Wall clock time and date at job start Tue Mar 31 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47545 * 2 1 4 4 H 1.09000 * 109.47588 * 54.31451 * 3 2 1 5 5 C 1.50701 * 109.47380 * 174.32093 * 3 2 1 6 6 H 1.07997 * 119.99976 * 25.58411 * 5 3 2 7 7 C 1.37881 * 120.00039 * 205.58198 * 5 3 2 8 8 N 1.31519 * 119.99704 * 352.95800 * 7 5 3 9 9 Si 1.86798 * 119.99982 * 172.95797 * 7 5 3 10 10 H 1.48503 * 109.46891 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47006 * 300.00209 * 9 7 5 12 12 H 1.48494 * 109.47126 * 60.00044 * 9 7 5 13 13 N 1.46511 * 109.46923 * 294.31848 * 3 2 1 14 14 C 1.34775 * 119.99463 * 85.00006 * 13 3 2 15 15 O 1.21274 * 120.00675 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99735 * 180.02562 * 14 13 3 17 17 H 1.09003 * 115.54648 * 325.66795 * 16 14 13 18 18 C 1.52998 * 117.49953 * 111.37224 * 16 14 13 19 19 C 1.52992 * 117.50172 * 179.97438 * 16 14 13 20 20 H 1.09008 * 117.50192 * 0.02562 * 19 16 14 21 21 C 1.50700 * 117.50299 * 145.01752 * 19 16 14 22 22 S 1.75892 * 125.20036 * 59.69358 * 21 19 16 23 23 C 1.75884 * 90.96918 * 179.97438 * 22 21 19 24 24 C 1.33386 * 109.59312 * 0.31455 * 23 22 21 25 25 C 1.33389 * 125.20898 * 240.00193 * 21 19 16 26 26 C 1.50698 * 122.53415 * 359.97438 * 25 21 19 27 27 H 1.08999 * 109.47317 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47280 * 300.00358 * 1 2 3 29 29 H 1.08998 * 109.47165 * 60.00158 * 1 2 3 30 30 H 1.09001 * 109.47020 * 239.99226 * 2 1 3 31 31 H 1.09004 * 109.46725 * 119.99927 * 2 1 3 32 32 H 0.96999 * 120.00193 * 354.58235 * 8 7 5 33 33 H 0.96993 * 120.00187 * 265.00020 * 13 3 2 34 34 H 1.09002 * 117.50045 * 214.97979 * 18 16 14 35 35 H 1.08993 * 117.50161 * 0.02562 * 18 16 14 36 36 H 1.08005 * 125.20135 * 180.02562 * 23 22 21 37 37 H 1.08001 * 122.53621 * 179.77952 * 24 23 22 38 38 H 1.09005 * 109.47139 * 90.00182 * 26 25 21 39 39 H 1.09001 * 109.46805 * 209.99790 * 26 25 21 40 40 H 1.08999 * 109.47261 * 330.00184 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5960 1.9849 0.8347 5 6 3.5405 1.4447 0.1406 6 1 4.1144 0.5890 -0.1831 7 6 4.1805 2.5391 0.6825 8 7 3.5008 3.6333 0.9483 9 14 6.0127 2.4678 1.0390 10 1 6.4556 3.7629 1.6151 11 1 6.2863 1.3762 2.0078 12 1 6.7526 2.2075 -0.2219 13 7 1.6665 2.0924 -1.2588 14 6 0.4506 2.6589 -1.3897 15 8 -0.3345 2.6301 -0.4658 16 6 0.0662 3.3270 -2.6846 17 1 0.8764 3.8298 -3.2128 18 6 -1.0206 2.6586 -3.5290 19 6 -1.3281 3.9509 -2.7710 20 1 -1.9673 3.8786 -1.8909 21 6 -1.4765 5.2138 -3.5798 22 16 -1.1085 5.3698 -5.2927 23 6 -1.5745 7.0656 -5.2689 24 6 -1.9552 7.4076 -4.0371 25 6 -1.9015 6.3856 -3.1051 26 6 -2.2928 6.5821 -1.6631 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 2.5678 3.6991 0.6914 33 1 2.2943 2.1151 -1.9978 34 1 -0.9255 2.7214 -4.6131 35 1 -1.4578 1.7358 -3.1478 36 1 -1.5512 7.7298 -6.1203 37 1 -2.2813 8.4062 -3.7861 38 1 -1.4190 6.8885 -1.0880 39 1 -3.0602 7.3534 -1.5968 40 1 -2.6822 5.6466 -1.2616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183832914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:11 Heat of formation + Delta-G solvation = -3.218576 kcal Electronic energy + Delta-G solvation = -21217.724194 eV Core-core repulsion = 18124.036963 eV Total energy + Delta-G solvation = -3093.687231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.57085 -38.34989 -36.40179 -34.84036 -32.21232 -31.40786 -30.81070 -27.74648 -26.73330 -24.01665 -23.38020 -22.82011 -21.52682 -20.14528 -19.25768 -18.61419 -17.39092 -17.17143 -16.22962 -15.24273 -15.12461 -14.56688 -14.03943 -13.86298 -13.80065 -13.74483 -13.12957 -12.94875 -12.56490 -12.32983 -12.25237 -12.14378 -12.00076 -11.83091 -11.49039 -11.03580 -10.88977 -10.82711 -10.77372 -10.56720 -10.34230 -10.33069 -10.16386 -9.80137 -9.12638 -8.73222 -8.63884 -8.45324 -8.29204 -7.73720 -6.54052 -4.35547 0.93493 1.58612 1.96312 2.62920 3.25214 3.34962 3.37248 3.56479 4.05678 4.15954 4.40638 4.70430 4.85328 4.92962 5.06068 5.23446 5.35903 5.38254 5.46932 5.55244 5.62908 5.74454 5.82203 5.95601 6.01074 6.02939 6.05262 6.08466 6.23519 6.26196 6.47038 6.53184 6.67677 6.83361 6.95984 7.07776 7.31468 7.68999 7.91310 8.26830 8.60806 8.81037 9.23667 9.44777 10.82878 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.004138 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.494503 B = 6765.180781 C = 7414.155272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.243 3.757 4 H 0.053 0.947 5 C -0.610 4.610 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.888 5.888 9 Si 1.068 2.932 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.698 5.698 14 C 0.526 3.474 15 O -0.558 6.558 16 C -0.169 4.169 17 H 0.118 0.882 18 C -0.149 4.149 19 C -0.058 4.058 20 H 0.135 0.865 21 C -0.139 4.139 22 S 0.090 5.910 23 C -0.221 4.221 24 C -0.125 4.125 25 C -0.105 4.105 26 C -0.095 4.095 27 H 0.028 0.972 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.278 0.722 33 H 0.387 0.613 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.162 0.838 37 H 0.138 0.862 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 3.911 -11.968 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.144 3.856 4 H 0.071 0.929 5 C -0.649 4.649 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.521 5.521 9 Si 0.895 3.105 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.346 5.346 14 C 0.311 3.689 15 O -0.439 6.439 16 C -0.191 4.191 17 H 0.136 0.864 18 C -0.187 4.187 19 C -0.078 4.078 20 H 0.153 0.847 21 C -0.256 4.256 22 S 0.355 5.645 23 C -0.356 4.356 24 C -0.156 4.156 25 C -0.116 4.116 26 C -0.154 4.154 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.220 0.780 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.180 0.820 37 H 0.156 0.844 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.311 3.761 -11.769 14.891 hybrid contribution -1.338 0.275 -0.220 1.384 sum -9.649 4.036 -11.990 15.911 Atomic orbital electron populations 1.21851 0.97100 0.98570 1.02289 1.21820 0.94177 0.99174 1.00453 1.18954 0.94895 0.88573 0.83216 0.92897 1.22129 0.91129 1.04872 1.46752 0.92603 1.26003 1.06619 0.92196 0.92960 1.70731 1.12070 1.27336 1.41989 0.83568 0.74009 0.76223 0.76677 1.20693 1.21138 1.21256 1.47603 1.13503 1.55055 1.18396 1.19529 0.83260 0.78924 0.87170 1.90615 1.51427 1.60833 1.40996 1.22626 0.93266 1.04124 0.99085 0.86429 1.23040 1.01049 0.96701 0.97881 1.20412 0.98749 0.88566 1.00089 0.84720 1.23595 1.08010 0.97946 0.96065 1.84115 1.66431 1.07020 1.06937 1.25517 1.09573 0.98849 1.01681 1.20037 1.03141 1.00247 0.92158 1.18828 1.02947 0.92004 0.97871 1.20532 1.01484 1.02556 0.90805 0.95320 0.92947 0.93094 0.93695 0.92356 0.91048 0.78023 0.88311 0.87564 0.82046 0.84396 0.90905 0.91829 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.53 37.16 0.32 -2.50 16 2 C -0.12 -2.53 5.58 -26.74 -0.15 -2.68 16 3 C 0.24 5.96 1.72 -69.08 -0.12 5.84 16 4 H 0.05 1.50 6.59 -51.93 -0.34 1.16 16 5 C -0.61 -16.06 8.49 -34.44 -0.29 -16.35 16 6 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 8 N -0.89 -26.00 13.56 55.43 0.75 -25.25 16 9 Si 1.07 23.82 29.91 -169.99 -5.08 18.74 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 13 N -0.70 -15.14 4.96 -54.93 -0.27 -15.41 16 14 C 0.53 10.85 6.21 -10.99 -0.07 10.79 16 15 O -0.56 -13.01 13.40 5.56 0.07 -12.93 16 16 C -0.17 -2.77 5.89 -91.78 -0.54 -3.31 16 17 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 18 C -0.15 -2.02 9.75 -26.76 -0.26 -2.28 16 19 C -0.06 -0.86 5.26 -91.80 -0.48 -1.35 16 20 H 0.14 2.16 6.46 -51.92 -0.34 1.83 16 21 C -0.14 -1.93 6.13 -36.00 -0.22 -2.15 16 22 S 0.09 1.06 22.17 -107.50 -2.38 -1.32 16 23 C -0.22 -2.38 11.23 29.04 0.33 -2.05 16 24 C -0.13 -1.43 9.98 -41.21 -0.41 -1.84 16 25 C -0.10 -1.39 5.80 -106.25 -0.62 -2.00 16 26 C -0.09 -1.16 9.87 36.00 0.36 -0.81 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 29 H 0.05 1.03 5.63 -51.93 -0.29 0.74 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.28 8.34 6.93 -40.82 -0.28 8.05 16 33 H 0.39 7.85 8.59 -40.82 -0.35 7.50 16 34 H 0.10 1.16 7.27 -51.93 -0.38 0.78 16 35 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 40 H 0.07 0.89 6.75 -51.93 -0.35 0.54 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -29.88 342.23 -9.77 -39.65 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.75 Total: 11.30 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -2.26 Total: -19.94 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.48 Total: -40.66 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -5.08 Total: 18.74 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.38 Total: -1.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.88 -9.77 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183832914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.434 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds