Wall clock time and date at job start Tue Mar 31 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.08996 * 115.55170 * 34.41260 * 16 14 13 18 18 C 1.53002 * 117.49439 * 248.74595 * 16 14 13 19 19 C 1.52999 * 117.49543 * 180.09119 * 16 14 13 20 20 H 1.09008 * 117.49292 * 214.97545 * 19 16 14 21 21 C 1.50697 * 117.50077 * 359.96957 * 19 16 14 22 22 S 1.75884 * 125.20180 * 59.70065 * 21 19 16 23 23 C 1.75884 * 90.97080 * 179.97438 * 22 21 19 24 24 C 1.33392 * 109.59128 * 0.31458 * 23 22 21 25 25 C 1.33386 * 125.20239 * 240.00053 * 21 19 16 26 26 C 1.50693 * 122.54507 * 359.96226 * 25 21 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08996 * 117.50144 * 0.02562 * 18 16 14 35 35 H 1.09002 * 117.49511 * 145.02002 * 18 16 14 36 36 H 1.08003 * 125.20450 * 180.10289 * 23 22 21 37 37 H 1.07996 * 122.53613 * 179.73183 * 24 23 22 38 38 H 1.09001 * 109.47201 * 89.99232 * 26 25 21 39 39 H 1.08996 * 109.47621 * 209.99855 * 26 25 21 40 40 H 1.09007 * 109.46816 * 330.00045 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 1 0.4279 2.8823 -3.5643 18 6 -0.1193 4.8598 -2.6374 19 6 -1.3578 3.9643 -2.7220 20 1 -1.8834 3.9213 -3.6760 21 6 -2.2273 3.8603 -1.4956 22 16 -1.8232 4.5024 0.0913 23 6 -3.3436 3.9124 0.7502 24 6 -4.0343 3.2905 -0.2066 25 6 -3.4186 3.2623 -1.4460 26 6 -4.0463 2.6050 -2.6481 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 0.0673 5.3740 -1.6946 35 1 0.1695 5.4054 -3.5357 36 1 -3.6667 4.0322 1.7737 37 1 -5.0008 2.8429 -0.0277 38 1 -3.7419 1.5593 -2.6908 39 1 -5.1318 2.6645 -2.5693 40 1 -3.7192 3.1160 -3.5537 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183832886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:02 Heat of formation + Delta-G solvation = 3.865700 kcal Electronic energy + Delta-G solvation = -21865.843812 eV Core-core repulsion = 18772.463778 eV Total energy + Delta-G solvation = -3093.380033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99771 -39.12574 -37.57153 -36.33442 -34.21191 -32.72176 -31.57336 -29.14129 -28.29983 -25.69356 -24.37588 -24.14333 -22.44288 -21.62636 -20.90888 -19.76028 -18.61515 -17.79479 -17.31822 -16.92410 -16.35438 -15.98047 -15.86651 -15.37031 -14.80704 -14.58687 -14.55001 -13.95417 -13.80014 -13.53919 -13.41939 -13.16740 -13.06838 -12.92866 -12.90214 -12.65929 -12.61320 -12.29094 -12.15816 -12.03753 -11.65022 -11.57758 -11.30560 -11.21142 -11.02656 -10.57279 -10.39630 -9.56528 -9.03121 -8.52277 -8.14349 -6.31589 0.27010 1.05419 1.39987 1.44004 1.45529 1.53271 1.84526 2.04633 2.37598 2.72802 3.05536 3.15194 3.66403 3.90906 3.95325 4.22138 4.24758 4.43369 4.50932 4.59643 4.67181 4.70170 4.72441 4.79046 4.86386 4.94106 4.97287 5.09477 5.11079 5.24272 5.29321 5.36876 5.47529 5.58877 5.71261 5.72283 5.84284 5.88440 6.00611 6.21311 6.78124 7.15441 7.36656 7.76815 8.90252 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.004620 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.530866 B = 6059.731671 C = 6300.668072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C 0.286 3.714 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.548 6.548 16 C -0.182 4.182 17 H 0.154 0.846 18 C -0.138 4.138 19 C -0.054 4.054 20 H 0.158 0.842 21 C -0.139 4.139 22 S 0.128 5.872 23 C -0.251 4.251 24 C -0.144 4.144 25 C -0.133 4.133 26 C -0.083 4.083 27 H 0.047 0.953 28 H 0.022 0.978 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.398 0.602 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.165 0.835 37 H 0.147 0.853 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.846 7.395 -12.553 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.157 4.157 3 C 0.182 3.818 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.356 5.356 14 C 0.293 3.707 15 O -0.428 6.428 16 C -0.203 4.203 17 H 0.172 0.828 18 C -0.176 4.176 19 C -0.074 4.074 20 H 0.176 0.824 21 C -0.257 4.257 22 S 0.398 5.602 23 C -0.387 4.387 24 C -0.175 4.175 25 C -0.145 4.145 26 C -0.142 4.142 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.095 0.905 35 H 0.166 0.834 36 H 0.182 0.818 37 H 0.165 0.835 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.123 8.095 -11.026 17.017 hybrid contribution 0.170 -1.144 0.199 1.174 sum -9.953 6.951 -10.827 16.267 Atomic orbital electron populations 1.21603 0.96874 0.98542 1.00248 1.21755 0.93701 0.99469 1.00806 1.18213 0.93151 0.88836 0.81608 0.98570 1.21582 0.91780 1.38687 1.06506 0.91316 1.25744 1.03101 0.94466 0.95084 1.70052 1.37029 1.38507 1.09837 0.85478 0.79424 0.78408 0.77507 1.19697 1.21287 1.18961 1.46254 1.15803 1.56292 1.17264 1.20405 0.81931 0.79145 0.89261 1.90893 1.51137 1.58896 1.41873 1.22510 1.02059 0.97822 0.97956 0.82795 1.23242 0.99479 0.90141 1.04757 1.20645 0.87137 1.03319 0.96273 0.82433 1.23570 0.98380 1.06722 0.96993 1.84035 1.17885 1.53798 1.04531 1.25786 0.98792 1.09948 1.04190 1.20120 1.02151 1.02967 0.92311 1.18947 0.95445 1.02746 0.97330 1.20458 1.00416 0.99358 0.93941 0.93443 0.95903 0.94415 0.91458 0.94493 0.92745 0.76771 0.90480 0.83424 0.81777 0.83533 0.92263 0.90695 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.52 71.98 0.61 -4.69 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.29 14.61 2.24 44.24 0.10 14.70 16 4 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 5 C -0.55 -29.08 8.73 25.60 0.22 -28.85 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.87 5.29 84.65 0.45 1.31 16 8 N -0.92 -53.01 11.29 21.45 0.24 -52.77 16 9 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 13 N -0.71 -28.70 5.02 -446.11 -2.24 -30.94 16 14 C 0.51 18.99 6.15 87.66 0.54 19.53 16 15 O -0.55 -23.94 8.45 -3.03 -0.03 -23.97 16 16 C -0.18 -4.67 6.19 -11.54 -0.07 -4.74 16 17 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 18 C -0.14 -3.00 9.75 30.62 0.30 -2.70 16 19 C -0.05 -1.25 5.75 -11.52 -0.07 -1.32 16 20 H 0.16 2.55 6.93 -2.38 -0.02 2.54 16 21 C -0.14 -4.16 4.61 24.59 0.11 -4.05 16 22 S 0.13 4.38 18.89 -56.49 -1.07 3.31 16 23 C -0.25 -7.90 11.23 66.72 0.75 -7.16 16 24 C -0.14 -4.18 9.98 21.22 0.21 -3.97 16 25 C -0.13 -3.76 5.80 -20.92 -0.12 -3.88 16 26 C -0.08 -1.70 9.87 71.23 0.70 -1.00 16 27 H 0.05 2.09 5.65 -2.39 -0.01 2.08 16 28 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 29 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.07 3.79 5.95 -2.39 -0.01 3.77 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.40 13.88 8.54 -92.71 -0.79 13.09 16 34 H 0.08 2.06 7.28 -2.39 -0.02 2.04 16 35 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.28 8.13 -2.39 -0.02 1.26 16 40 H 0.08 1.30 6.75 -2.38 -0.02 1.28 16 Total: -1.00 -67.17 331.59 3.10 -64.07 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.26 Total: 28.44 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.91 Total: -32.54 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.00 Total: -83.71 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.03 Total: -23.97 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.07 Total: 3.31 kcal Total: -67.17 3.10 -64.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183832886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.932 kcal (2) G-P(sol) polarization free energy of solvation -67.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds