Wall clock time and date at job start Tue Mar 31 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21288 * 120.00081 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00464 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.46874 * 29.99044 * 16 14 13 18 18 S 1.81402 * 109.47018 * 269.99698 * 16 14 13 19 19 C 1.81406 * 103.00132 * 64.99480 * 18 16 14 20 20 C 1.50695 * 109.47555 * 149.99645 * 16 14 13 21 21 C 1.38235 * 119.99964 * 59.72188 * 20 16 14 22 22 C 1.38235 * 119.99895 * 179.78918 * 21 20 16 23 23 C 1.38237 * 120.00081 * 0.44523 * 22 21 20 24 24 C 1.38236 * 119.99949 * 359.80820 * 23 22 21 25 25 C 1.38231 * 119.99866 * 359.97438 * 24 23 22 26 26 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 30 30 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 33 33 H 1.08996 * 109.47070 * 300.00146 * 19 18 16 34 34 H 1.09001 * 109.46421 * 60.00073 * 19 18 16 35 35 H 1.08996 * 109.47272 * 179.97438 * 19 18 16 36 36 H 1.08001 * 120.00254 * 0.02562 * 21 20 16 37 37 H 1.08002 * 120.00119 * 180.28150 * 22 21 20 38 38 H 1.08000 * 119.99880 * 179.83541 * 23 22 21 39 39 H 1.07995 * 120.00108 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.00202 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3395 2.6321 -0.4344 16 6 0.0365 3.3377 -2.6549 17 1 0.5419 2.8528 -3.4900 18 16 0.5110 5.0875 -2.5946 19 6 2.3225 5.0170 -2.5274 20 6 -1.4553 3.2279 -2.8382 21 6 -2.3092 3.7683 -1.8949 22 6 -3.6776 3.6713 -2.0653 23 6 -4.1920 3.0259 -3.1742 24 6 -3.3381 2.4809 -4.1148 25 6 -1.9698 2.5818 -3.9467 26 1 -0.3634 -1.0275 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8288 -0.0530 2.9544 32 1 2.2721 2.1230 -1.9977 33 1 2.6319 4.4681 -1.6380 34 1 2.6995 4.5110 -3.4162 35 1 2.7243 6.0294 -2.4882 36 1 -1.9073 4.2696 -1.0268 37 1 -4.3448 4.0975 -1.3307 38 1 -5.2611 2.9479 -3.3059 39 1 -3.7400 1.9763 -4.9809 40 1 -1.3026 2.1564 -4.6817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183905597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:26 Heat of formation + Delta-G solvation = -35.407905 kcal Electronic energy + Delta-G solvation = -21656.364007 eV Core-core repulsion = 18561.280943 eV Total energy + Delta-G solvation = -3095.083065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13567 -39.69608 -36.97887 -34.42776 -33.92686 -32.71279 -31.75020 -29.99339 -29.23533 -28.08163 -25.02814 -23.51696 -23.01252 -21.82947 -21.19683 -19.09843 -18.13897 -17.50938 -17.42386 -17.13434 -16.33429 -16.20671 -15.81877 -15.56705 -14.93710 -14.65157 -14.64717 -14.40592 -14.25965 -13.91771 -13.77257 -13.56954 -13.40973 -13.19005 -13.01364 -12.87409 -12.71991 -12.18504 -12.09534 -12.01408 -11.95903 -11.60870 -11.23865 -11.06179 -10.82123 -10.55171 -9.74740 -9.70208 -9.60311 -8.75041 -8.16941 -6.34369 0.01071 0.55553 0.75613 1.33889 1.43022 1.44897 1.55680 2.08026 2.30606 2.51199 3.03040 3.13091 3.43957 3.73173 4.00909 4.20684 4.20901 4.30701 4.31124 4.33738 4.47003 4.55103 4.65011 4.73576 4.75846 4.89626 5.03557 5.07030 5.19747 5.24060 5.41603 5.52917 5.56318 5.59256 5.65139 5.68388 5.76945 5.88931 6.12666 6.15111 6.73101 6.89766 7.31580 7.50193 8.88416 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.004761 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.264925 B = 5879.621245 C = 6727.581817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.283 3.717 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.701 5.701 14 C 0.508 3.492 15 O -0.560 6.560 16 C -0.031 4.031 17 H 0.132 0.868 18 S -0.234 6.234 19 C -0.131 4.131 20 C -0.082 4.082 21 C -0.090 4.090 22 C -0.139 4.139 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.108 4.108 26 H 0.043 0.957 27 H 0.024 0.976 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.400 0.600 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 5.292 -15.002 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.180 3.820 4 H 0.016 0.984 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.350 5.350 14 C 0.291 3.709 15 O -0.439 6.439 16 C -0.162 4.162 17 H 0.150 0.850 18 S -0.005 6.005 19 C -0.299 4.299 20 C -0.083 4.083 21 C -0.110 4.110 22 C -0.157 4.157 23 C -0.131 4.131 24 C -0.145 4.145 25 C -0.127 4.127 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.867 6.113 -14.161 17.791 hybrid contribution 2.079 -1.067 0.641 2.423 sum -6.788 5.046 -13.520 15.947 Atomic orbital electron populations 1.21656 0.97089 0.98993 1.00147 1.21783 0.93581 0.99262 1.01277 1.18343 0.93666 0.88979 0.81011 0.98438 1.21575 0.91253 1.38979 1.06495 0.90919 1.25734 1.03083 0.94406 0.95057 1.70058 1.36970 1.38474 1.09804 0.85365 0.79378 0.77778 0.78226 1.18262 1.21214 1.20590 1.46278 1.15021 1.55997 1.17725 1.20553 0.82276 0.78591 0.89494 1.90666 1.51961 1.59966 1.41338 1.22174 0.98400 0.96533 0.99047 0.85018 1.86999 1.09028 1.07048 1.97399 1.23664 0.92205 1.07986 1.06062 1.18929 0.90702 1.01570 0.97108 1.21091 0.94214 0.98171 0.97482 1.21384 0.94483 1.00654 0.99186 1.21541 1.01282 0.96668 0.93632 1.21441 0.92577 1.00090 1.00364 1.21284 0.96839 0.98149 0.96434 0.93799 0.95699 0.93866 0.94017 0.91054 0.92659 0.76552 0.91363 0.87825 0.86133 0.87807 0.84878 0.83215 0.82783 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.52 71.98 0.61 -4.89 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.68 16 3 C 0.28 14.14 2.24 44.25 0.10 14.23 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.54 -27.87 8.73 25.60 0.22 -27.65 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.92 5.30 84.66 0.45 1.37 16 8 N -0.91 -51.69 11.30 21.45 0.24 -51.45 16 9 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 10 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 13 N -0.70 -27.81 4.38 -446.12 -1.95 -29.76 16 14 C 0.51 19.73 5.11 87.66 0.45 20.18 16 15 O -0.56 -26.26 11.68 -3.05 -0.04 -26.30 16 16 C -0.03 -0.92 2.81 29.10 0.08 -0.83 16 17 H 0.13 3.14 7.88 -2.39 -0.02 3.12 16 18 S -0.23 -6.70 21.40 -56.49 -1.21 -7.91 16 19 C -0.13 -3.10 10.54 113.37 1.20 -1.91 16 20 C -0.08 -2.42 4.69 -19.87 -0.09 -2.51 16 21 C -0.09 -2.90 8.01 22.27 0.18 -2.72 16 22 C -0.14 -3.64 10.05 22.27 0.22 -3.42 16 23 C -0.11 -2.37 10.05 22.27 0.22 -2.14 16 24 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 25 C -0.11 -2.53 9.67 22.27 0.22 -2.32 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 28 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 3.91 5.96 -2.39 -0.01 3.89 16 31 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 32 H 0.40 13.38 8.54 -92.71 -0.79 12.59 16 33 H 0.07 1.99 7.36 -2.39 -0.02 1.97 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.10 3.88 7.23 -2.91 -0.02 3.85 16 37 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.14 2.61 7.95 -2.91 -0.02 2.58 16 Total: -1.00 -65.84 339.59 3.56 -62.27 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.24 Total: 30.51 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.25 Total: -20.61 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.71 Total: -81.20 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.04 Total: -26.30 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -1.21 Total: -7.91 kcal Total: -65.84 3.56 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183905597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.866 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds