N -0.536 5.536 9 Si 0.802 3.198 10 H -0.179 1.179 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.273 3.727 14 O -0.488 6.488 15 C -0.179 4.179 16 H 0.142 0.858 17 C -0.177 4.177 18 C -0.084 4.084 19 H 0.167 0.833 20 C -0.240 4.240 21 S 0.346 5.654 22 C -0.370 4.370 23 C -0.166 4.166 24 C -0.146 4.146 25 C -0.142 4.142 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.193 0.807 37 H 0.173 0.827 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.369 -7.581 -6.859 11.118 hybrid contribution 0.167 1.235 -0.002 1.246 sum 4.536 -6.346 -6.862 10.389 Atomic orbital electron populations 1.21609 0.93968 1.02250 1.01531 1.21699 0.96929 0.96927 1.00418 1.21281 0.81974 0.96112 1.01060 1.43586 1.04663 1.63735 1.04923 1.19710 1.09840 1.29503 0.88192 0.88546 1.26168 0.96665 0.93609 1.03645 1.70008 1.34984 1.15271 1.33336 0.85113 0.78204 0.78708 0.77802 1.17893 1.20679 1.20747 1.20063 0.88971 0.80030 0.83651 1.90583 1.70617 1.55332 1.32290 1.22094 0.93107 1.00197 1.02475 0.85762 1.23122 1.03159 0.92187 0.99228 1.20705 0.98698 1.03353 0.85630 0.83330 1.23460 1.00656 1.02412 0.97453 1.83977 1.33380 1.37395 1.10672 1.25693 1.07123 1.07027 0.97184 1.20169 0.96616 0.98283 1.01536 1.19010 1.01364 1.01464 0.92796 1.20451 0.97062 0.95231 1.01490 0.90908 0.92774 0.93109 0.93962 0.92768 0.89890 0.95244 0.92070 0.90230 0.84627 0.80659 0.82694 0.89787 0.91104 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.91 71.98 0.71 -3.87 16 2 C -0.12 -5.06 6.26 30.60 0.19 -4.87 16 3 C 0.12 5.94 5.05 86.38 0.44 6.38 16 4 N -0.45 -22.91 2.52 -635.51 -1.60 -24.51 16 5 C -0.34 -17.29 8.68 84.04 0.73 -16.56 16 6 H 0.10 4.58 7.26 -2.91 -0.02 4.56 16 7 C 0.00 0.08 4.94 84.93 0.42 0.50 16 8 N -0.90 -48.37 11.49 21.66 0.25 -48.12 16 9 Si 0.98 39.27 29.61 68.60 2.03 41.30 16 10 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 11 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.48 23.53 6.84 87.65 0.60 24.13 16 14 O -0.60 -31.47 12.72 -3.07 -0.04 -31.50 16 15 C -0.16 -6.20 4.61 -11.51 -0.05 -6.25 16 16 H 0.12 4.81 8.14 -2.39 -0.02 4.79 16 17 C -0.14 -4.47 9.68 30.62 0.30 -4.17 16 18 C -0.06 -2.09 5.47 -11.54 -0.06 -2.15 16 19 H 0.15 3.88 7.53 -2.39 -0.02 3.86 16 20 C -0.12 -4.36 4.31 24.59 0.11 -4.25 16 21 S 0.08 2.87 19.97 -56.49 -1.13 1.74 16 22 C -0.23 -7.40 11.23 66.72 0.75 -6.65 16 23 C -0.13 -4.09 9.98 21.22 0.21 -3.88 16 24 C -0.13 -4.36 5.80 -20.92 -0.12 -4.48 16 25 C -0.08 -2.10 9.72 71.24 0.69 -1.40 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 4.42 5.54 -2.39 -0.01 4.40 16 32 H 0.03 1.55 7.36 -2.38 -0.02 1.54 16 33 H 0.27 13.69 8.32 -92.71 -0.77 12.92 16 34 H 0.08 2.78 7.26 -2.39 -0.02 2.77 16 35 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 40 H 0.06 1.52 7.24 -2.39 -0.02 1.51 16 Total: -1.00 -63.47 339.99 5.44 -58.03 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 1.02 Total: 30.61 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.91 Total: -27.54 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.35 Total: -72.63 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.04 Total: -31.50 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.13 Total: 1.74 kcal Total: -63.47 5.44 -58.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162420382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.935 kcal (2) G-P(sol) polarization free energy of solvation -63.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds