Wall clock time and date at job start Tue Mar 31 2020 06:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.46874 * 29.99044 * 16 14 13 18 18 S 1.81402 * 109.47018 * 269.99698 * 16 14 13 19 19 C 1.81406 * 103.00132 * 64.99480 * 18 16 14 20 20 C 1.50695 * 109.47555 * 149.99645 * 16 14 13 21 21 C 1.38235 * 119.99964 * 59.72188 * 20 16 14 22 22 C 1.38235 * 119.99895 * 179.78918 * 21 20 16 23 23 C 1.38237 * 120.00081 * 0.44523 * 22 21 20 24 24 C 1.38236 * 119.99949 * 359.80820 * 23 22 21 25 25 C 1.38231 * 119.99866 * 359.97438 * 24 23 22 26 26 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 33 33 H 1.08996 * 109.47070 * 300.00146 * 19 18 16 34 34 H 1.09001 * 109.46421 * 60.00073 * 19 18 16 35 35 H 1.08996 * 109.47272 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.00254 * 0.02562 * 21 20 16 37 37 H 1.08002 * 120.00119 * 180.28150 * 22 21 20 38 38 H 1.08000 * 119.99880 * 179.83541 * 23 22 21 39 39 H 1.07995 * 120.00108 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.00202 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.5419 2.8528 -3.4900 18 16 0.5110 5.0875 -2.5946 19 6 2.3225 5.0170 -2.5274 20 6 -1.4553 3.2279 -2.8382 21 6 -2.3092 3.7683 -1.8949 22 6 -3.6776 3.6713 -2.0653 23 6 -4.1920 3.0259 -3.1742 24 6 -3.3381 2.4809 -4.1148 25 6 -1.9698 2.5818 -3.9467 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8288 -0.0530 2.9544 32 1 2.2721 2.1230 -1.9977 33 1 2.6319 4.4681 -1.6380 34 1 2.6995 4.5110 -3.4162 35 1 2.7243 6.0294 -2.4882 36 1 -1.9073 4.2696 -1.0268 37 1 -4.3448 4.0975 -1.3307 38 1 -5.2611 2.9479 -3.3059 39 1 -3.7400 1.9763 -4.9809 40 1 -1.3026 2.1564 -4.6817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183905597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:27 Heat of formation + Delta-G solvation = -19.625424 kcal Electronic energy + Delta-G solvation = -21655.679628 eV Core-core repulsion = 18561.280943 eV Total energy + Delta-G solvation = -3094.398685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75359 -38.44674 -35.17231 -32.88343 -32.36625 -30.97648 -30.75746 -28.85197 -27.76192 -26.52314 -23.13605 -22.50079 -21.74358 -20.28504 -19.44812 -17.41547 -17.00736 -16.16367 -15.89346 -15.51515 -15.02947 -14.69372 -14.45983 -14.24506 -13.54267 -13.39921 -13.27737 -13.22944 -12.81478 -12.65927 -12.64731 -12.09719 -11.86449 -11.54412 -11.30805 -11.03785 -11.00921 -10.96923 -10.87604 -10.35369 -10.26085 -10.05185 -9.66806 -9.31128 -9.09394 -8.72523 -8.58815 -8.55436 -7.90900 -7.56826 -6.17723 -4.27726 1.10257 1.56196 1.85837 2.46673 3.19388 3.27651 3.29385 3.55190 3.76692 4.14061 4.33122 4.58000 4.87094 5.08883 5.13863 5.18408 5.23050 5.25643 5.32976 5.41200 5.60495 5.75164 5.91789 6.03748 6.19497 6.36465 6.43086 6.52558 6.62741 6.65063 6.73209 7.00470 7.10201 7.15459 7.30875 7.37269 7.55909 7.65587 7.83679 8.12328 8.54737 8.70594 9.01049 9.39754 10.87498 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.004761 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.264925 B = 5879.621245 C = 6727.581817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.706 5.706 14 C 0.510 3.490 15 O -0.523 6.523 16 C -0.043 4.043 17 H 0.104 0.896 18 S -0.216 6.216 19 C -0.137 4.137 20 C -0.059 4.059 21 C -0.063 4.063 22 C -0.127 4.127 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.103 4.103 26 H 0.022 0.978 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 5.546 -12.096 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.354 5.354 14 C 0.291 3.709 15 O -0.400 6.400 16 C -0.175 4.175 17 H 0.123 0.877 18 S 0.013 5.987 19 C -0.306 4.306 20 C -0.061 4.061 21 C -0.083 4.083 22 C -0.145 4.145 23 C -0.134 4.134 24 C -0.148 4.148 25 C -0.122 4.122 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.022 6.347 -11.210 15.727 hybrid contribution 2.214 -1.192 -0.272 2.529 sum -6.808 5.154 -11.483 14.310 Atomic orbital electron populations 1.21833 0.98255 0.98089 1.01257 1.21934 0.92660 0.99743 1.02248 1.18811 0.94229 0.89176 0.80676 0.93167 1.21233 0.90603 1.39368 1.06172 0.92145 1.24875 0.98568 0.94743 0.95358 1.69905 1.35067 1.37533 1.09228 0.86420 0.84868 0.77830 0.78142 1.19772 1.20840 1.20844 1.46556 1.14179 1.55996 1.18701 1.19868 0.83248 0.79435 0.88379 1.90676 1.50970 1.58878 1.39492 1.22282 0.97550 0.96561 1.01069 0.87743 1.86876 1.06993 1.07314 1.97505 1.23612 0.93982 1.06847 1.06125 1.18804 0.91110 1.00196 0.95992 1.21178 0.92766 0.96669 0.97660 1.21152 0.95244 1.00200 0.97948 1.21145 0.99486 0.98121 0.94691 1.20987 0.93126 1.01055 0.99630 1.20953 0.95577 0.98857 0.96852 0.95877 0.93132 0.94277 0.95100 0.88277 0.92558 0.78297 0.88872 0.90367 0.87927 0.84768 0.86051 0.86336 0.86154 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.61 2.24 -69.09 -0.15 6.45 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.61 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -24.17 11.30 55.43 0.63 -23.55 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.71 -13.94 4.38 -54.94 -0.24 -14.18 16 14 C 0.51 9.76 5.11 -10.99 -0.06 9.70 16 15 O -0.52 -11.71 11.68 5.55 0.06 -11.64 16 16 C -0.04 -0.66 2.81 -29.04 -0.08 -0.75 16 17 H 0.10 1.37 7.88 -51.92 -0.41 0.96 16 18 S -0.22 -3.15 21.40 -107.50 -2.30 -5.45 16 19 C -0.14 -1.73 10.54 101.05 1.07 -0.66 16 20 C -0.06 -0.91 4.69 -104.63 -0.49 -1.40 16 21 C -0.06 -1.00 8.01 -39.58 -0.32 -1.31 16 22 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.10 -1.34 9.67 -39.58 -0.38 -1.73 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.63 5.96 -51.93 -0.31 2.32 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 32 H 0.38 6.64 8.54 -40.82 -0.35 6.30 16 33 H 0.09 1.38 7.36 -51.93 -0.38 1.00 16 34 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.13 2.32 7.23 -52.49 -0.38 1.94 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.31 7.95 -52.49 -0.42 0.90 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -29.11 339.59 -9.43 -38.54 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.84 Total: 9.68 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.83 Total: -13.62 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.39 Total: -37.73 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.06 Total: -11.64 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.30 Total: -5.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.11 -9.43 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183905597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.912 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds