Wall clock time and date at job start Tue Mar 31 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 H 1.09003 * 109.46882 * 55.00193 * 3 2 1 5 5 C 1.50694 * 109.47454 * 175.00415 * 3 2 1 6 6 H 1.08003 * 120.00472 * 119.99704 * 5 3 2 7 7 C 1.37882 * 120.00034 * 300.00156 * 5 3 2 8 8 N 1.31506 * 120.00327 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99653 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.46921 * 90.00103 * 9 7 5 11 11 H 1.48492 * 109.47165 * 209.99831 * 9 7 5 12 12 H 1.48499 * 109.46978 * 330.00052 * 9 7 5 13 13 N 1.46506 * 109.47387 * 295.00558 * 3 2 1 14 14 C 1.34771 * 120.00082 * 85.26917 * 13 3 2 15 15 O 1.21595 * 120.00227 * 359.73325 * 14 13 3 16 16 C 1.47522 * 119.99955 * 179.72386 * 14 13 3 17 17 C 1.39813 * 120.06908 * 0.02562 * 16 14 13 18 18 C 1.37586 * 119.93000 * 179.97438 * 17 16 14 19 19 C 1.39240 * 120.07435 * 359.97438 * 18 17 16 20 20 N 1.39042 * 119.93402 * 180.02562 * 19 18 17 21 21 C 1.39199 * 120.13043 * 0.04138 * 19 18 17 22 22 N 1.48023 * 119.96209 * 180.02562 * 21 19 18 23 23 O 1.21803 * 120.00140 * 217.14017 * 22 21 19 24 24 O 1.21799 * 120.00024 * 37.13540 * 22 21 19 25 25 C 1.37629 * 120.07556 * 359.69997 * 21 19 18 26 26 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46614 * 299.99879 * 1 2 3 28 28 H 1.09003 * 109.47303 * 59.99189 * 1 2 3 29 29 H 1.08998 * 109.46999 * 240.00448 * 2 1 3 30 30 H 1.08994 * 109.47447 * 120.00236 * 2 1 3 31 31 H 0.97003 * 120.00188 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99547 * 265.00318 * 13 3 2 33 33 H 1.08003 * 120.03601 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.96226 * 179.97438 * 18 17 16 35 35 H 0.96996 * 119.99957 * 7.85856 * 20 19 18 36 36 H 0.97001 * 120.00096 * 187.85802 * 20 19 18 37 37 H 1.07994 * 120.04268 * 180.26979 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8784 1.2278 8 7 5.4540 0.8795 1.3356 9 14 3.0964 0.1100 2.5706 10 1 2.8746 -1.3261 2.2644 11 1 3.7943 0.2358 3.8753 12 1 1.7883 0.8093 2.6394 13 7 1.6524 2.0976 -1.2518 14 6 0.4372 2.6693 -1.3650 15 8 -0.3393 2.6372 -0.4298 16 6 0.0492 3.3342 -2.6233 17 6 0.9408 3.3718 -3.6997 18 6 0.5757 3.9923 -4.8721 19 6 -0.6803 4.5820 -4.9878 20 7 -1.0464 5.2078 -6.1742 21 6 -1.5700 4.5466 -3.9179 22 7 -2.9046 5.1742 -4.0451 23 8 -3.3990 5.7520 -3.0937 24 8 -3.5082 5.1130 -5.1012 25 6 -1.2129 3.9228 -2.7442 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8771 0.4817 2.1126 32 1 2.2718 2.1232 -1.9978 33 1 1.9150 2.9142 -3.6108 34 1 1.2642 4.0219 -5.7038 35 1 -0.4770 5.1359 -6.9562 36 1 -1.8712 5.7163 -6.2200 37 1 -1.9053 3.8919 -1.9160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183925087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:36 Heat of formation + Delta-G solvation = -10.533645 kcal Electronic energy + Delta-G solvation = -23243.829219 eV Core-core repulsion = 19603.531568 eV Total energy + Delta-G solvation = -3640.297650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37923 -40.25564 -38.79595 -36.76459 -35.57336 -34.98905 -32.74678 -32.12591 -31.49655 -29.67025 -27.62904 -26.39875 -23.92273 -22.97276 -22.64575 -21.15747 -19.96518 -19.23928 -18.84821 -18.14527 -17.68562 -17.32506 -16.82551 -16.17966 -15.72934 -15.11264 -14.63760 -14.56068 -14.35696 -13.87186 -13.60031 -13.26464 -13.05619 -12.49627 -12.17888 -11.96441 -11.86212 -11.73564 -11.29860 -11.28083 -11.20755 -11.06017 -10.96526 -10.68526 -9.98888 -9.89157 -9.68879 -9.36806 -9.29712 -8.82595 -8.40542 -8.14420 -6.27503 -4.30843 -0.09609 0.62484 1.01764 1.26146 2.71824 3.03290 3.19469 3.32283 3.36657 3.66937 3.72578 4.01806 4.26286 4.50758 4.66138 4.69139 4.88465 5.06374 5.24950 5.34165 5.69235 5.82361 5.90675 5.94601 5.97060 6.12023 6.23227 6.56801 6.59567 6.64171 6.76449 6.88912 6.95729 7.14733 7.20865 7.42023 7.49058 8.03300 8.39533 8.65904 8.77365 9.32787 10.84324 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028629 B = 0.003760 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.778750 B = 7444.868722 C = 8006.272834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.692 5.692 14 C 0.551 3.449 15 O -0.542 6.542 16 C -0.175 4.175 17 C 0.007 3.993 18 C -0.202 4.202 19 C 0.295 3.705 20 N -0.849 5.849 21 C -0.129 4.129 22 N 0.040 4.960 23 O -0.148 6.148 24 O -0.184 6.184 25 C 0.040 3.960 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.411 0.589 36 H 0.410 0.590 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 5.692 -15.367 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.340 5.340 14 C 0.337 3.663 15 O -0.422 6.422 16 C -0.181 4.181 17 C -0.013 4.013 18 C -0.225 4.225 19 C 0.182 3.818 20 N -0.389 5.389 21 C -0.218 4.218 22 N 0.557 4.443 23 O -0.368 6.368 24 O -0.392 6.392 25 C 0.020 3.980 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.241 0.759 36 H 0.244 0.756 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.126 5.298 -14.562 17.984 hybrid contribution -0.468 -0.163 -0.041 0.497 sum -9.594 5.136 -14.604 18.212 Atomic orbital electron populations 1.21886 0.96915 0.99175 1.02272 1.22290 0.94379 0.99813 1.01254 1.19216 0.95773 0.88570 0.82498 0.92999 1.21013 0.88445 1.40128 1.08007 0.90166 1.24819 0.94866 0.95046 0.97646 1.69855 1.08703 1.44301 1.29845 0.86914 0.81012 0.79980 0.80934 1.20183 1.22091 1.18374 1.46085 1.14454 1.55311 1.18187 1.17775 0.82998 0.79181 0.86391 1.90783 1.51440 1.60290 1.39690 1.19912 0.94629 1.06761 0.96783 1.21567 0.98686 0.90566 0.90482 1.20609 0.94576 1.06523 1.00785 1.17504 0.91561 0.88184 0.84580 1.42838 1.29047 1.56323 1.10671 1.20308 0.85561 1.16541 0.99388 1.43450 1.02132 0.98509 1.00196 1.94583 1.70358 1.40910 1.30958 1.94442 1.62156 1.65291 1.17310 1.20780 0.95803 0.87621 0.93809 0.94859 0.92749 0.93029 0.92220 0.92621 0.92196 0.77236 0.83315 0.83246 0.75917 0.75650 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.52 37.16 0.32 -2.50 16 2 C -0.14 -2.94 5.11 -26.73 -0.14 -3.08 16 3 C 0.24 5.44 1.83 -69.08 -0.13 5.32 16 4 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -13.83 9.31 -34.44 -0.32 -14.15 16 6 H 0.08 2.15 7.98 -52.48 -0.42 1.73 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.57 13.96 55.43 0.77 -24.79 16 9 Si 0.88 21.10 24.41 -169.99 -4.15 16.95 16 10 H -0.27 -6.38 6.83 56.52 0.39 -5.99 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.69 -12.56 4.97 -55.98 -0.28 -12.84 16 14 C 0.55 9.67 6.34 -12.48 -0.08 9.59 16 15 O -0.54 -11.30 13.48 5.28 0.07 -11.23 16 16 C -0.17 -2.36 5.88 -104.95 -0.62 -2.97 16 17 C 0.01 0.07 9.53 -39.23 -0.37 -0.31 16 18 C -0.20 -1.63 9.87 -39.45 -0.39 -2.02 16 19 C 0.29 2.81 6.71 -83.86 -0.56 2.24 16 20 N -0.85 -5.80 8.79 32.41 0.28 -5.52 16 21 C -0.13 -1.59 6.51 -79.81 -0.52 -2.11 16 22 N 0.04 0.54 4.28 34.03 0.15 0.68 16 23 O -0.15 -2.20 18.94 -29.46 -0.56 -2.75 16 24 O -0.18 -2.40 16.75 -29.46 -0.49 -2.90 16 25 C 0.04 0.54 9.20 -39.23 -0.36 0.18 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 28 H 0.05 0.97 5.66 -51.93 -0.29 0.68 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.25 3.22 -51.93 -0.17 1.08 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.39 6.00 6.56 -40.82 -0.27 5.74 16 33 H 0.15 1.20 6.39 -52.48 -0.34 0.87 16 34 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.41 1.50 8.84 -40.82 -0.36 1.13 16 36 H 0.41 3.08 6.45 -40.82 -0.26 2.82 16 37 H 0.16 2.28 7.59 -52.49 -0.40 1.88 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -31.65 310.10 -6.51 -38.16 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -3.71 Total: 7.30 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.27 Total: -7.73 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.93 Total: -42.47 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.98 Total: -16.88 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.15 Total: 16.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.65 -6.51 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183925087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.624 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds