Wall clock time and date at job start Tue Mar 31 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46920 * 2 1 4 4 H 1.08994 * 109.46929 * 55.00167 * 3 2 1 5 5 C 1.50703 * 109.46730 * 175.00556 * 3 2 1 6 6 H 1.07992 * 120.00242 * 119.99924 * 5 3 2 7 7 C 1.37876 * 119.99649 * 299.99692 * 5 3 2 8 8 N 1.31519 * 120.00367 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99712 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47439 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47048 * 120.00230 * 9 7 5 12 12 H 1.48500 * 109.47221 * 240.00134 * 9 7 5 13 13 N 1.46498 * 109.47251 * 295.00092 * 3 2 1 14 14 C 1.34779 * 119.99939 * 84.99967 * 13 3 2 15 15 O 1.21551 * 119.99935 * 0.02562 * 14 13 3 16 16 C 1.47863 * 120.00123 * 179.72073 * 14 13 3 17 17 C 1.39466 * 120.10565 * 354.00649 * 16 14 13 18 18 C 1.38707 * 119.77039 * 179.72011 * 17 16 14 19 19 S 1.76194 * 120.01427 * 180.27578 * 18 17 16 20 20 C 1.81403 * 103.00118 * 180.29879 * 19 18 17 21 21 C 1.39094 * 119.97455 * 0.57136 * 18 17 16 22 22 C 1.38177 * 120.21369 * 359.70267 * 21 18 17 23 23 C 1.38040 * 120.23643 * 359.97438 * 22 21 18 24 24 C 1.50702 * 119.99284 * 179.97438 * 23 22 21 25 25 H 1.09000 * 109.46945 * 299.99915 * 1 2 3 26 26 H 1.08998 * 109.47168 * 59.99857 * 1 2 3 27 27 H 1.08997 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46596 * 240.00780 * 2 1 3 29 29 H 1.08988 * 109.47222 * 120.00692 * 2 1 3 30 30 H 0.96998 * 119.99912 * 179.97438 * 8 7 5 31 31 H 0.97000 * 120.00629 * 265.00390 * 13 3 2 32 32 H 1.07999 * 120.12027 * 359.97438 * 17 16 14 33 33 H 1.08999 * 109.47190 * 300.00072 * 20 19 18 34 34 H 1.08995 * 109.47025 * 59.99932 * 20 19 18 35 35 H 1.08999 * 109.47108 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.88950 * 179.67780 * 21 18 17 37 37 H 1.08003 * 119.87797 * 179.97438 * 22 21 18 38 38 H 1.09002 * 109.47067 * 263.40599 * 24 23 22 39 39 H 1.08997 * 109.47116 * 23.40412 * 24 23 22 40 40 H 1.09000 * 109.47288 * 143.40804 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8812 1.3815 10 1 6.5988 1.5472 0.1945 11 1 6.3992 1.6166 2.6100 12 1 6.4971 -0.5176 1.4626 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3410 2.6326 -0.4319 16 6 0.0462 3.3309 -2.6282 17 6 0.9780 3.4846 -3.6544 18 6 0.6040 4.1057 -4.8369 19 16 1.7741 4.2967 -6.1404 20 6 0.8193 5.1524 -7.4237 21 6 -0.6932 4.5832 -4.9910 22 6 -1.6142 4.4356 -3.9715 23 6 -1.2534 3.8129 -2.7936 24 6 -2.2621 3.6554 -1.6850 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8295 -0.0619 2.9494 31 1 2.2718 2.1232 -1.9978 32 1 1.9861 3.1176 -3.5305 33 1 -0.0333 4.5379 -7.7127 34 1 0.4641 6.1073 -7.0363 35 1 1.4534 5.3267 -8.2929 36 1 -0.9815 5.0712 -5.9104 37 1 -2.6199 4.8088 -4.0968 38 1 -2.1381 4.4630 -0.9635 39 1 -3.2686 3.6919 -2.1018 40 1 -2.1091 2.6975 -1.1880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183826005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:59 Heat of formation + Delta-G solvation = -20.457698 kcal Electronic energy + Delta-G solvation = -21278.130293 eV Core-core repulsion = 18183.695518 eV Total energy + Delta-G solvation = -3094.434775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00030 -38.04787 -35.15701 -32.90962 -32.36351 -31.60930 -30.42126 -29.18029 -27.33341 -26.57757 -23.75112 -22.90507 -21.65018 -20.45192 -19.35893 -18.17798 -16.59656 -16.08722 -15.79547 -15.27997 -14.90799 -14.77211 -14.51606 -14.18067 -14.04668 -13.59265 -13.36081 -13.06971 -12.75324 -12.68384 -12.19839 -12.14860 -11.80789 -11.64092 -11.48060 -11.36227 -11.24214 -10.94133 -10.83701 -10.36268 -10.29780 -10.16512 -9.63086 -9.51114 -9.04071 -8.98154 -8.85340 -8.48916 -7.82794 -7.44153 -6.12015 -4.21184 0.93773 1.22289 1.36219 2.24416 3.20868 3.24710 3.32788 3.35712 4.03948 4.08276 4.37991 4.71596 4.77293 4.77360 4.79610 5.07896 5.19662 5.24437 5.36821 5.47853 5.56608 5.72388 5.93918 6.05134 6.10958 6.18880 6.37347 6.40274 6.47194 6.64339 6.69746 6.86794 7.05983 7.20010 7.36771 7.44442 7.62777 7.73552 7.90479 8.18226 8.64826 8.77604 9.09799 9.46108 10.93338 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.004496 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.779759 B = 6226.439729 C = 7597.998078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.542 3.458 15 O -0.536 6.536 16 C -0.108 4.108 17 C -0.063 4.063 18 C -0.102 4.102 19 S -0.118 6.118 20 C -0.145 4.145 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.030 4.030 24 C -0.119 4.119 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.712 7.804 -16.217 19.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.328 3.672 15 O -0.416 6.416 16 C -0.113 4.113 17 C -0.087 4.087 18 C -0.215 4.215 19 S 0.124 5.876 20 C -0.313 4.313 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.033 4.033 24 C -0.176 4.176 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.014 7.360 -15.513 18.548 hybrid contribution 0.051 0.413 -0.328 0.530 sum -6.963 7.773 -15.841 18.970 Atomic orbital electron populations 1.21848 0.98357 0.98086 1.01201 1.21938 0.92646 0.99726 1.02337 1.18832 0.94306 0.89213 0.80779 0.93081 1.21267 0.90681 1.38967 1.06322 0.92041 1.24872 0.98599 0.94767 0.95356 1.69904 1.35023 1.37645 1.09355 0.86411 0.84893 0.77776 0.78142 1.19711 1.20884 1.20865 1.46500 1.14244 1.55399 1.18621 1.18063 0.83050 0.79419 0.86683 1.90686 1.50622 1.60564 1.39773 1.20141 0.94218 1.01661 0.95306 1.20974 0.99506 0.97182 0.91001 1.21536 0.96964 1.04789 0.98169 1.85600 1.17960 1.73643 1.10440 1.23655 1.04055 1.03230 1.00410 1.21210 0.92304 1.00667 0.99569 1.20903 0.99496 1.00168 0.92938 1.20117 0.93815 0.93970 0.95393 1.21090 0.94743 1.05761 0.95962 0.93064 0.94300 0.95850 0.95026 0.88207 0.92625 0.77939 0.84869 0.89829 0.89836 0.87503 0.85862 0.85366 0.90698 0.93008 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.56 11.29 55.43 0.63 -23.93 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.70 -14.72 4.97 -55.87 -0.28 -15.00 16 14 C 0.54 10.90 6.27 -12.32 -0.08 10.82 16 15 O -0.54 -11.92 10.46 5.32 0.06 -11.87 16 16 C -0.11 -1.81 5.87 -105.00 -0.62 -2.42 16 17 C -0.06 -0.93 9.27 -38.95 -0.36 -1.30 16 18 C -0.10 -1.33 6.11 -39.09 -0.24 -1.57 16 19 S -0.12 -1.31 22.56 -107.50 -2.43 -3.73 16 20 C -0.14 -1.01 9.15 101.05 0.92 -0.09 16 21 C -0.11 -1.30 9.36 -39.29 -0.37 -1.66 16 22 C -0.12 -1.38 9.65 -39.68 -0.38 -1.76 16 23 C -0.03 -0.44 5.92 -104.19 -0.62 -1.06 16 24 C -0.12 -1.72 8.72 36.01 0.31 -1.40 16 25 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 26 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.67 5.95 -51.94 -0.31 2.36 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 7.29 6.61 -40.82 -0.27 7.02 16 32 H 0.13 1.92 6.45 -52.49 -0.34 1.58 16 33 H 0.08 0.52 7.74 -51.92 -0.40 0.12 16 34 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 35 H 0.11 0.58 8.14 -51.92 -0.42 0.15 16 36 H 0.12 1.05 5.86 -52.49 -0.31 0.75 16 37 H 0.13 1.18 8.05 -52.48 -0.42 0.76 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 40 H 0.10 1.73 5.84 -51.93 -0.30 1.42 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -29.26 332.65 -9.33 -38.58 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.50 Total: 7.80 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.80 Total: -12.47 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.35 Total: -38.93 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.06 Total: -11.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.43 Total: -3.73 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.26 -9.33 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183826005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.127 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds