Wall clock time and date at job start Tue Mar 31 2020 07:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47213 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46950 * 120.00258 * 13 11 9 16 16 H 1.48503 * 109.47177 * 240.00017 * 13 11 9 17 17 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 18 18 H 1.09002 * 109.46830 * 60.00508 * 17 2 1 19 19 C 1.53000 * 109.47187 * 180.02562 * 17 2 1 20 20 C 1.50696 * 109.47467 * 300.00424 * 17 2 1 21 21 C 1.38234 * 120.00030 * 299.72827 * 20 17 2 22 22 C 1.38237 * 119.99942 * 179.78731 * 21 20 17 23 23 C 1.38227 * 120.00091 * 0.43953 * 22 21 20 24 24 C 1.38240 * 119.99931 * 359.81029 * 23 22 21 25 25 C 1.38225 * 119.99983 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 28 28 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 29 29 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 30 30 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 31 31 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 32 32 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.46821 * 60.00502 * 19 17 2 34 34 H 1.08998 * 109.47335 * 179.97438 * 19 17 2 35 35 H 1.09002 * 109.47254 * 300.00861 * 19 17 2 36 36 H 1.08000 * 120.00121 * 359.97438 * 21 20 17 37 37 H 1.08003 * 119.99623 * 180.27146 * 22 21 20 38 38 H 1.08002 * 120.00043 * 179.83671 * 23 22 21 39 39 H 1.08003 * 119.99734 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.00285 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4118 7 6 2.6500 -0.7286 -3.5874 8 16 2.7100 0.4342 -4.9733 9 6 3.3147 -0.6306 -6.2401 10 1 3.5255 -1.6666 -6.0197 11 6 3.5211 -0.1376 -7.5211 12 7 3.2657 1.1255 -7.7894 13 14 4.1629 -1.2664 -8.8641 14 1 4.3696 -2.6282 -8.3092 15 1 3.1761 -1.3284 -9.9721 16 1 5.4526 -0.7401 -9.3787 17 6 2.0400 -0.7211 1.2493 18 1 1.6767 -1.7488 1.2493 19 6 3.5700 -0.7206 1.2496 20 6 1.5376 -0.0107 2.4797 21 6 1.8761 1.3111 2.7013 22 6 1.4117 1.9640 3.8277 23 6 0.6163 1.2925 4.7372 24 6 0.2820 -0.0309 4.5182 25 6 0.7428 -0.6825 3.3896 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 2.2491 -1.6317 -1.1525 30 1 3.6494 -1.1203 -3.3979 31 1 1.9778 -1.5509 -3.8325 32 1 3.4096 1.4699 -8.6847 33 1 3.9329 0.3073 1.2498 34 1 3.9334 -1.2339 2.1398 35 1 3.9337 -1.2341 0.3596 36 1 2.5009 1.8346 1.9928 37 1 1.6726 2.9980 3.9986 38 1 0.2556 1.8018 5.6186 39 1 -0.3391 -0.5557 5.2290 40 1 0.4813 -1.7163 3.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177147368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:50 Heat of formation + Delta-G solvation = -50.454377 kcal Electronic energy + Delta-G solvation = -20393.812833 eV Core-core repulsion = 17298.077304 eV Total energy + Delta-G solvation = -3095.735529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13883 -40.10761 -37.45060 -34.58703 -34.25415 -31.78983 -31.74186 -30.25371 -29.70694 -27.65624 -25.05630 -23.84137 -23.28783 -21.59707 -21.01192 -19.80064 -18.09734 -17.49161 -17.35488 -16.88011 -16.41558 -16.19094 -15.78779 -15.68173 -15.03520 -14.81242 -14.52748 -14.50851 -14.34049 -14.09666 -13.70247 -13.56985 -13.16564 -13.15559 -12.93101 -12.90482 -12.63733 -12.56935 -12.27254 -11.99894 -11.76625 -11.68772 -11.46284 -11.15736 -10.90174 -10.26252 -10.16558 -9.77063 -9.53134 -8.66249 -8.34594 -6.12423 0.47595 0.54983 1.27793 1.41549 1.47782 1.58803 1.64482 2.25912 2.30583 2.92307 2.99607 3.32622 3.61654 3.78146 4.00043 4.06385 4.13799 4.20189 4.30808 4.32306 4.34362 4.50846 4.52098 4.56565 4.66990 4.73126 4.77554 4.89054 4.98573 5.10204 5.17093 5.20759 5.24963 5.32653 5.42402 5.52759 5.64143 5.68218 5.76724 6.16524 6.20353 6.54713 7.06841 7.28724 8.74904 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.044200 B = 0.002680 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.334813 B =10446.039274 C =10617.105281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.153 3.847 3 H 0.061 0.939 4 N -0.706 5.706 5 C 0.535 3.465 6 O -0.566 6.566 7 C -0.129 4.129 8 S -0.154 6.154 9 C -0.544 4.544 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 1.000 3.000 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.047 4.047 18 H 0.107 0.893 19 C -0.144 4.144 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.416 0.584 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.271 0.729 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 -8.199 26.019 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.080 0.920 4 N -0.360 5.360 5 C 0.321 3.679 6 O -0.444 6.444 7 C -0.280 4.280 8 S 0.073 5.927 9 C -0.692 4.692 10 H 0.101 0.899 11 C -0.193 4.193 12 N -0.549 5.549 13 Si 0.821 3.179 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.066 4.066 18 H 0.125 0.875 19 C -0.201 4.201 20 C -0.078 4.078 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.253 0.747 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.244 -6.124 25.831 26.884 hybrid contribution 0.761 -1.581 -1.047 2.044 sum -3.483 -7.706 24.783 26.186 Atomic orbital electron populations 1.22101 0.94976 1.02852 1.01407 1.20974 0.94221 0.96495 0.83470 0.92041 1.45794 1.67441 1.14536 1.08223 1.20051 0.76665 0.86570 0.84610 1.90689 1.50718 1.17852 1.85149 1.23376 1.05543 1.03132 0.95956 1.85603 1.86668 1.17477 1.02907 1.23232 1.50648 0.98489 0.96795 0.89882 1.26147 0.95141 0.97211 1.00805 1.70190 1.46965 1.15506 1.22209 0.84895 0.77806 0.78227 0.76943 1.17960 1.19967 1.19952 1.20355 0.96509 0.99956 0.89756 0.87494 1.21846 0.93545 1.02009 1.02715 1.19700 0.98040 0.94103 0.95911 1.21157 1.00686 0.95013 0.98058 1.21369 0.98273 1.00597 0.94587 1.21443 0.98325 0.95317 0.99831 1.21455 0.99924 0.95001 0.97841 1.21311 0.97358 1.00802 0.94222 0.90605 0.91044 0.94951 0.74700 0.87167 0.87237 0.92020 0.93659 0.91057 0.91699 0.87058 0.85252 0.84424 0.83985 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.24 71.98 0.66 -2.89 16 2 C 0.15 3.53 1.98 44.99 0.09 3.62 16 3 H 0.06 1.80 6.84 -2.39 -0.02 1.79 16 4 N -0.71 -17.59 4.38 -442.54 -1.94 -19.53 16 5 C 0.54 19.75 7.81 87.66 0.68 20.43 16 6 O -0.57 -26.53 15.53 -3.03 -0.05 -26.58 16 7 C -0.13 -5.08 6.16 71.24 0.44 -4.65 16 8 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 9 C -0.54 -31.12 9.50 67.96 0.65 -30.47 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.66 5.49 84.86 0.47 1.12 16 12 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 13 Si 1.00 43.71 29.55 68.60 2.03 45.73 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 C -0.05 -0.76 2.21 -11.54 -0.03 -0.78 16 18 H 0.11 1.25 7.88 -2.39 -0.02 1.23 16 19 C -0.14 -2.35 8.84 71.98 0.64 -1.72 16 20 C -0.08 -1.30 3.52 -19.87 -0.07 -1.37 16 21 C -0.13 -2.52 8.71 22.27 0.19 -2.32 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 23 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 24 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 25 C -0.12 -1.67 9.67 22.27 0.22 -1.46 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.52 7.22 -2.39 -0.02 1.51 16 28 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.42 7.29 8.39 -92.71 -0.78 6.51 16 30 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.04 0.87 7.37 -2.39 -0.02 0.86 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 36 H 0.11 2.30 7.10 -2.91 -0.02 2.28 16 37 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.14 1.36 7.95 -2.91 -0.02 1.34 16 Total: -1.00 -76.43 349.03 4.03 -72.40 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.25 Total: 19.34 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 4.61 Total: -25.52 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.65 Total: -75.63 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -76.43 4.03 -72.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177147368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.949 kcal (2) G-P(sol) polarization free energy of solvation -76.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds