Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46950 * 60.00390 * 9 7 5 11 11 H 1.48504 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47332 * 299.99972 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 H 1.08999 * 109.46845 * 334.71660 * 16 14 13 18 18 S 1.81393 * 109.47246 * 94.71969 * 16 14 13 19 19 C 1.81402 * 103.00075 * 184.99926 * 18 16 14 20 20 C 1.50696 * 109.47044 * 214.72259 * 16 14 13 21 21 C 1.38236 * 119.99909 * 299.72551 * 20 16 14 22 22 C 1.38240 * 120.00077 * 179.78581 * 21 20 16 23 23 C 1.38232 * 119.99616 * 0.44351 * 22 21 20 24 24 C 1.38234 * 120.00436 * 359.81247 * 23 22 21 25 25 C 1.38234 * 120.00053 * 119.99841 * 20 16 14 26 26 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 29 29 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 30 30 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 31 31 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 33 33 H 1.09004 * 109.46987 * 180.02562 * 19 18 16 34 34 H 1.09001 * 109.46685 * 300.00265 * 19 18 16 35 35 H 1.08993 * 109.46924 * 60.00088 * 19 18 16 36 36 H 1.08004 * 120.00285 * 359.97438 * 21 20 16 37 37 H 1.07999 * 120.00189 * 180.27279 * 22 21 20 38 38 H 1.08003 * 120.00080 * 179.83015 * 23 22 21 39 39 H 1.08001 * 120.00487 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.00205 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5975 0.1471 -0.2351 11 1 6.3978 0.2165 -2.6506 12 1 6.4995 2.2813 -1.3823 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 1 0.6092 2.9187 3.4787 18 16 0.3850 5.1200 2.5295 19 6 -0.0056 5.7280 4.1934 20 6 -1.4330 3.1343 2.8983 21 6 -2.3592 3.5970 1.9823 22 6 -3.7094 3.4011 2.2055 23 6 -4.1336 2.7506 3.3491 24 6 -3.2076 2.2926 4.2676 25 6 -1.8573 2.4846 4.0423 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0611 -2.9500 32 1 2.2721 2.1230 1.9977 33 1 0.1680 6.8032 4.2373 34 1 -1.0511 5.5195 4.4203 35 1 0.6313 5.2267 4.9221 36 1 -2.0280 4.1088 1.0908 37 1 -4.4328 3.7586 1.4877 38 1 -5.1885 2.6000 3.5248 39 1 -3.5390 1.7841 5.1609 40 1 -1.1338 2.1267 4.7598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183905660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = -18.488951 kcal Electronic energy + Delta-G solvation = -21519.223479 eV Core-core repulsion = 18424.874075 eV Total energy + Delta-G solvation = -3094.349404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75471 -38.44747 -35.13358 -32.92141 -32.32032 -30.89994 -30.79445 -28.89278 -27.90342 -26.49476 -23.09217 -22.52922 -21.75576 -20.28238 -19.39374 -17.44227 -16.96460 -16.17169 -15.87527 -15.50844 -14.98102 -14.74353 -14.46840 -14.19000 -13.71072 -13.50706 -13.40049 -13.15625 -12.84665 -12.71548 -12.61266 -12.19426 -11.84893 -11.43570 -11.24346 -11.19161 -11.02847 -10.96271 -10.81465 -10.34000 -10.18130 -10.11077 -9.62369 -9.14469 -9.05173 -8.77868 -8.63139 -8.49217 -7.86107 -7.61981 -6.11593 -4.21041 1.12053 1.50505 1.65312 2.52955 3.26706 3.31970 3.33242 3.56571 3.77040 4.14267 4.38266 4.56051 4.84067 5.04508 5.07229 5.09542 5.13941 5.19755 5.22727 5.45711 5.56171 5.62854 5.72126 5.99756 6.16465 6.39209 6.45910 6.48063 6.61888 6.65865 6.71160 7.03772 7.07040 7.18827 7.34822 7.41922 7.61126 7.71761 7.89450 8.17284 8.61324 8.76185 9.06014 9.45858 10.93720 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.004562 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.719458 B = 6135.654912 C = 6956.121886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.527 3.473 15 O -0.526 6.526 16 C -0.047 4.047 17 H 0.105 0.895 18 S -0.202 6.202 19 C -0.130 4.130 20 C -0.079 4.079 21 C -0.060 4.060 22 C -0.127 4.127 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.111 4.111 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 6.065 13.889 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.344 5.344 14 C 0.308 3.692 15 O -0.404 6.404 16 C -0.178 4.178 17 H 0.123 0.877 18 S 0.026 5.974 19 C -0.299 4.299 20 C -0.081 4.081 21 C -0.079 4.079 22 C -0.145 4.145 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.131 4.131 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.155 0.845 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.077 6.545 12.117 17.064 hybrid contribution 0.911 -0.824 1.422 1.879 sum -9.166 5.721 13.539 17.322 Atomic orbital electron populations 1.21836 0.98298 0.98058 1.01235 1.21943 0.92614 0.99757 1.02316 1.18822 0.94306 0.89115 0.80654 0.93184 1.21181 0.90597 1.39113 1.06387 0.92065 1.24869 0.98591 0.94767 0.95333 1.69882 1.35225 1.37533 1.09329 0.86516 0.84863 0.78355 0.77425 1.20183 1.21142 1.20124 1.46459 1.13767 1.55446 1.18760 1.19156 0.83282 0.79608 0.87137 1.90679 1.51030 1.59638 1.39051 1.22322 0.96782 0.96480 1.02252 0.87692 1.87224 1.87890 1.04618 1.17620 1.23453 1.04812 1.04740 0.96854 1.19396 0.92644 1.00321 0.95780 1.21196 0.92076 0.96650 0.97998 1.21172 0.95851 0.99964 0.97551 1.21143 0.99303 0.98476 0.94670 1.20986 0.92897 1.01185 0.99745 1.20982 0.96127 0.99064 0.96907 0.95893 0.94315 0.93123 0.88207 0.95059 0.92501 0.77857 0.88039 0.90397 0.90529 0.84540 0.86041 0.86384 0.86270 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.52 37.16 0.32 -2.76 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.65 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.70 -14.41 5.02 -54.93 -0.28 -14.68 16 14 C 0.53 10.36 5.40 -10.98 -0.06 10.30 16 15 O -0.53 -11.95 11.77 5.55 0.07 -11.89 16 16 C -0.05 -0.71 2.82 -29.04 -0.08 -0.80 16 17 H 0.10 1.36 7.85 -51.92 -0.41 0.96 16 18 S -0.20 -2.93 21.38 -107.50 -2.30 -5.23 16 19 C -0.13 -1.29 10.54 101.05 1.07 -0.23 16 20 C -0.08 -1.15 4.35 -104.63 -0.46 -1.61 16 21 C -0.06 -0.91 8.06 -39.58 -0.32 -1.23 16 22 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 24 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 25 C -0.11 -1.38 9.67 -39.58 -0.38 -1.77 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 28 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 7.07 8.52 -40.82 -0.35 6.73 16 33 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.08 0.76 8.00 -51.92 -0.42 0.35 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.14 2.31 7.17 -52.48 -0.38 1.94 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.24 7.95 -52.49 -0.42 0.82 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -29.81 340.82 -9.44 -39.25 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.87 Total: 8.81 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.80 Total: -12.95 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.35 Total: -38.70 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.30 Total: -5.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.81 -9.44 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183905660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.760 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds