Wall clock time and date at job start Tue Mar 31 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 H 1.09002 * 109.47443 * 54.99658 * 3 2 1 5 5 C 1.52995 * 109.47245 * 175.00174 * 3 2 1 6 6 C 1.50707 * 109.47301 * 184.99829 * 5 3 2 7 7 C 1.38238 * 119.99792 * 90.00016 * 6 5 3 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.97953 * 6 5 3 12 12 N 1.46503 * 109.47097 * 294.99941 * 3 2 1 13 13 C 1.34783 * 119.99580 * 84.99972 * 12 3 2 14 14 O 1.21272 * 120.00112 * 0.02562 * 13 12 3 15 15 C 1.50702 * 119.99468 * 179.97438 * 13 12 3 16 16 S 1.80999 * 109.46940 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00271 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99623 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00415 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99877 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99628 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46940 * 89.99668 * 21 19 17 23 23 H 1.48495 * 109.46612 * 209.99514 * 21 19 17 24 24 H 1.48498 * 109.46973 * 329.99792 * 21 19 17 25 25 H 1.08998 * 109.46913 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46688 * 299.99613 * 1 2 3 27 27 H 1.08998 * 109.46942 * 60.00193 * 1 2 3 28 28 H 1.09003 * 109.46987 * 239.99474 * 2 1 3 29 29 H 1.09006 * 109.47134 * 120.00429 * 2 1 3 30 30 H 1.09005 * 109.47610 * 65.00133 * 5 3 2 31 31 H 1.09000 * 109.47256 * 304.99474 * 5 3 2 32 32 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 33 33 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 34 34 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 36 36 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 37 37 H 0.96993 * 120.00529 * 264.99746 * 12 3 2 38 38 H 1.09001 * 109.47206 * 299.99726 * 15 13 12 39 39 H 1.08998 * 109.47129 * 60.00365 * 15 13 12 40 40 H 0.97003 * 119.99266 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 6 4.0570 2.8633 0.2492 7 6 4.1847 3.4444 1.4969 8 6 4.6367 4.7459 1.6102 9 6 4.9616 5.4660 0.4758 10 6 4.8289 4.8866 -0.7722 11 6 4.3813 3.5836 -0.8852 12 7 1.6525 2.0974 -1.2518 13 6 0.4351 2.6643 -1.3669 14 8 -0.3392 2.6326 -0.4341 15 6 0.0367 3.3386 -2.6545 16 16 -1.6423 3.9959 -2.4968 17 6 -1.8434 4.7084 -4.0957 18 1 -1.0430 4.6482 -4.8182 19 6 -3.0309 5.3462 -4.4270 20 7 -3.1813 5.8779 -5.6217 21 14 -4.4156 5.4497 -3.1774 22 1 -4.2642 6.6883 -2.3723 23 1 -5.7205 5.4761 -3.8857 24 1 -4.3628 4.2670 -2.2809 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 4.0030 0.9835 -0.7597 31 1 3.8571 0.8800 1.0113 32 1 3.9313 2.8817 2.3833 33 1 4.7360 5.2001 2.5850 34 1 5.3151 6.4826 0.5644 35 1 5.0785 5.4506 -1.6587 36 1 4.2823 3.1293 -1.8600 37 1 2.2719 2.1231 -1.9978 38 1 0.7281 4.1541 -2.8666 39 1 0.0680 2.6145 -3.4686 40 1 -4.0110 6.3239 -5.8530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170816508.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:35 Heat of formation + Delta-G solvation = -50.834056 kcal Electronic energy + Delta-G solvation = -20865.479994 eV Core-core repulsion = 17769.728001 eV Total energy + Delta-G solvation = -3095.751993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.10783 -39.93209 -37.22350 -34.67696 -33.64942 -33.20166 -31.72130 -30.65666 -28.92458 -27.84470 -24.99799 -23.48332 -22.46619 -21.85772 -21.42915 -19.85648 -17.92044 -17.64163 -17.37058 -17.07057 -16.72294 -16.04501 -15.98694 -15.67276 -15.05587 -14.92022 -14.73883 -14.56899 -14.23125 -14.15124 -13.66191 -13.44773 -13.34459 -13.20069 -13.01902 -12.76348 -12.64432 -12.40464 -12.12018 -11.86556 -11.80089 -11.73813 -11.65757 -11.17626 -10.83729 -10.52754 -10.00424 -9.75870 -9.52758 -8.98421 -8.52111 -6.22020 0.48853 0.54811 1.00084 1.30332 1.46446 1.56803 1.67529 2.23771 2.32856 2.73595 2.86359 2.90391 3.72159 3.89167 3.98551 4.04184 4.19410 4.22201 4.25579 4.29238 4.35883 4.46338 4.47708 4.64834 4.67465 4.73597 4.86219 4.95034 5.07209 5.09774 5.20740 5.23337 5.26655 5.52220 5.58894 5.61388 5.67672 5.70292 5.76970 6.10738 6.17737 6.56084 6.93414 7.30933 8.60518 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.004202 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.532673 B = 6661.256621 C = 7676.563276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.153 3.847 4 H 0.064 0.936 5 C -0.078 4.078 6 C -0.089 4.089 7 C -0.131 4.131 8 C -0.132 4.132 9 C -0.140 4.140 10 C -0.134 4.134 11 C -0.125 4.125 12 N -0.705 5.705 13 C 0.537 3.463 14 O -0.552 6.552 15 C -0.112 4.112 16 S -0.172 6.172 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.047 3.953 20 N -0.918 5.918 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.258 1.258 24 H -0.237 1.237 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.411 0.589 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.485 -10.116 13.183 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.082 0.918 5 C -0.115 4.115 6 C -0.089 4.089 7 C -0.149 4.149 8 C -0.150 4.150 9 C -0.158 4.158 10 C -0.152 4.152 11 C -0.143 4.143 12 N -0.359 5.359 13 C 0.322 3.678 14 O -0.429 6.429 15 C -0.263 4.263 16 S 0.054 5.946 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.158 4.158 20 N -0.556 5.556 21 Si 0.735 3.265 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.161 1.161 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.247 0.753 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.118 -10.090 14.601 25.363 hybrid contribution 0.257 0.817 -1.577 1.794 sum 18.375 -9.273 13.024 24.357 Atomic orbital electron populations 1.21766 0.97043 1.00396 1.01128 1.21943 0.94964 0.95457 1.03968 1.21080 0.94609 0.93223 0.86220 0.91807 1.20922 0.92112 0.92686 1.05805 1.20038 0.98703 0.96948 0.93246 1.21340 0.99921 0.95794 0.97808 1.21421 0.99324 0.94956 0.99317 1.21423 1.00733 1.00630 0.92977 1.21439 0.99726 0.95859 0.98149 1.21297 0.99403 0.94749 0.98823 1.45813 1.15211 1.57375 1.17478 1.19754 0.82323 0.77790 0.87945 1.90692 1.52085 1.59277 1.40892 1.23280 0.99690 1.03656 0.99704 1.84669 1.16767 1.72994 1.20152 1.22481 1.04919 1.41538 0.98772 0.92127 1.25542 1.00097 0.93275 0.96905 1.70020 1.27964 1.36506 1.21080 0.85882 0.79429 0.81129 0.80020 1.18799 1.18258 1.16087 0.92572 0.94246 0.94943 0.90248 0.88774 0.88200 0.87248 0.84826 0.84836 0.85113 0.85180 0.84748 0.75267 0.87626 0.87265 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.52 71.98 0.61 -3.13 16 2 C -0.13 -2.16 5.61 30.59 0.17 -1.99 16 3 C 0.15 2.93 2.24 44.99 0.10 3.03 16 4 H 0.06 1.61 7.58 -2.39 -0.02 1.60 16 5 C -0.08 -0.98 4.89 29.85 0.15 -0.83 16 6 C -0.09 -1.56 4.95 -19.86 -0.10 -1.65 16 7 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 8 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 9 C -0.14 -2.71 10.05 22.27 0.22 -2.48 16 10 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 11 C -0.12 -2.26 9.10 22.27 0.20 -2.06 16 12 N -0.71 -16.07 4.48 -442.54 -1.98 -18.05 16 13 C 0.54 18.15 6.42 87.66 0.56 18.71 16 14 O -0.55 -22.81 13.00 -3.00 -0.04 -22.85 16 15 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 16 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 17 C -0.53 -31.14 10.04 67.96 0.68 -30.46 16 18 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 19 C 0.05 2.79 5.50 84.86 0.47 3.26 16 20 N -0.92 -56.29 13.97 21.65 0.30 -55.99 16 21 Si 0.91 45.46 27.74 68.60 1.90 47.36 16 22 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 1.15 7.85 -2.39 -0.02 1.13 16 27 H 0.03 1.02 5.65 -2.39 -0.01 1.01 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.17 16 30 H 0.10 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.11 0.96 8.09 -2.39 -0.02 0.94 16 32 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.13 1.87 7.57 -2.91 -0.02 1.85 16 37 H 0.41 6.99 7.83 -92.71 -0.73 6.27 16 38 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 39 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 40 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -74.22 343.88 3.57 -70.65 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.26 Total: 16.99 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 4.17 Total: -28.27 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -1.68 Total: -74.04 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.04 Total: -22.85 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -74.22 3.57 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170816508.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.811 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds