Wall clock time and date at job start Tue Mar 31 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46950 * 60.00390 * 9 7 5 11 11 H 1.48504 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47332 * 299.99972 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 H 1.08999 * 109.46845 * 334.71660 * 16 14 13 18 18 S 1.81393 * 109.47246 * 94.71969 * 16 14 13 19 19 C 1.81402 * 103.00075 * 184.99926 * 18 16 14 20 20 C 1.50696 * 109.47044 * 214.72259 * 16 14 13 21 21 C 1.38236 * 119.99909 * 299.72551 * 20 16 14 22 22 C 1.38240 * 120.00077 * 179.78581 * 21 20 16 23 23 C 1.38232 * 119.99616 * 0.44351 * 22 21 20 24 24 C 1.38234 * 120.00436 * 359.81247 * 23 22 21 25 25 C 1.38234 * 120.00053 * 119.99841 * 20 16 14 26 26 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 29 29 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 30 30 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 31 31 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 33 33 H 1.09004 * 109.46987 * 180.02562 * 19 18 16 34 34 H 1.09001 * 109.46685 * 300.00265 * 19 18 16 35 35 H 1.08993 * 109.46924 * 60.00088 * 19 18 16 36 36 H 1.08004 * 120.00285 * 359.97438 * 21 20 16 37 37 H 1.07999 * 120.00189 * 180.27279 * 22 21 20 38 38 H 1.08003 * 120.00080 * 179.83015 * 23 22 21 39 39 H 1.08001 * 120.00487 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.00205 * 359.97438 * 25 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5975 0.1471 -0.2351 11 1 6.3978 0.2165 -2.6506 12 1 6.4995 2.2813 -1.3823 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 1 0.6092 2.9187 3.4787 18 16 0.3850 5.1200 2.5295 19 6 -0.0056 5.7280 4.1934 20 6 -1.4330 3.1343 2.8983 21 6 -2.3592 3.5970 1.9823 22 6 -3.7094 3.4011 2.2055 23 6 -4.1336 2.7506 3.3491 24 6 -3.2076 2.2926 4.2676 25 6 -1.8573 2.4846 4.0423 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8292 -0.0611 -2.9500 32 1 2.2721 2.1230 1.9977 33 1 0.1680 6.8032 4.2373 34 1 -1.0511 5.5195 4.4203 35 1 0.6313 5.2267 4.9221 36 1 -2.0280 4.1088 1.0908 37 1 -4.4328 3.7586 1.4877 38 1 -5.1885 2.6000 3.5248 39 1 -3.5390 1.7841 5.1609 40 1 -1.1338 2.1267 4.7598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183905660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:37 Heat of formation + Delta-G solvation = -35.357789 kcal Electronic energy + Delta-G solvation = -21519.954967 eV Core-core repulsion = 18424.874075 eV Total energy + Delta-G solvation = -3095.080891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12581 -39.70653 -36.97909 -34.39826 -33.96593 -32.69028 -31.75154 -29.70049 -29.44929 -28.11074 -25.01990 -23.50418 -23.00839 -21.83425 -21.18634 -19.12186 -18.07608 -17.55051 -17.44382 -17.06440 -16.39229 -16.10180 -15.86588 -15.58700 -14.86107 -14.64705 -14.61241 -14.52879 -14.17664 -13.82051 -13.77622 -13.59865 -13.39612 -13.19083 -13.03496 -12.89073 -12.65614 -12.20350 -12.16818 -12.06286 -11.93545 -11.60208 -11.23542 -11.07473 -10.64037 -10.50762 -9.77320 -9.71760 -9.60938 -8.74049 -8.15825 -6.33248 0.04922 0.52981 0.61992 1.45066 1.47030 1.54625 1.56069 2.06181 2.32756 2.53476 3.02039 3.13713 3.44339 3.72534 4.02122 4.19788 4.20553 4.33121 4.35430 4.36515 4.47434 4.55184 4.64261 4.73659 4.75982 4.88129 5.03345 5.06485 5.20056 5.23871 5.41987 5.53545 5.55734 5.60073 5.65588 5.70156 5.77797 5.90832 6.12140 6.15879 6.73615 6.91491 7.32242 7.50790 8.89327 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.004562 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.719458 B = 6135.654912 C = 6956.121886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.697 5.697 14 C 0.523 3.477 15 O -0.563 6.563 16 C -0.029 4.029 17 H 0.131 0.869 18 S -0.262 6.262 19 C -0.108 4.108 20 C -0.096 4.096 21 C -0.085 4.085 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.112 4.112 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.162 5.802 17.218 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.307 3.693 15 O -0.442 6.442 16 C -0.160 4.160 17 H 0.149 0.851 18 S -0.034 6.034 19 C -0.276 4.276 20 C -0.098 4.098 21 C -0.105 4.105 22 C -0.156 4.156 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.132 4.132 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.136 0.864 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.257 6.296 15.488 19.614 hybrid contribution 0.855 -0.678 0.409 1.166 sum -9.401 5.618 15.897 19.304 Atomic orbital electron populations 1.21653 0.97014 0.99039 1.00134 1.21777 0.93634 0.99054 1.01373 1.18365 0.93684 0.89093 0.80951 0.98551 1.21531 0.91346 1.39029 1.06817 0.91115 1.25742 1.03262 0.94315 0.94940 1.70039 1.37127 1.38288 1.09830 0.85446 0.79164 0.78411 0.77612 1.18799 1.21153 1.19794 1.46222 1.14800 1.55722 1.17800 1.19888 0.82204 0.78734 0.88478 1.90664 1.51983 1.60569 1.40997 1.22098 0.97910 0.96214 0.99795 0.85129 1.87420 1.88199 1.05063 1.22686 1.23500 1.05448 1.05521 0.93163 1.19410 0.91755 1.01758 0.96914 1.21074 0.93596 0.98128 0.97663 1.21379 0.95084 1.00384 0.98781 1.21519 1.01079 0.97004 0.93605 1.21418 0.92269 1.00172 1.00542 1.21275 0.97447 0.98133 0.96320 0.93676 0.93911 0.95681 0.90926 0.93951 0.92590 0.76271 0.86357 0.89900 0.88518 0.87815 0.85014 0.83393 0.82983 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.64 2.24 44.24 0.10 14.74 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -29.31 8.73 25.60 0.22 -29.09 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -52.68 11.29 21.45 0.24 -52.44 16 9 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.70 -29.32 5.02 -446.10 -2.24 -31.56 16 14 C 0.52 21.10 5.40 87.66 0.47 21.57 16 15 O -0.56 -26.97 11.77 -3.04 -0.04 -27.00 16 16 C -0.03 -0.88 2.82 29.10 0.08 -0.79 16 17 H 0.13 3.11 7.85 -2.39 -0.02 3.10 16 18 S -0.26 -7.56 21.38 -56.49 -1.21 -8.76 16 19 C -0.11 -1.88 10.54 113.37 1.20 -0.69 16 20 C -0.10 -2.71 4.35 -19.87 -0.09 -2.80 16 21 C -0.09 -2.64 8.06 22.27 0.18 -2.46 16 22 C -0.14 -3.47 10.05 22.27 0.22 -3.24 16 23 C -0.11 -2.25 10.05 22.27 0.22 -2.03 16 24 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 25 C -0.11 -2.45 9.67 22.27 0.22 -2.24 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 1.90 5.65 -2.39 -0.01 1.89 16 28 H 0.02 1.23 7.85 -2.39 -0.02 1.22 16 29 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.40 14.50 8.52 -92.71 -0.79 13.72 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.40 8.00 -2.39 -0.02 1.38 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.10 3.82 7.17 -2.91 -0.02 3.80 16 37 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.14 2.37 7.95 -2.91 -0.02 2.34 16 Total: -1.00 -68.19 340.82 3.31 -64.88 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.24 Total: 28.99 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.28 Total: -18.48 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -2.00 Total: -84.00 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.04 Total: -27.00 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.21 Total: -8.76 kcal Total: -68.19 3.31 -64.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183905660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.525 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds