Wall clock time and date at job start Tue Mar 31 2020 07:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21277 * 120.00549 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99847 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47081 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00192 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.00306 * 179.97438 * 9 8 7 12 12 N 1.31628 * 120.00100 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47419 * 60.00063 * 13 11 9 15 15 H 1.48502 * 109.47029 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47174 * 299.99701 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.47375 * 300.00034 * 17 2 1 19 19 C 1.52996 * 109.46975 * 179.97438 * 17 2 1 20 20 C 1.50703 * 109.47084 * 59.99992 * 17 2 1 21 21 C 1.38240 * 120.00180 * 59.72852 * 20 17 2 22 22 C 1.38236 * 120.00071 * 179.78892 * 21 20 17 23 23 C 1.38235 * 119.99863 * 0.43952 * 22 21 20 24 24 C 1.38239 * 119.99929 * 359.81286 * 23 22 21 25 25 C 1.38232 * 120.00078 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 30 30 H 1.08988 * 109.47257 * 300.00034 * 7 5 4 31 31 H 1.08997 * 109.47148 * 60.00429 * 7 5 4 32 32 H 0.96996 * 120.00308 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.47367 * 299.99815 * 19 17 2 34 34 H 1.09004 * 109.47368 * 60.00217 * 19 17 2 35 35 H 1.09004 * 109.47108 * 180.02562 * 19 17 2 36 36 H 1.08004 * 119.99557 * 359.97438 * 21 20 17 37 37 H 1.07993 * 119.99705 * 180.27073 * 22 21 20 38 38 H 1.07998 * 119.99831 * 179.83250 * 23 22 21 39 39 H 1.08005 * 119.99830 * 180.02562 * 24 23 22 40 40 H 1.08003 * 119.99961 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6499 -0.7287 3.5874 8 16 2.7113 0.4344 4.9729 9 6 3.3157 -0.6305 6.2399 10 1 3.5249 -1.6670 6.0199 11 6 3.5230 -0.1374 7.5206 12 7 3.2675 1.1257 7.7889 13 14 4.1631 -1.2666 8.8639 14 1 5.4891 -1.8050 8.4679 15 1 4.2965 -0.5030 10.1306 16 1 3.2118 -2.3897 9.0616 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2493 19 6 3.5700 -0.7206 -1.2495 20 6 1.5377 -0.0107 -2.4797 21 6 1.8670 1.3145 -2.6956 22 6 1.4098 1.9649 -3.8264 23 6 0.6158 1.2928 -4.7368 24 6 0.2822 -0.0308 -4.5183 25 6 0.7431 -0.6824 -3.3897 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.2491 -1.6318 1.1525 30 1 1.9778 -1.5510 3.8324 31 1 3.6492 -1.1204 3.3978 32 1 3.4127 1.4704 8.6839 33 1 3.9330 0.3072 -1.2497 34 1 3.9338 -1.2342 -0.3596 35 1 3.9334 -1.2340 -2.1398 36 1 2.4840 1.8407 -1.9822 37 1 1.6707 2.9988 -3.9972 38 1 0.2564 1.8018 -5.6190 39 1 -0.3378 -0.5559 -5.2298 40 1 0.4827 -1.7167 -3.2192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177147357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:46 Heat of formation + Delta-G solvation = -50.335570 kcal Electronic energy + Delta-G solvation = -20394.311507 eV Core-core repulsion = 17298.581130 eV Total energy + Delta-G solvation = -3095.730377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13960 -40.10713 -37.45031 -34.58510 -34.25353 -31.79072 -31.73843 -30.25794 -29.70596 -27.65057 -25.05436 -23.84361 -23.28764 -21.59676 -21.01179 -19.79699 -18.09759 -17.49229 -17.35112 -16.87449 -16.41606 -16.19110 -15.78933 -15.67833 -15.03553 -14.81283 -14.52652 -14.50296 -14.33735 -14.09948 -13.70471 -13.57022 -13.16562 -13.16337 -12.92420 -12.86123 -12.64746 -12.58998 -12.27146 -12.00134 -11.78480 -11.70287 -11.46310 -11.12507 -10.90180 -10.26943 -10.16544 -9.77064 -9.53153 -8.66196 -8.34035 -6.12196 0.47579 0.54956 1.27603 1.44214 1.47412 1.57210 1.64501 2.26372 2.30768 2.92264 2.99919 3.32760 3.61648 3.78135 4.00046 4.06384 4.13791 4.20141 4.30817 4.32361 4.34304 4.50874 4.52123 4.56534 4.67009 4.73088 4.77553 4.89047 4.98533 5.10220 5.17076 5.20745 5.24930 5.32658 5.41905 5.52715 5.64129 5.68189 5.76704 6.16506 6.20056 6.54720 7.07025 7.28726 8.74971 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.044210 B = 0.002680 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.191905 B =10444.571793 C =10616.410159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.153 3.847 3 H 0.061 0.939 4 N -0.706 5.706 5 C 0.535 3.465 6 O -0.566 6.566 7 C -0.129 4.129 8 S -0.153 6.153 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 0.999 3.001 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.262 1.262 17 C -0.047 4.047 18 H 0.107 0.893 19 C -0.144 4.144 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.416 0.584 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.271 0.729 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -8.200 -25.999 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.080 0.920 4 N -0.360 5.360 5 C 0.321 3.679 6 O -0.444 6.444 7 C -0.280 4.280 8 S 0.074 5.926 9 C -0.694 4.694 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.549 5.549 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.066 4.066 18 H 0.125 0.875 19 C -0.201 4.201 20 C -0.078 4.078 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.253 0.747 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.252 -6.119 -25.805 26.859 hybrid contribution 0.762 -1.597 1.036 2.050 sum -3.490 -7.716 -24.768 26.176 Atomic orbital electron populations 1.22102 0.94976 1.02853 1.01409 1.20978 0.94221 0.96500 0.83473 0.92033 1.45794 1.67443 1.14538 1.08217 1.20049 0.76661 0.86574 0.84612 1.90689 1.50734 1.17836 1.85152 1.23374 1.05540 1.03138 0.95965 1.85597 1.86683 1.17420 1.02906 1.23174 1.50878 0.98482 0.96854 0.89865 1.26142 0.95111 0.97214 1.00782 1.70179 1.46827 1.15526 1.22322 0.85000 0.79102 0.77728 0.76144 1.18600 1.20458 1.18629 1.20356 0.96511 0.99960 0.89750 0.87489 1.21845 0.93546 1.02002 1.02714 1.19702 0.98050 0.94060 0.95940 1.21158 1.00759 0.94981 0.98018 1.21368 0.98300 1.00624 0.94530 1.21444 0.98299 0.95316 0.99853 1.21457 0.99936 0.94995 0.97834 1.21312 0.97309 1.00822 0.94247 0.90605 0.94945 0.91049 0.74696 0.87234 0.87169 0.92013 0.93669 0.91699 0.91057 0.87071 0.85254 0.84422 0.83983 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.24 71.98 0.67 -2.89 16 2 C 0.15 3.53 1.98 44.99 0.09 3.62 16 3 H 0.06 1.81 6.81 -2.39 -0.02 1.79 16 4 N -0.71 -17.60 4.38 -442.54 -1.94 -19.54 16 5 C 0.54 19.75 7.81 87.66 0.68 20.44 16 6 O -0.57 -26.54 15.52 -3.02 -0.05 -26.58 16 7 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 8 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 9 C -0.55 -31.26 9.50 67.95 0.65 -30.61 16 10 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 11 C 0.01 0.70 5.49 84.86 0.47 1.16 16 12 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 13 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 C -0.05 -0.76 2.21 -11.54 -0.03 -0.78 16 18 H 0.11 1.25 7.88 -2.39 -0.02 1.23 16 19 C -0.14 -2.35 8.85 71.98 0.64 -1.72 16 20 C -0.08 -1.30 3.52 -19.86 -0.07 -1.37 16 21 C -0.13 -2.52 8.71 22.27 0.19 -2.33 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 24 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 25 C -0.12 -1.67 9.67 22.27 0.22 -1.46 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.52 7.22 -2.39 -0.02 1.50 16 29 H 0.42 7.28 8.39 -92.71 -0.78 6.51 16 30 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 31 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.04 0.87 7.40 -2.39 -0.02 0.85 16 34 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 36 H 0.11 2.31 7.10 -2.91 -0.02 2.29 16 37 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.14 1.36 7.95 -2.91 -0.02 1.34 16 Total: -1.00 -76.40 349.03 4.03 -72.37 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.25 Total: 19.58 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.61 Total: -25.64 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -1.65 Total: -75.68 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -76.40 4.03 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177147357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.039 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds