Wall clock time and date at job start Tue Mar 31 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46950 * 60.00390 * 9 7 5 11 11 H 1.48504 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47332 * 299.99972 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 H 1.09000 * 110.66783 * 57.93903 * 16 14 13 18 18 C 1.54700 * 110.74761 * 294.72124 * 16 14 13 19 19 C 1.51648 * 101.93335 * 266.97268 * 18 16 14 20 20 C 1.37753 * 132.14533 * 164.57921 * 19 18 16 21 21 C 1.38530 * 119.96346 * 180.37812 * 20 19 18 22 22 F 1.35099 * 120.14690 * 180.02562 * 21 20 19 23 23 C 1.38478 * 119.70981 * 359.97438 * 21 20 19 24 24 C 1.37931 * 120.32470 * 359.83334 * 23 21 20 25 25 C 1.38863 * 107.04511 * 344.60922 * 19 18 16 26 26 O 1.36185 * 111.22573 * 358.93078 * 25 19 18 27 27 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 29 29 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 31 31 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 32 32 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 34 34 H 1.09003 * 110.93731 * 25.12854 * 18 16 14 35 35 H 1.09004 * 110.94021 * 148.77509 * 18 16 14 36 36 H 1.08003 * 120.01602 * 0.34774 * 20 19 18 37 37 H 1.08007 * 119.83545 * 179.81122 * 23 21 20 38 38 H 1.08003 * 119.86381 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5975 0.1471 -0.2351 11 1 6.3978 0.2165 -2.6506 12 1 6.4995 2.2813 -1.3823 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 1 0.7399 4.1414 2.8981 18 6 -0.0520 2.3191 3.8082 19 6 -1.5192 1.9372 3.7739 20 6 -2.2149 0.8894 4.3357 21 6 -3.5805 0.7773 4.1317 22 9 -4.2667 -0.2486 4.6814 23 6 -4.2395 1.7219 3.3629 24 6 -3.5435 2.7732 2.8037 25 6 -2.1709 2.8937 3.0066 26 8 -1.3044 3.8487 2.5687 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0611 -2.9500 33 1 2.2721 2.1230 1.9977 34 1 0.5806 1.4534 3.6119 35 1 0.2085 2.7817 4.7603 36 1 -1.6959 0.1555 4.9344 37 1 -5.3037 1.6347 3.2001 38 1 -4.0650 3.5059 2.2056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183941207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:35 Heat of formation + Delta-G solvation = -89.847976 kcal Electronic energy + Delta-G solvation = -23689.049333 eV Core-core repulsion = 20025.392394 eV Total energy + Delta-G solvation = -3663.656939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.89178 -41.44655 -38.77589 -37.11227 -35.04587 -33.15863 -32.29359 -31.10032 -29.79138 -29.39388 -26.99116 -24.57908 -23.04059 -22.53332 -21.93931 -20.54943 -19.45640 -18.01153 -17.48200 -17.30530 -16.71430 -16.21468 -15.61260 -15.37422 -15.01543 -14.64587 -14.38618 -14.30369 -13.82121 -13.42245 -13.15938 -13.04840 -12.75975 -12.70656 -12.51409 -12.20466 -11.69982 -11.45496 -11.35377 -11.24065 -11.04808 -10.90998 -10.85680 -10.37304 -10.23903 -9.68736 -9.21156 -9.12420 -9.07758 -8.55542 -8.03940 -7.93675 -6.16985 -4.27316 1.01723 1.10265 2.95294 3.18905 3.22305 3.28125 3.28655 3.50652 3.86165 4.01306 4.31220 4.36337 4.47350 4.71299 4.94295 5.06878 5.07543 5.14700 5.25849 5.42215 5.52671 5.60889 5.74908 5.95991 6.03349 6.20478 6.34716 6.40593 6.46301 6.60935 6.97948 7.02014 7.14399 7.28883 7.35135 7.55209 7.65394 7.83225 8.11896 8.52965 8.69958 8.98848 9.39956 10.88204 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.003961 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.204964 B = 7067.019258 C = 7378.402349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.484 3.516 15 O -0.526 6.526 16 C 0.060 3.940 17 H 0.140 0.860 18 C -0.100 4.100 19 C -0.146 4.146 20 C -0.101 4.101 21 C 0.063 3.937 22 F -0.141 7.141 23 C -0.117 4.117 24 C -0.107 4.107 25 C 0.113 3.887 26 O -0.272 6.272 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.023 0.977 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.389 0.611 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.987 3.005 13.775 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.267 3.733 15 O -0.403 6.403 16 C 0.000 4.000 17 H 0.157 0.843 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.119 4.119 21 C 0.044 3.956 22 F -0.119 7.119 23 C -0.136 4.136 24 C -0.126 4.126 25 C 0.067 3.933 26 O -0.184 6.184 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.221 0.779 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.586 3.067 12.807 16.288 hybrid contribution 1.326 -0.355 0.333 1.412 sum -8.260 2.712 13.139 15.755 Atomic orbital electron populations 1.21836 0.98340 0.98112 1.01155 1.21936 0.92539 0.99730 1.02351 1.18820 0.94283 0.89161 0.80700 0.93244 1.21168 0.90544 1.39392 1.06432 0.92066 1.24881 0.98645 0.94723 0.95332 1.69880 1.35297 1.37333 1.09313 0.86508 0.84755 0.78333 0.77501 1.20148 1.21111 1.20158 1.46466 1.14115 1.55798 1.18781 1.20476 0.83581 0.80264 0.88972 1.90722 1.51194 1.58749 1.39637 1.23498 0.84184 0.97965 0.94387 0.84282 1.21821 0.93234 0.99784 0.98893 1.20508 0.96147 0.97206 1.00792 1.20147 0.92153 0.98325 1.01316 1.17330 0.89915 0.88126 1.00239 1.91483 1.79439 1.57012 1.84003 1.20807 1.00822 0.93859 0.98094 1.20060 0.90743 0.99596 1.02191 1.19575 0.91864 0.88852 0.93041 1.86928 1.15009 1.34562 1.81874 0.94440 0.93187 0.95806 0.88204 0.95010 0.92428 0.77900 0.87869 0.87829 0.84495 0.83982 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.43 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.21 11.29 55.43 0.63 -23.59 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.70 -13.51 4.87 -54.93 -0.27 -13.78 16 14 C 0.48 9.15 5.63 -10.98 -0.06 9.08 16 15 O -0.53 -12.24 13.67 -13.50 -0.18 -12.42 16 16 C 0.06 0.83 4.11 -26.99 -0.11 0.72 16 17 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 18 C -0.10 -1.14 6.64 -26.52 -0.18 -1.32 16 19 C -0.15 -1.94 6.26 -104.10 -0.65 -2.59 16 20 C -0.10 -1.25 10.01 -39.65 -0.40 -1.65 16 21 C 0.06 0.80 7.31 -39.38 -0.29 0.51 16 22 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 23 C -0.12 -1.37 10.00 -39.61 -0.40 -1.76 16 24 C -0.11 -1.38 10.06 -39.31 -0.40 -1.78 16 25 C 0.11 1.66 6.90 -38.97 -0.27 1.39 16 26 O -0.27 -4.29 10.41 -39.39 -0.41 -4.70 16 27 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.22 8.54 -40.82 -0.35 5.87 16 34 H 0.10 1.16 7.79 -51.93 -0.40 0.76 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -30.84 321.67 -8.15 -38.99 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.66 Total: 6.47 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.12 Total: -9.12 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.36 Total: -37.37 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.59 Total: -17.12 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.84 -8.15 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183941207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.857 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds