Wall clock time and date at job start Tue Mar 31 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 H 1.09002 * 109.47443 * 54.99658 * 3 2 1 5 5 C 1.52995 * 109.47245 * 175.00174 * 3 2 1 6 6 C 1.50707 * 109.47301 * 184.99829 * 5 3 2 7 7 C 1.38238 * 119.99792 * 90.00016 * 6 5 3 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.97953 * 6 5 3 12 12 N 1.46503 * 109.47097 * 294.99941 * 3 2 1 13 13 C 1.34783 * 119.99580 * 84.99972 * 12 3 2 14 14 O 1.21272 * 120.00112 * 0.02562 * 13 12 3 15 15 C 1.50702 * 119.99468 * 179.97438 * 13 12 3 16 16 S 1.80999 * 109.46940 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00271 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99623 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99877 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99628 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46940 * 89.99668 * 21 19 17 23 23 H 1.48495 * 109.46612 * 209.99514 * 21 19 17 24 24 H 1.48498 * 109.46973 * 329.99792 * 21 19 17 25 25 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46688 * 299.99613 * 1 2 3 27 27 H 1.08998 * 109.46942 * 60.00193 * 1 2 3 28 28 H 1.09003 * 109.46987 * 239.99474 * 2 1 3 29 29 H 1.09006 * 109.47134 * 120.00429 * 2 1 3 30 30 H 1.09005 * 109.47610 * 65.00133 * 5 3 2 31 31 H 1.09000 * 109.47256 * 304.99474 * 5 3 2 32 32 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 33 33 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 36 36 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 37 37 H 0.96993 * 120.00529 * 264.99746 * 12 3 2 38 38 H 1.09001 * 109.47206 * 299.99726 * 15 13 12 39 39 H 1.08998 * 109.47129 * 60.00365 * 15 13 12 40 40 H 0.97003 * 119.99266 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 6 4.0570 2.8633 0.2492 7 6 4.1847 3.4444 1.4969 8 6 4.6367 4.7459 1.6102 9 6 4.9616 5.4660 0.4758 10 6 4.8289 4.8866 -0.7722 11 6 4.3813 3.5836 -0.8852 12 7 1.6525 2.0974 -1.2518 13 6 0.4351 2.6643 -1.3669 14 8 -0.3392 2.6326 -0.4341 15 6 0.0367 3.3386 -2.6545 16 16 -1.6423 3.9959 -2.4968 17 6 -1.8434 4.7084 -4.0957 18 1 -1.0430 4.6482 -4.8182 19 6 -3.0309 5.3462 -4.4270 20 7 -3.1813 5.8779 -5.6217 21 14 -4.4156 5.4497 -3.1774 22 1 -4.2642 6.6883 -2.3723 23 1 -5.7205 5.4761 -3.8857 24 1 -4.3628 4.2670 -2.2809 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 4.0030 0.9835 -0.7597 31 1 3.8571 0.8800 1.0113 32 1 3.9313 2.8817 2.3833 33 1 4.7360 5.2001 2.5850 34 1 5.3151 6.4826 0.5644 35 1 5.0785 5.4506 -1.6587 36 1 4.2823 3.1293 -1.8600 37 1 2.2719 2.1231 -1.9978 38 1 0.7281 4.1541 -2.8666 39 1 0.0680 2.6145 -3.4686 40 1 -4.0110 6.3239 -5.8530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170816508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:35 Heat of formation + Delta-G solvation = -30.591581 kcal Electronic energy + Delta-G solvation = -20864.602214 eV Core-core repulsion = 17769.728001 eV Total energy + Delta-G solvation = -3094.874213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03579 -39.00115 -36.16736 -32.53086 -32.41624 -32.35009 -30.99679 -29.29130 -27.97207 -25.59681 -24.12899 -22.74254 -21.44798 -21.02948 -20.27540 -17.81292 -16.91945 -16.59692 -16.14039 -15.57429 -15.18604 -15.06300 -14.91335 -14.18424 -13.89046 -13.57400 -13.54493 -13.42955 -13.14561 -12.82162 -12.76060 -12.43541 -12.16975 -11.78613 -11.52477 -11.28414 -11.24524 -11.10341 -10.99911 -10.91576 -10.74721 -10.55371 -9.84185 -9.40207 -9.05076 -8.99136 -8.89957 -8.71587 -8.47422 -6.89011 -6.27644 -3.98630 1.23232 1.29190 2.80900 3.05950 3.33049 3.37035 3.51562 3.65015 3.70622 4.34462 4.48250 4.66610 4.72157 4.80924 4.89147 4.99085 5.05408 5.11482 5.13505 5.20354 5.32452 5.38585 5.50448 5.52030 5.53993 5.78806 5.80058 5.90115 5.93605 5.96769 6.04601 6.05530 6.24238 6.34397 6.40541 6.45448 6.58902 6.69629 6.88787 7.69763 7.95574 8.43022 8.58764 9.18852 10.81711 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.004202 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.532673 B = 6661.256621 C = 7676.563276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.152 3.848 4 H 0.089 0.911 5 C -0.089 4.089 6 C -0.079 4.079 7 C -0.117 4.117 8 C -0.118 4.118 9 C -0.125 4.125 10 C -0.116 4.116 11 C -0.113 4.113 12 N -0.728 5.728 13 C 0.532 3.468 14 O -0.514 6.514 15 C -0.124 4.124 16 S -0.140 6.140 17 C -0.521 4.521 18 H 0.087 0.913 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.395 0.605 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.121 -8.637 12.115 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.047 3.953 4 H 0.107 0.893 5 C -0.127 4.127 6 C -0.079 4.079 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.143 4.143 10 C -0.134 4.134 11 C -0.131 4.131 12 N -0.382 5.382 13 C 0.318 3.682 14 O -0.389 6.389 15 C -0.275 4.275 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.105 0.895 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.229 0.771 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.703 -8.595 13.549 23.162 hybrid contribution 0.527 0.390 -1.245 1.408 sum 17.231 -8.204 12.304 22.707 Atomic orbital electron populations 1.21814 0.94444 1.00458 1.03725 1.21966 0.97531 0.95787 1.01782 1.20960 0.92659 0.93342 0.88341 0.89284 1.20939 0.94784 0.93299 1.03628 1.19790 0.98741 0.96027 0.93362 1.21027 1.00035 0.95522 0.96962 1.21128 0.99340 0.94601 0.98582 1.21150 1.00544 0.99831 0.92760 1.21166 0.99334 0.95252 0.97627 1.21008 0.99473 0.94689 0.97891 1.45999 1.16924 1.59123 1.16158 1.20152 0.81098 0.77542 0.89379 1.90696 1.50609 1.57507 1.40076 1.23284 1.03697 1.02928 0.97607 1.84759 1.11482 1.72712 1.22467 1.22331 1.05524 1.41425 0.97585 0.89469 1.24706 0.97786 0.93566 0.95195 1.69943 1.26863 1.35550 1.19442 0.86740 0.81703 0.81239 0.82205 1.19241 1.19969 1.15917 0.93815 0.92163 0.91829 0.91983 0.91514 0.90392 0.89524 0.86217 0.86241 0.86260 0.86045 0.86319 0.77062 0.88752 0.88721 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.52 37.16 0.32 -1.66 16 2 C -0.13 -1.36 5.61 -26.73 -0.15 -1.51 16 3 C 0.15 1.66 2.24 -67.94 -0.15 1.50 16 4 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 5 C -0.09 -0.72 4.89 -27.88 -0.14 -0.86 16 6 C -0.08 -0.79 4.95 -104.62 -0.52 -1.30 16 7 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 8 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 9 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 10 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 11 C -0.11 -1.13 9.10 -39.58 -0.36 -1.49 16 12 N -0.73 -9.09 4.48 -53.81 -0.24 -9.33 16 13 C 0.53 9.25 6.42 -10.98 -0.07 9.18 16 14 O -0.51 -10.64 13.00 5.56 0.07 -10.57 16 15 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 16 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 17 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 18 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 21 Si 0.86 21.94 27.74 -169.99 -4.72 17.22 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 27 H 0.06 1.03 5.65 -51.93 -0.29 0.74 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 0.99 7.57 -52.49 -0.40 0.59 16 37 H 0.40 3.97 7.83 -40.82 -0.32 3.65 16 38 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -33.64 343.88 -9.17 -42.80 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.03 Total: 2.99 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.21 Total: -16.78 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.53 Total: -35.29 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.22 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.64 -9.17 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170816508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.211 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds