Wall clock time and date at job start Tue Mar 31 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.08996 * 115.55170 * 34.41260 * 16 14 13 18 18 C 1.53002 * 117.49439 * 248.74595 * 16 14 13 19 19 C 1.52999 * 117.49543 * 180.09119 * 16 14 13 20 20 H 1.09008 * 117.49292 * 214.97545 * 19 16 14 21 21 C 1.50697 * 117.50077 * 359.96957 * 19 16 14 22 22 S 1.75884 * 125.20180 * 59.70065 * 21 19 16 23 23 C 1.75884 * 90.97080 * 179.97438 * 22 21 19 24 24 C 1.33392 * 109.59128 * 0.31458 * 23 22 21 25 25 C 1.33386 * 125.20239 * 240.00053 * 21 19 16 26 26 C 1.50693 * 122.54507 * 359.96226 * 25 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08996 * 117.50144 * 0.02562 * 18 16 14 35 35 H 1.09002 * 117.49511 * 145.02002 * 18 16 14 36 36 H 1.08003 * 125.20450 * 180.10289 * 23 22 21 37 37 H 1.07996 * 122.53613 * 179.73183 * 24 23 22 38 38 H 1.09001 * 109.47201 * 89.99232 * 26 25 21 39 39 H 1.08996 * 109.47621 * 209.99855 * 26 25 21 40 40 H 1.09007 * 109.46816 * 330.00045 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.4279 2.8823 -3.5643 18 6 -0.1193 4.8598 -2.6374 19 6 -1.3578 3.9643 -2.7220 20 1 -1.8834 3.9213 -3.6760 21 6 -2.2273 3.8603 -1.4956 22 16 -1.8232 4.5024 0.0913 23 6 -3.3436 3.9124 0.7502 24 6 -4.0343 3.2905 -0.2066 25 6 -3.4186 3.2623 -1.4460 26 6 -4.0463 2.6050 -2.6481 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 0.0673 5.3740 -1.6946 35 1 0.1695 5.4054 -3.5357 36 1 -3.6667 4.0322 1.7737 37 1 -5.0008 2.8429 -0.0277 38 1 -3.7419 1.5593 -2.6908 39 1 -5.1318 2.6645 -2.5693 40 1 -3.7192 3.1160 -3.5537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183832886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:03 Heat of formation + Delta-G solvation = 20.362426 kcal Electronic energy + Delta-G solvation = -21865.128460 eV Core-core repulsion = 18772.463778 eV Total energy + Delta-G solvation = -3092.664682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63089 -37.87174 -36.23063 -34.68123 -32.31315 -30.89245 -30.46225 -27.53522 -26.91431 -24.11955 -23.10984 -22.60624 -21.33475 -19.92201 -19.26784 -18.53383 -17.08914 -16.27515 -15.90963 -15.22315 -14.88669 -14.66063 -14.24234 -13.99005 -13.61966 -13.23137 -12.81539 -12.63686 -12.53481 -12.08748 -12.02785 -11.80177 -11.60312 -11.44696 -11.31782 -11.20546 -10.96857 -10.80717 -10.60045 -10.29011 -10.24884 -10.14297 -10.01212 -9.58103 -9.03488 -8.99263 -8.47052 -7.93322 -7.81000 -7.17161 -6.10111 -4.19420 1.44867 2.23662 2.58059 3.04263 3.25927 3.31409 3.32095 3.34481 4.04113 4.18772 4.38226 4.73250 4.93532 5.09037 5.21015 5.27525 5.34569 5.56771 5.60452 5.66809 5.78504 5.81669 5.87522 6.02997 6.05621 6.14677 6.44415 6.52003 6.52358 6.72630 6.84701 6.98184 7.10026 7.25650 7.42799 7.53914 7.65555 7.78496 7.94632 8.22104 8.74884 8.82238 9.23777 9.48663 10.94977 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.004620 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.530866 B = 6059.731671 C = 6300.668072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.274 3.726 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.705 5.705 14 C 0.517 3.483 15 O -0.522 6.522 16 C -0.176 4.176 17 H 0.121 0.879 18 C -0.153 4.153 19 C -0.055 4.055 20 H 0.122 0.878 21 C -0.134 4.134 22 S 0.192 5.808 23 C -0.239 4.239 24 C -0.138 4.138 25 C -0.121 4.121 26 C -0.086 4.086 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.019 0.981 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.385 0.615 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 7.189 -9.590 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.301 3.699 15 O -0.401 6.401 16 C -0.198 4.198 17 H 0.139 0.861 18 C -0.191 4.191 19 C -0.075 4.075 20 H 0.140 0.860 21 C -0.252 4.252 22 S 0.462 5.538 23 C -0.376 4.376 24 C -0.170 4.170 25 C -0.133 4.133 26 C -0.145 4.145 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.115 0.885 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.170 0.830 37 H 0.143 0.857 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.003 7.870 -8.027 15.048 hybrid contribution 0.236 -1.105 -0.773 1.369 sum -9.767 6.765 -8.800 14.785 Atomic orbital electron populations 1.21812 0.98196 0.97792 1.01344 1.21919 0.92674 0.99884 1.02028 1.18724 0.93937 0.89071 0.81071 0.93337 1.21212 0.90881 1.38952 1.06193 0.92272 1.24873 0.98457 0.94853 0.95422 1.69889 1.35142 1.37631 1.09316 0.86545 0.85066 0.78276 0.77425 1.20222 1.21157 1.20210 1.46478 1.14575 1.55743 1.18415 1.19521 0.82958 0.79778 0.87669 1.90872 1.50564 1.58379 1.40266 1.22562 1.00758 0.96669 0.99822 0.86094 1.23113 1.00624 0.91398 1.03994 1.20364 0.87506 1.03620 0.96005 0.86004 1.23240 0.97772 1.06812 0.97387 1.83853 1.15934 1.52123 1.01882 1.25572 0.99393 1.09416 1.03219 1.19717 1.01382 1.03670 0.92241 1.18474 0.95474 1.03145 0.96228 1.20398 0.99491 0.99892 0.94697 0.94063 0.93246 0.96237 0.88489 0.95283 0.92572 0.78276 0.88286 0.87472 0.82974 0.85663 0.91852 0.92377 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.80 2.24 -69.09 -0.15 6.65 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.70 -14.34 5.02 -54.94 -0.28 -14.62 16 14 C 0.52 9.80 6.15 -10.98 -0.07 9.73 16 15 O -0.52 -11.14 8.45 5.56 0.05 -11.10 16 16 C -0.18 -2.50 6.19 -91.77 -0.57 -3.07 16 17 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.15 -1.88 9.75 -26.69 -0.26 -2.14 16 19 C -0.05 -0.72 5.75 -91.74 -0.53 -1.25 16 20 H 0.12 1.30 6.93 -51.92 -0.36 0.94 16 21 C -0.13 -2.09 4.61 -36.01 -0.17 -2.25 16 22 S 0.19 3.18 18.89 -107.50 -2.03 1.15 16 23 C -0.24 -3.70 11.23 29.04 0.33 -3.37 16 24 C -0.14 -2.07 9.98 -41.21 -0.41 -2.48 16 25 C -0.12 -1.81 5.80 -106.25 -0.62 -2.43 16 26 C -0.09 -1.02 9.87 36.00 0.36 -0.66 16 27 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 33 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 34 H 0.10 1.36 7.28 -51.93 -0.38 0.98 16 35 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.15 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.06 0.61 6.75 -51.92 -0.35 0.26 16 LS Contribution 331.59 15.07 5.00 5.00 Total: -1.00 -29.67 331.59 -9.73 -39.40 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.76 Total: 8.57 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -2.31 Total: -19.86 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.35 Total: -38.75 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.05 Total: -11.10 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.03 Total: 1.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.67 -9.73 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183832886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.767 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds