Wall clock time and date at job start Tue Mar 31 2020 07:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47213 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46950 * 120.00258 * 13 11 9 16 16 H 1.48503 * 109.47177 * 240.00017 * 13 11 9 17 17 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 18 18 H 1.09002 * 109.46830 * 60.00508 * 17 2 1 19 19 C 1.53000 * 109.47187 * 180.02562 * 17 2 1 20 20 C 1.50696 * 109.47467 * 300.00424 * 17 2 1 21 21 C 1.38234 * 120.00030 * 299.72827 * 20 17 2 22 22 C 1.38237 * 119.99942 * 179.78731 * 21 20 17 23 23 C 1.38227 * 120.00091 * 0.43953 * 22 21 20 24 24 C 1.38240 * 119.99931 * 359.81029 * 23 22 21 25 25 C 1.38225 * 119.99983 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 30 30 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 31 31 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 32 32 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.46821 * 60.00502 * 19 17 2 34 34 H 1.08998 * 109.47335 * 179.97438 * 19 17 2 35 35 H 1.09002 * 109.47254 * 300.00861 * 19 17 2 36 36 H 1.08000 * 120.00121 * 359.97438 * 21 20 17 37 37 H 1.08003 * 119.99623 * 180.27146 * 22 21 20 38 38 H 1.08002 * 120.00043 * 179.83671 * 23 22 21 39 39 H 1.08003 * 119.99734 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.00285 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4118 7 6 2.6500 -0.7286 -3.5874 8 16 2.7100 0.4342 -4.9733 9 6 3.3147 -0.6306 -6.2401 10 1 3.5255 -1.6666 -6.0197 11 6 3.5211 -0.1376 -7.5211 12 7 3.2657 1.1255 -7.7894 13 14 4.1629 -1.2664 -8.8641 14 1 4.3696 -2.6282 -8.3092 15 1 3.1761 -1.3284 -9.9721 16 1 5.4526 -0.7401 -9.3787 17 6 2.0400 -0.7211 1.2493 18 1 1.6767 -1.7488 1.2493 19 6 3.5700 -0.7206 1.2496 20 6 1.5376 -0.0107 2.4797 21 6 1.8761 1.3111 2.7013 22 6 1.4117 1.9640 3.8277 23 6 0.6163 1.2925 4.7372 24 6 0.2820 -0.0309 4.5182 25 6 0.7428 -0.6825 3.3896 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 2.2491 -1.6317 -1.1525 30 1 3.6494 -1.1203 -3.3979 31 1 1.9778 -1.5509 -3.8325 32 1 3.4096 1.4699 -8.6847 33 1 3.9329 0.3073 1.2498 34 1 3.9334 -1.2339 2.1398 35 1 3.9337 -1.2341 0.3596 36 1 2.5009 1.8346 1.9928 37 1 1.6726 2.9980 3.9986 38 1 0.2556 1.8018 5.6186 39 1 -0.3391 -0.5557 5.2290 40 1 0.4813 -1.7163 3.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177147368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:51 Heat of formation + Delta-G solvation = -29.929591 kcal Electronic energy + Delta-G solvation = -20392.922812 eV Core-core repulsion = 17298.077304 eV Total energy + Delta-G solvation = -3094.845507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15890 -39.00829 -36.40995 -33.15273 -32.42158 -31.13042 -30.56120 -29.51105 -28.36161 -25.47966 -24.26051 -23.03846 -22.49798 -20.26563 -20.15883 -17.85508 -17.11710 -16.28843 -16.23479 -15.35041 -15.04088 -14.88503 -14.79939 -14.12429 -14.02833 -13.75886 -13.60279 -13.44355 -13.16279 -12.91063 -12.55957 -12.38346 -12.27896 -11.88171 -11.76035 -11.41289 -11.22248 -11.06779 -11.05464 -11.01158 -10.76428 -10.64525 -9.79524 -9.35576 -9.13147 -9.07890 -9.03074 -8.73406 -8.21813 -6.48863 -6.21184 -3.91373 1.13109 1.19041 3.05126 3.13432 3.21854 3.28645 3.33351 3.56318 3.74443 4.20996 4.42376 4.51331 4.76865 4.78830 4.91186 4.93545 5.11719 5.14042 5.17700 5.26784 5.31439 5.38483 5.50952 5.60626 5.65486 5.70886 5.77527 5.82005 5.85028 5.90904 6.01499 6.09117 6.15673 6.25065 6.25658 6.31217 6.44755 6.70643 6.79225 7.60498 7.75833 8.36072 8.65979 9.24300 10.86302 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.044200 B = 0.002680 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.334813 B =10446.039274 C =10617.105281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.152 3.848 3 H 0.089 0.911 4 N -0.734 5.734 5 C 0.533 3.467 6 O -0.517 6.517 7 C -0.153 4.153 8 S -0.061 6.061 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.060 4.060 18 H 0.082 0.918 19 C -0.144 4.144 20 C -0.067 4.067 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.396 0.604 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.268 0.732 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -5.189 24.504 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.107 0.893 4 N -0.388 5.388 5 C 0.319 3.681 6 O -0.391 6.391 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.137 4.137 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.079 4.079 18 H 0.101 0.899 19 C -0.202 4.202 20 C -0.067 4.067 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.134 4.134 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.191 -3.068 24.267 24.816 hybrid contribution 0.786 -2.529 -0.754 2.753 sum -3.405 -5.597 23.513 24.409 Atomic orbital electron populations 1.22180 0.95355 1.01923 1.02613 1.20893 0.94019 0.97394 0.82965 0.89329 1.46071 1.69353 1.13833 1.09497 1.20287 0.76842 0.87231 0.83722 1.90696 1.48292 1.15782 1.84371 1.23536 1.03619 1.04833 0.98418 1.85400 1.86249 1.12977 0.98804 1.22908 1.50745 0.98212 0.96385 0.90906 1.24999 0.95142 0.95538 0.97978 1.70027 1.45650 1.13212 1.21410 0.86118 0.78520 0.80125 0.80720 1.19631 1.20579 1.20573 1.20446 0.96577 0.99282 0.91579 0.89949 1.21846 0.93580 1.02705 1.02020 1.19672 0.97276 0.94238 0.95519 1.21088 1.00006 0.94322 0.97616 1.21162 0.97903 0.99919 0.94534 1.21141 0.98900 0.94921 0.99490 1.21116 1.00122 0.94995 0.97600 1.21050 0.98035 0.99860 0.94465 0.92710 0.91842 0.91744 0.76979 0.89292 0.89293 0.92251 0.92177 0.92444 0.91778 0.85874 0.86080 0.86319 0.86242 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.24 37.16 0.34 -1.59 16 2 C 0.15 1.82 1.98 -67.94 -0.13 1.68 16 3 H 0.09 1.25 6.84 -51.93 -0.36 0.90 16 4 N -0.73 -9.66 4.38 -53.81 -0.24 -9.89 16 5 C 0.53 9.86 7.81 -10.98 -0.09 9.77 16 6 O -0.52 -11.68 15.53 5.56 0.09 -11.59 16 7 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 8 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 9 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 13 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.06 -0.54 2.21 -91.78 -0.20 -0.75 16 18 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 19 C -0.14 -1.30 8.84 37.16 0.33 -0.97 16 20 C -0.07 -0.62 3.52 -104.63 -0.37 -0.99 16 21 C -0.11 -1.09 8.71 -39.58 -0.34 -1.43 16 22 C -0.12 -1.03 10.05 -39.59 -0.40 -1.42 16 23 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 25 C -0.12 -0.98 9.67 -39.59 -0.38 -1.36 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.71 7.22 -51.93 -0.37 0.33 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.40 4.07 8.39 -40.82 -0.34 3.73 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 0.58 7.37 -51.93 -0.38 0.20 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 36 H 0.12 1.19 7.10 -52.49 -0.37 0.81 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.12 0.82 7.95 -52.49 -0.42 0.41 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -33.94 349.03 -8.98 -42.92 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.97 Total: 1.91 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.62 Total: -15.65 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.50 Total: -35.40 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.94 -8.98 -42.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177147368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.988 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds