Wall clock time and date at job start Tue Mar 31 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 H 1.09003 * 109.46882 * 55.00193 * 3 2 1 5 5 C 1.50694 * 109.47454 * 175.00415 * 3 2 1 6 6 H 1.08003 * 120.00472 * 119.99704 * 5 3 2 7 7 C 1.37882 * 120.00034 * 300.00156 * 5 3 2 8 8 N 1.31506 * 120.00327 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99653 * 359.97438 * 7 5 3 10 10 H 1.48507 * 109.46921 * 90.00103 * 9 7 5 11 11 H 1.48492 * 109.47165 * 209.99831 * 9 7 5 12 12 H 1.48499 * 109.46978 * 330.00052 * 9 7 5 13 13 N 1.46506 * 109.47387 * 295.00558 * 3 2 1 14 14 C 1.34771 * 120.00082 * 85.26917 * 13 3 2 15 15 O 1.21595 * 120.00227 * 359.73325 * 14 13 3 16 16 C 1.47522 * 119.99955 * 179.72386 * 14 13 3 17 17 C 1.39813 * 120.06908 * 0.02562 * 16 14 13 18 18 C 1.37586 * 119.93000 * 179.97438 * 17 16 14 19 19 C 1.39240 * 120.07435 * 359.97438 * 18 17 16 20 20 N 1.39042 * 119.93402 * 180.02562 * 19 18 17 21 21 C 1.39199 * 120.13043 * 0.04138 * 19 18 17 22 22 N 1.48023 * 119.96209 * 180.02562 * 21 19 18 23 23 O 1.21803 * 120.00140 * 217.14017 * 22 21 19 24 24 O 1.21799 * 120.00024 * 37.13540 * 22 21 19 25 25 C 1.37629 * 120.07556 * 359.69997 * 21 19 18 26 26 H 1.08999 * 109.47188 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46614 * 299.99879 * 1 2 3 28 28 H 1.09003 * 109.47303 * 59.99189 * 1 2 3 29 29 H 1.08998 * 109.46999 * 240.00448 * 2 1 3 30 30 H 1.08994 * 109.47447 * 120.00236 * 2 1 3 31 31 H 0.97003 * 120.00188 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99547 * 265.00318 * 13 3 2 33 33 H 1.08003 * 120.03601 * 359.97438 * 17 16 14 34 34 H 1.08007 * 119.96226 * 179.97438 * 18 17 16 35 35 H 0.96996 * 119.99957 * 7.85856 * 20 19 18 36 36 H 0.97001 * 120.00096 * 187.85802 * 20 19 18 37 37 H 1.07994 * 120.04268 * 180.26979 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8784 1.2278 8 7 5.4540 0.8795 1.3356 9 14 3.0964 0.1100 2.5706 10 1 2.8746 -1.3261 2.2644 11 1 3.7943 0.2358 3.8753 12 1 1.7883 0.8093 2.6394 13 7 1.6524 2.0976 -1.2518 14 6 0.4372 2.6693 -1.3650 15 8 -0.3393 2.6372 -0.4298 16 6 0.0492 3.3342 -2.6233 17 6 0.9408 3.3718 -3.6997 18 6 0.5757 3.9923 -4.8721 19 6 -0.6803 4.5820 -4.9878 20 7 -1.0464 5.2078 -6.1742 21 6 -1.5700 4.5466 -3.9179 22 7 -2.9046 5.1742 -4.0451 23 8 -3.3990 5.7520 -3.0937 24 8 -3.5082 5.1130 -5.1012 25 6 -1.2129 3.9228 -2.7442 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8771 0.4817 2.1126 32 1 2.2718 2.1232 -1.9978 33 1 1.9150 2.9142 -3.6108 34 1 1.2642 4.0219 -5.7038 35 1 -0.4770 5.1359 -6.9562 36 1 -1.8712 5.7163 -6.2200 37 1 -1.9053 3.8919 -1.9160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183925087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:35 Heat of formation + Delta-G solvation = -33.461804 kcal Electronic energy + Delta-G solvation = -23244.823458 eV Core-core repulsion = 19603.531568 eV Total energy + Delta-G solvation = -3641.291890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.38666 -41.39869 -39.97470 -37.80489 -37.16405 -35.92704 -34.45244 -33.55293 -32.74952 -30.65200 -29.36711 -27.42737 -25.17016 -24.28474 -23.86637 -22.50147 -21.49022 -20.48239 -19.86640 -19.08815 -18.86283 -18.47851 -17.79273 -17.76220 -17.18685 -16.51864 -16.19143 -15.53571 -15.29978 -15.12711 -14.98722 -14.73229 -14.12870 -14.06249 -13.77820 -13.64448 -13.06715 -12.97864 -12.79585 -12.76760 -12.41085 -12.36080 -12.26812 -12.00925 -11.84901 -11.39594 -11.22983 -10.91091 -10.83431 -10.73407 -9.84647 -9.10772 -8.36950 -6.41885 -1.06740 -0.32049 0.09860 0.30322 1.27942 1.37302 1.46070 1.69027 2.27000 2.29704 2.38342 2.56033 2.99654 3.19477 3.62213 3.78544 3.80970 3.87830 4.24108 4.32383 4.37160 4.46020 4.54302 4.77863 4.88307 4.97864 5.01002 5.08110 5.12746 5.23051 5.31146 5.41202 5.52059 5.62714 5.87155 6.14698 6.42425 6.46643 6.59943 6.83045 7.20198 7.40363 8.77735 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028629 B = 0.003760 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.778750 B = 7444.868722 C = 8006.272834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.022 0.978 5 C -0.531 4.531 6 H 0.064 0.936 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.930 3.070 10 H -0.260 1.260 11 H -0.296 1.296 12 H -0.262 1.262 13 N -0.690 5.690 14 C 0.552 3.448 15 O -0.583 6.583 16 C -0.192 4.192 17 C 0.015 3.985 18 C -0.179 4.179 19 C 0.308 3.692 20 N -0.828 5.828 21 C -0.147 4.147 22 N 0.043 4.957 23 O -0.205 6.205 24 O -0.158 6.158 25 C 0.031 3.969 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.270 0.730 32 H 0.408 0.592 33 H 0.171 0.829 34 H 0.198 0.802 35 H 0.430 0.570 36 H 0.410 0.590 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 5.384 -18.506 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.175 4.175 3 C 0.144 3.856 4 H 0.040 0.960 5 C -0.569 4.569 6 H 0.082 0.918 7 C -0.166 4.166 8 N -0.570 5.570 9 Si 0.758 3.242 10 H -0.185 1.185 11 H -0.223 1.223 12 H -0.187 1.187 13 N -0.339 5.339 14 C 0.340 3.660 15 O -0.465 6.465 16 C -0.198 4.198 17 C -0.005 4.005 18 C -0.201 4.201 19 C 0.191 3.809 20 N -0.367 5.367 21 C -0.236 4.236 22 N 0.556 4.444 23 O -0.412 6.412 24 O -0.375 6.375 25 C 0.011 3.989 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.189 0.811 34 H 0.215 0.785 35 H 0.265 0.735 36 H 0.243 0.757 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.087 5.051 -17.669 20.501 hybrid contribution -0.478 0.014 0.663 0.818 sum -9.565 5.064 -17.006 20.158 Atomic orbital electron populations 1.21776 0.95521 1.00526 1.01492 1.22209 0.95554 0.98478 1.01304 1.18829 0.93446 0.89656 0.83640 0.95987 1.21263 0.90075 1.38495 1.07079 0.91825 1.25463 0.95594 0.95903 0.99680 1.69953 1.10129 1.46122 1.30808 0.86131 0.79376 0.80062 0.78627 1.18534 1.22306 1.18713 1.45818 1.15307 1.55507 1.17283 1.18292 0.82005 0.78308 0.87385 1.90760 1.52470 1.61664 1.41607 1.19484 0.95585 1.08561 0.96152 1.21787 0.98684 0.90155 0.89827 1.21057 0.94064 1.03907 1.01097 1.17707 0.91394 0.87405 0.84381 1.42904 1.29066 1.54352 1.10392 1.20346 0.85413 1.17611 1.00233 1.43637 1.02586 0.98246 0.99904 1.94600 1.71490 1.43474 1.31598 1.94396 1.62172 1.63901 1.17038 1.20563 0.95729 0.88707 0.93947 0.92313 0.94628 0.92806 0.90781 0.93822 0.92110 0.75464 0.81142 0.78523 0.73541 0.75722 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.52 71.98 0.61 -4.53 16 2 C -0.14 -5.66 5.11 30.59 0.16 -5.51 16 3 C 0.25 11.18 1.83 44.24 0.08 11.27 16 4 H 0.02 1.14 6.63 -2.39 -0.02 1.12 16 5 C -0.53 -27.44 9.31 25.60 0.24 -27.20 16 6 H 0.06 3.43 7.98 -2.91 -0.02 3.41 16 7 C 0.03 1.84 5.45 84.66 0.46 2.30 16 8 N -0.93 -54.12 13.96 21.45 0.30 -53.82 16 9 Si 0.93 43.77 24.41 68.60 1.67 45.44 16 10 H -0.26 -11.48 6.83 99.48 0.68 -10.80 16 11 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 12 H -0.26 -12.38 6.53 99.48 0.65 -11.73 16 13 N -0.69 -24.63 4.97 -449.28 -2.23 -26.86 16 14 C 0.55 19.38 6.34 86.69 0.55 19.93 16 15 O -0.58 -25.08 13.48 -4.02 -0.05 -25.13 16 16 C -0.19 -4.98 5.88 -20.07 -0.12 -5.09 16 17 C 0.02 0.25 9.53 22.50 0.21 0.47 16 18 C -0.18 -1.97 9.87 22.36 0.22 -1.75 16 19 C 0.31 4.69 6.71 38.47 0.26 4.94 16 20 N -0.83 -7.59 8.79 -51.38 -0.45 -8.04 16 21 C -0.15 -3.42 6.51 36.46 0.24 -3.18 16 22 N 0.04 1.14 4.28 -46.25 -0.20 0.95 16 23 O -0.21 -6.39 18.94 18.88 0.36 -6.04 16 24 O -0.16 -3.86 16.75 18.89 0.32 -3.54 16 25 C 0.03 0.85 9.20 22.50 0.21 1.05 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.03 1.46 7.85 -2.39 -0.02 1.44 16 28 H 0.05 2.00 5.66 -2.39 -0.01 1.98 16 29 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.04 1.91 3.22 -2.39 -0.01 1.90 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.41 11.82 6.56 -92.71 -0.61 11.22 16 33 H 0.17 2.05 6.39 -2.91 -0.02 2.03 16 34 H 0.20 0.41 8.06 -2.91 -0.02 0.38 16 35 H 0.43 0.73 8.84 -92.71 -0.82 -0.09 16 36 H 0.41 4.61 6.45 -92.71 -0.60 4.01 16 37 H 0.14 4.22 7.59 -2.91 -0.02 4.20 16 Total: -1.00 -71.62 310.10 1.89 -69.73 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.94 Total: 14.61 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 3.12 Total: -7.31 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.58 Total: -87.77 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: 0.62 Total: -34.71 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.67 Total: 45.44 kcal Total: -71.62 1.89 -69.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183925087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.272 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds